Silkworm Genome Informatics Database

Gene

KWMTBOMO06911 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004644

Annotation

putative_translin-associated_factor_X_[Danaus_plexippus]

Location

Bomo_Chr11(-):19655639-19657125 View in EpiBrowser

Full name

Translin-associated protein X

Alternative Name

Translin-associated factor X

Location in the cell

Mitochondrial Reliability : 2.184

CDS

ATGTCAGGACGAGGAAGGCAAAGAAGTTACCGTAATCGCAATCAACAGACTCTATCTACAGTTGCGAGGGAAGCTGCTGCTTCGCTCGCTCCGGACAGTCCGATCTTAGCCATGTTTAAAAATGCTGCTCTAAAACTAAATGAACGACAGGATAGACACGAAAGACTGGTCAAACTCTCGAGAGACATTACTATTGAGAGCAAGAGAATTATTTTCTTGTTACACTCGGCTATTACAGAAGAATCTACAGCAAAAGTAATAGAAGAAGCTAAAGAAAGATTTCAGAAATTAATAAAAGGACCAATTAAATCTGTAGGCTTGGAACTTGAGAACAGCCCTGCATATTTACATTCACGGGCAGTAACTGCAGGTTTCCAAGAATACATTGAAGCAAGAACTTTATTTTCTCTTATGGAGACCAAAAAGCTAATAAGTTGGCCAGAGATACGAGATGAATTCGTTTTTAGCATTCCAGAAGCTGAAAGTGACAAAAAGAGAACTGTTATAACAATGGTATTACATTTGGACTACATGCTTGGGTTGGCTGATCTGACTGGAGAGTTGATGAGAAGAGCCATCAACAGTATATCAAATGGGGACAGCAAGGAATGCTTTCATGCTTGTCAAGTTGTCAGAAATCTTTACACTGGGTATTTAGGGCTATTTGGTATAGGTAAGGAATTGGCTCGCAAAATGAATACAACACGCAGCAATGTAGCAAAAGTTGAGAGTGCTGTCTATGCCCTTCAAGTGCGAGGAGGTGAGACTCCCATGCTGTTGCTGCAAATACCACCCCATGAATCCTGGGAAGATGTTCATTCTGATGATGAAGGATATTATTGA

Protein

MSGRGRQRSYRNRNQQTLSTVAREAAASLAPDSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAKERFQKLIKGPIKSVGLELENSPAYLHSRAVTAGFQEYIEARTLFSLMETKKLISWPEIRDEFVFSIPEAESDKKRTVITMVLHLDYMLGLADLTGELMRRAINSISNGDSKECFHACQVVRNLYTGYLGLFGIGKELARKMNTTRSNVAKVESAVYALQVRGGETPMLLLQIPPHESWEDVHSDDEGYY

Description

Acts in combination with TSN as an endonuclease involved in the activation of the RNA-induced silencing complex (RISC). Possible role in spermatogenesis (By similarity).

Subunit

Ring-shaped heterooctamer of six TSN and two TSNAX subunits. Interacts with GOLGA3, TSNAXIP1, SUN1 and AKAP9. Interacts with the homodimeric form of C1D following gamma-radiation. Interacts with TSN and C1D in a mutually exclusive manner (By similarity).

Similarity

Belongs to the translin family.

Keywords

Complete proteome Cytoplasm Developmental protein Differentiation DNA-binding Golgi apparatus Isopeptide bond Magnesium Metal-binding Nucleus Reference proteome Spermatogenesis Ubl conjugation

Feature

chain Translin-associated protein X

Uniprot

H9J554 S4PFL7 A0A212FLW2 A0A1E1WEY7 A0A3S2LXD2 A0A194Q9H5 + More
A0A2H1V346 A0A2A4K609 A0A0L7L3R8 A0A2W1BZX2 A0A194QR50 A0A232FH78 A0A1W4XMR8 U4ULA7 A0A0C9RBQ5 N6U2M8 A0A1Y1LKQ6 A0A0L7QXD0 A0A131Z041 A0A2A3E3Z7 A0A293N801 A0A224YHV8 A0A088A087 L7M5X1 A0A1J1HPS5 A0A0M9A9L1 A0A131XIA3 K7JAL8 A0A067RG13 A0A154P3I2 A0A139WEZ3 A0A310SS31 A0A1B0GH52 A0A1Z5L757 B4NAU3 A0A026WSS3 A0A2J7R9Z2 A0A2L2YA32 E0V932 A0A158NT45 B4GNT7 E2AXA1 Q29BD9 A0A1S3KC30 A0A1S3D572 A0A023G4C8 G3ML19 A0A226P4K0 A0A3B0JF38 A0A1D5PPF7 B7QCA6 G1NHC9 B3LZR5 A0A226MSD5 A0A195EFG8 A0A1E1XR10 A0A1S3KCM3 A0A1E1XDJ6 E2BA24 V5HJ73 A0A131XZJ4 A0A195BGB1 F1RGU1 Q9QZE7 A0A195C8F5 A0A061IEY9 Q3TXK6 H3ABS2 D0IQD7 A0A023GK33 Q9VF77 R0KX46 A0A0K8W5L0 A0A1L8DC07 B4QYI1 U3J176 A0A1W4VFE4 A0A0K8TRW1 A0A1U7QEY0 A0A0Q3M8V0 A0A250XXR4 F4WG66 R7V1X3 B4HM20 A0A151WJD5 B4KAP8 H0XMS2 U3KPA0 A0A0P6JT47 S7ME91 A0A151M2T4 A0A1U7RQI2 B3P0W1 A0A286XWI2 A0A210QW61 B4M5Z2 A0A091RKS7 H0ZIJ3 H0WSC5

Pubmed

19121390 23622113 22118469 26354079 26227816 28756777 + More
28648823 23537049 28004739 26830274 28797301 25576852 28049606 20075255 24845553 18362917 19820115 28528879 17994087 24508170 30249741 26561354 20566863 21347285 20798317 15632085 22216098 24621616 15592404 20838655 29209593 28503490 25765539 10790540 16141072 15489334 15314092 21183079 23929341 10349636 11042159 11076861 11217851 12466851 16141073 9215903 10731132 12537568 12537572 12537573 12537574 16110336 17028328 17569856 17569867 21552261 26109357 26109356 23749191 26369729 26319212 28071753 28087693 21719571 23254933 21993624 22293439 28812685 20360741

EMBL

BABH01040714 GAIX01006525 JAA86035.1 AGBW02007696 OWR54721.1 GDQN01005643 + More
JAT85411.1 RSAL01000138 RVE46173.1 KQ459252 KPJ02167.1 ODYU01000452 SOQ35263.1 NWSH01000092 PCG79667.1 JTDY01003110 KOB70133.1 KZ149906 PZC78276.1 KQ461185 KPJ07450.1 NNAY01000203 OXU30045.1 KB632263 ERL90956.1 GBYB01013979 GBYB01013983 JAG83746.1 JAG83750.1 APGK01052273 KB741211 ENN72822.1 GEZM01052923 JAV74239.1 KQ414704 KOC63272.1 GEDV01003763 JAP84794.1 KZ288387 PBC26420.1 GFWV01023043 MAA47770.1 GFPF01005409 MAA16555.1 GACK01005772 JAA59262.1 CVRI01000015 CRK90055.1 KQ435719 KOX78743.1 GEFH01002636 JAP65945.1 AAZX01004211 AAZX01006722 AAZX01008950 AAZX01010809 AAZX01011112 AAZX01013477 AAZX01017075 AAZX01021458 AAZX01024834 AAZX01026568 KK852498 KDR22687.1 KQ434809 KZC06382.1 KQ971354 KYB26397.1 KQ761039 OAD58332.1 AJWK01003974 GFJQ02003734 JAW03236.1 CH964232 EDW80907.1 KK107111 QOIP01000011 EZA59033.1 RLU16385.1 NEVH01006580 PNF37652.1 IAAA01013977 IAAA01013978 IAAA01013979 LAA04993.1 DS234988 EEB09888.1 ADTU01025502 CH479186 EDW38820.1 GL443546 EFN61935.1 CM000070 EAL27059.1 GBBM01006337 JAC29081.1 JO842570 AEO34187.1 AWGT02000162 OXB74975.1 OUUW01000005 SPP80745.1 AADN05000005 ABJB010442867 DS906326 EEC16478.1 CH902617 EDV43059.1 MCFN01000484 OXB58243.1 KQ978957 KYN27020.1 GFAA01001751 JAU01684.1 GFAC01001997 JAT97191.1 GL446664 EFN87433.1 GANP01010950 JAB73518.1 GEFM01004755 JAP71041.1 KQ976488 KYM83632.1 AEMK02000096 AF187040 AK030407 AK146339 BC004611 KQ978205 KYM96461.1 KE671339 ERE80330.1 AK159223 BAE34910.1 AFYH01175908 AFYH01175909 AFYH01175910 AFYH01175911 BT100175 ACY09135.1 GBBM01002025 JAC33393.1 AE014297 DQ448818 BT132858 AAF55183.3 AAN13659.2 ABE01846.1 AEV12233.1 KB743594 EOA97853.1 GDHF01005908 JAI46406.1 GFDF01010102 JAV03982.1 CM000364 EDX12826.1 ADON01103995 ADON01103996 GDAI01000948 JAI16655.1 LMAW01002628 KQK78856.1 GFFV01003797 JAV36148.1 GL888128 EGI66833.1 AMQN01005364 KB295847 ELU12544.1 CH480815 EDW42057.1 KQ983039 KYQ47941.1 CH933806 EDW16785.1 AAQR03016774 AAGW02026213 AAGW02026214 AAGW02026215 GEBF01007358 JAN96274.1 KE161066 EPQ01500.1 AKHW03006780 KYO18796.1 CH954181 EDV49009.1 AAKN02021631 NEDP02001566 OWF52971.1 CH940652 EDW59068.1 KK821959 KFQ40463.1 ABQF01014640 AAQR03135365 AAQR03135366 AAQR03135367 AAQR03135368 AAQR03135369 AAQR03135370 AAQR03135371 AAQR03135372 AAQR03135373 AAQR03135374

Proteomes

UP000005204 UP000007151 UP000283053 UP000053268 UP000218220 UP000037510 + More
UP000053240 UP000215335 UP000192223 UP000030742 UP000019118 UP000053825 UP000242457 UP000005203 UP000183832 UP000053105 UP000002358 UP000027135 UP000076502 UP000007266 UP000092461 UP000007798 UP000053097 UP000279307 UP000235965 UP000009046 UP000005205 UP000008744 UP000000311 UP000001819 UP000085678 UP000079169 UP000198419 UP000268350 UP000000539 UP000001555 UP000001645 UP000007801 UP000198323 UP000078492 UP000008237 UP000078540 UP000008227 UP000000589 UP000078542 UP000030759 UP000008672 UP000000803 UP000000304 UP000016666 UP000192221 UP000189706 UP000051836 UP000007755 UP000014760 UP000001292 UP000075809 UP000009192 UP000005225 UP000001811 UP000050525 UP000189705 UP000008711 UP000005447 UP000242188 UP000008792 UP000007754

PRIDE

H9J554 B7QCA6 V5HJ73 F1RGU1 Q9QZE7 Q3TXK6 + More
D0IQD7 Q9VF77

Pfam

PF01997 Translin + More
PF08205 C2-set_2

Interpro

IPR016068   Translin_N        + More
IPR002848   Translin_fam
IPR036081   Translin_sf
IPR016069   Translin_C
IPR007110   Ig-like_dom
IPR003599   Ig_sub
IPR013783   Ig-like_fold
IPR013162   CD80_C2-set
IPR003598   Ig_sub2
IPR036179   Ig-like_dom_sf
IPR036691   Endo/exonu/phosph_ase_sf

SUPFAM

SSF74784   SSF74784        + More
SSF48726   SSF48726
SSF56219   SSF56219

Gene 3D

1.20.58.190 1.20.58.200 2.60.40.10 3.60.10.10

ProteinModelPortal

H9J554 S4PFL7 A0A212FLW2 A0A1E1WEY7 A0A3S2LXD2 A0A194Q9H5 + More
A0A2H1V346 A0A2A4K609 A0A0L7L3R8 A0A2W1BZX2 A0A194QR50 A0A232FH78 A0A1W4XMR8 U4ULA7 A0A0C9RBQ5 N6U2M8 A0A1Y1LKQ6 A0A0L7QXD0 A0A131Z041 A0A2A3E3Z7 A0A293N801 A0A224YHV8 A0A088A087 L7M5X1 A0A1J1HPS5 A0A0M9A9L1 A0A131XIA3 K7JAL8 A0A067RG13 A0A154P3I2 A0A139WEZ3 A0A310SS31 A0A1B0GH52 A0A1Z5L757 B4NAU3 A0A026WSS3 A0A2J7R9Z2 A0A2L2YA32 E0V932 A0A158NT45 B4GNT7 E2AXA1 Q29BD9 A0A1S3KC30 A0A1S3D572 A0A023G4C8 G3ML19 A0A226P4K0 A0A3B0JF38 A0A1D5PPF7 B7QCA6 G1NHC9 B3LZR5 A0A226MSD5 A0A195EFG8 A0A1E1XR10 A0A1S3KCM3 A0A1E1XDJ6 E2BA24 V5HJ73 A0A131XZJ4 A0A195BGB1 F1RGU1 Q9QZE7 A0A195C8F5 A0A061IEY9 Q3TXK6 H3ABS2 D0IQD7 A0A023GK33 Q9VF77 R0KX46 A0A0K8W5L0 A0A1L8DC07 B4QYI1 U3J176 A0A1W4VFE4 A0A0K8TRW1 A0A1U7QEY0 A0A0Q3M8V0 A0A250XXR4 F4WG66 R7V1X3 B4HM20 A0A151WJD5 B4KAP8 H0XMS2 U3KPA0 A0A0P6JT47 S7ME91 A0A151M2T4 A0A1U7RQI2 B3P0W1 A0A286XWI2 A0A210QW61 B4M5Z2 A0A091RKS7 H0ZIJ3 H0WSC5

PDB

3AXJ E-value=5.88777e-41, Score=419

KEGG

101738980 no KO assigned | (RefSeq) translin-associated protein X

GO

GO:0043565 GO:0007275 GO:0015031 GO:0016021 GO:0003697 GO:0005737 GO:0004521 GO:0005634 GO:0005840 GO:0007283 GO:0048471 GO:0031687 GO:0044877 GO:0030154 GO:0046872 GO:0005794 GO:0090502 GO:0015629 GO:0030833 GO:0005515 GO:0043401 GO:0006418 GO:0016020 GO:0006260

PANTHER

PTHR10741

Subcellular location

Cytoplasm   Expressed in the cytoplasm in the presence of TSN (By similarity). Accumulate in the Golgi complex of mid-late pachytene spermatocytes.   With evidence from 1 publications.
Perinuclear region   Expressed in the cytoplasm in the presence of TSN (By similarity). Accumulate in the Golgi complex of mid-late pachytene spermatocytes.   With evidence from 1 publications.
Golgi apparatus   Expressed in the cytoplasm in the presence of TSN (By similarity). Accumulate in the Golgi complex of mid-late pachytene spermatocytes.   With evidence from 1 publications.
Nucleus   Expressed in the cytoplasm in the presence of TSN (By similarity). Accumulate in the Golgi complex of mid-late pachytene spermatocytes.   With evidence from 1 publications.

Length:

280

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10523

Exp number, first 60 AAs:

0.04137

Total prob of N-in:

0.12419

outside

1 - 280

Pi

7.286447

Theta

11.35632

Tajima's D

-0.722417

CLR

4.865412

CSRT

0.190790460476976

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics