Gene

KWMTBOMO06910

Pre Gene Modal

BGIBMGA004648

Annotation

PREDICTED:_aprataxin_and_PNK-like_factor_isoform_X4_[Bombyx_mori]

Location

Bomo_Chr11(+):19645926-19653397      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.766

CDS

ATGGAGTTTAAATTAGTGCGAATTGATACTTCAGAGCCTCAAAAGATTGACCTTCCTGAGGGTACACACATAATAGGCAGAGGAAAGTTTATTGTAAATGATGCAGAAGATATGAGGGTATCAAGAAATCATGCAGAGATTGAAGTCACCGATACCTGTGTCATCTTAAAGTCTTTACACCAAAATCCATGTTTCTATATTGACAAATTATCAAACAGCAAACGGACATTAACACAGAATAATGCACAATTGCTATGTAATGGTGATAAATTTGGTATACTACCTGATACATATTGGTTTGAATTAATATGGTGCTCATCAGATGTGATGAAAAATGATGTTACAAGCAATAGTACTCCAGCTGATAATAAAGAAATACCCAACGAGTTGAGAGCAACACAAGAATATAATTTAAATGAAACAAATGGCTTACAAGAGACAGTTGAGGAGGGTGAAGCTCCACAAACATTAAAAGAACAATCACTAGAAAAACAATCAGAAAGTCCTCAAAAATCATCTCAAGATGAAATTGTAGGTAAAAGATCTATCACTTCAGAAGATTGCAACAATAGTTCAGAAAGTAAGAGATTGAAAATTAAAAACGAAGAAGAATCTGGAGATGAGGCCAGAGGACATGAAGACTCTAGTGTGGCGGGACCGAGCTGTGATCAACATAAAGAGGAACAAAATGATAATGGAGAAGTGAAGGATCAAAATACATCACAGAATAGTAACCATGATGGTGCCCAGGGAATTAAGTCTCCCAGAGAGAGGTGCATGTATGGTGCTAATTGTTACAGACGCAACCCCCAGCACGCGGCGCTGTACAGCCACCCGCGCGACGCGGACTGGACGCCGGCGCCGCGCTGTCGCTACGGGGAGCGCTGCACGCGCCGCGACCCGCGCCACCGCCGCGACTACCTGCACCCCGCGCCCGCGCCCGCGCCCGCGGACCCACCAGGTACCTACCTACTTGTTGTACTTGTGTTTAGCTTTATCATACATCAATTAGTAGCTCGCCCATCAATATGGGTTAATAGGGCATGTTTTTATTTTATTTGA

Protein

MEFKLVRIDTSEPQKIDLPEGTHIIGRGKFIVNDAEDMRVSRNHAEIEVTDTCVILKSLHQNPCFYIDKLSNSKRTLTQNNAQLLCNGDKFGILPDTYWFELIWCSSDVMKNDVTSNSTPADNKEIPNELRATQEYNLNETNGLQETVEEGEAPQTLKEQSLEKQSESPQKSSQDEIVGKRSITSEDCNNSSESKRLKIKNEEESGDEARGHEDSSVAGPSCDQHKEEQNDNGEVKDQNTSQNSNHDGAQGIKSPRERCMYGANCYRRNPQHAALYSHPRDADWTPAPRCRYGERCTRRDPRHRRDYLHPAPAPAPADPPGTYLLVVLVFSFIIHQLVARPSIWVNRACFYFI

Uniprot

H9J558   S4P4D6   A0A2H1V4S3   A0A2W1BYG2   D6WPU5   A0A1Y1LH13   + More
A0A1Y1LC91   A0A067RFR2   A0A2Z5TR56   A0A2J7R9Q7   A0A182YRN0   U5EYH5   A0A1S4FT51   A0A2M4AGX5   A0A2M4AH10   A0A2M4AGP4   A0A0L7QXC6   A0A2M4BRS8   A0A182HAY0   A0A195C6J7   A0A1Q3F836  

Pubmed

19121390    23622113    28756777    18362917    19820115    28004739    + More
24845553    26760975    25244985    26483478   

EMBL

BABH01040713    BABH01040714    GAIX01006019    JAA86541.1    ODYU01000452    SOQ35264.1    + More
KZ149906    PZC78277.1    KQ971354    EFA06173.2    GEZM01060134    JAV71255.1    GEZM01060135    JAV71254.1    KK852498    KDR22686.1    FX985749    BBA93636.1    NEVH01006580    PNF37562.1    GANO01000294    JAB59577.1    GGFK01006722    MBW40043.1    GGFK01006743    MBW40064.1    GGFK01006628    MBW39949.1    KQ414704    KOC63273.1    GGFJ01006542    MBW55683.1    JXUM01123666    JXUM01123667    JXUM01123668    KQ566743    KXJ69863.1    KQ978205    KYM96462.1    GFDL01011387    JAV23658.1   

Proteomes

UP000005204    UP000007266    UP000027135    UP000235965    UP000076408    UP000053825    + More
UP000069940    UP000249989    UP000078542   

PRIDE

H9J558   

Pfam

PF10283   zf-CCHH        + More
PF17913   FHA_2

Interpro

IPR000253   FHA_dom        + More
IPR019406   APLF_PBZ       
IPR008984   SMAD_FHA_dom_sf       
IPR039253   APLF       
IPR041388   FHA_2       

SUPFAM

SSF49879   SSF49879       

CDD

cd00060  FHA

ProteinModelPortal

H9J558   S4P4D6   A0A2H1V4S3   A0A2W1BYG2   D6WPU5   A0A1Y1LH13   + More
A0A1Y1LC91   A0A067RFR2   A0A2Z5TR56   A0A2J7R9Q7   A0A182YRN0   U5EYH5   A0A1S4FT51   A0A2M4AGX5   A0A2M4AH10   A0A2M4AGP4   A0A0L7QXC6   A0A2M4BRS8   A0A182HAY0   A0A195C6J7   A0A1Q3F836  

PDB

5W7Y     E-value=1.84185e-07,     Score=132

KEGG

101738395    K13295 aprataxin and PNK-like factor [EC:4.2.99.18] | (RefSeq) aprataxin and PNK-like factor

GO

GO:0003906   GO:0006302   GO:0008408   GO:0005634   GO:0035861   GO:0005515   GO:0015629   GO:0030833   GO:0043565   GO:0043401   GO:0006418   GO:0016020   GO:0006260  

PANTHER

PTHR21315  

Length:

353

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

10.63655

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02459

outside

1  -  353

 

 

Pi

20.415514

Theta

21.181125

Tajima's D

-0.846852

CLR

1.84026

CSRT

0.165691715414229

Interpretation

Uncertain