Silkworm Genome Informatics Database

Gene

KWMTBOMO06904

Pre Gene Modal

BGIBMGA014357

Annotation

gag-pol_polyprotein?_partial_[Lasius_niger]

Location

Bomo_Chr11(-):19452578-19455505 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.41

CDS

ATGGATTCTACAGTTTATGCAGCCAATGGTGAAAAAATGAAAGCACAAGGATCAGGTACTGTCCATGGAATGTCATGCGATTTACAAAATACTTTATTTATACCAGACCTAGCACAAAACCTTTTGTCTGTAAATTGTATTACCAACAATGATGGCTCTGTTGTGTTCACAAAGAATCAAGTGGAGATTTACAAAAATTCAAAATTAATTTTAACCGGCAAAAAAGAAAATGGCTTATACAGGGTGAATTTAGAACAAGAACTGAAAAATAAAAATAAATCCTTACTTACACAAGTAAATGGAACAGCATTAGAATGGCATGCAAAACTGGGACACCCAGGTAAATCAGTACTAGAAACACTAACAAAAGTTGCAGACGGCATAAATATACAAGGACCAAAAGTATTACAAGAACAGTGTAAAATATGTGCTGAAGCAAAACAGTCAAGACTACCATTTAATACAATCAGAACTCGTGCTGAAAGGTACCTACAAATAATACACACAGACTTATGTGGTCCCTTCGAGGAAAAGACTCATGATGGATATAGATATGTATTAACAATAATGGACGACTACAGTCATTTTACAAAAATCTATTTACTTAAAAACAAGAGCGATGCAAAAGAAGAAATTAAAAATTATATTGAAGAAACGGAGCAAGAGAAAAATAGTAAAGTATCGACTATAAGATGCGACAACGGAGGTGAATATACAAGTAACGATTTTAAAGCATTTTGTCAACAAAAAGGTATAAAATTAGACTACACAGTACCCTACTCACCACAATTAAATGGCAAAGCTGAACGCCTAAACCGGACATTATTAGAAAAAACAAGAGCATTACTCTTTGATTCTAAATTGAACAAAGAAATGTGGGGTGAAGCAATATATTGTGCTACTTATATTTTAAACAGACTACCAAGTGATGCCCTGAAAAACAAAACACCATATGAAATGTGGGTTGGAAAAAAGCCTAATATATCTAATATGCAAAAGTTTGGTTCTACTGTCTATGCAAAACAGTTACATCCAAATGTAAAGAAACTGGATCCTAGAAGCAAGAAACTGACAATGATTGGATACACTAATAATGGGTACAGACTGTGGAATGACAAGGAGAGAAAAATAGAGATATCAAGGGACATAGTGATAGTAAAAAGTGAAATTGAACAAAAGAAAGAAAACTATAAGAAAATAAATAATAATAAAAGTGAAAATTATGAAAAAGAGACAGACCAGGAAGAGACAACAGAAAACCAGGAAGAGACTATAGACAACCAGAAAGAGACAACAGAAAACCAGGAACAGATTATAGAACAGCAGGAAGAGACAACAGAAGATACCAGAACAGAAGATAATAAAAATGATGAGACTTATGAAGATGTAGTATCAGAAACTGAATCAGAAGACACACAAAGAGAACGAAACAGACAGAATGAAGAAGACGGTTACCTAAGAAGAAGCAAGAGAATTAAACACATACCAATACATTTAAAAGACTACAGTTTACTTACTTACAGAGAGGCTGTAACATCTAAAGAGGGAAAAAACTGGGAGAAGGCCATAAATTCGGAGAAGGAATCCTTGGAAATCAATAATACCTGGGAAGTAGTAGACAAGAAAGAGGCAAAAGATAGTAAAATACTTACAAACAAATGGGTATTCCGTGTGAAAGATAATGGGACTTATAAAGCTAGACTTGTTGTACGAGGATTTGAACAAAACAGTATTGACTACAATGAAATATACAGTCCAGTTGTCAGTCAGTCAACTTTAAAATCTTTATTTGCACTTGCTGCTTCTAAAGACTATAACATGATGACATTTGATGTTAAGACTGCATTTTTATATGGAGAGCTGGAAGAAAATGTGTATATGAATATACCGGATGGTTATGAAAAACAACCTGGGAAAGTTTGTCGATTAAAGAAATCCTTATATGGACTAAAACAAGCTCCTATTACATGGAACAAAAGATTTACAAAAGCAATGTTAAAACTTGGTTTAAAAGCTACTAAAACAGATCAGTGTGTATTTACAAATGAAGATAATACAATAATAATAGCAATCTATGTAGATGATGGACTTGCTTTGGCTAAAGAAAATCAAACATTAAAAAACATTTTAAACTGCTTAGAAAAGGAATTTGAAATAAAAGTATACAATGATCCTACTACTTTTATTGGATTTGAAGTCAAGAAGACTGAGAAAGGTATAACACTGAAACAAGAAAGCTACATTGGAAACTTATTAAAGAAATTCAGTATGGAAGATTCTAAACCTGTTAAGACTCCCTGTAACACAGAAAATAAAACAGAAACGCAAAACACAGATTCTATAAATTTTCCATATAGAGAACTGATTGGAGGACTTCTATATGTATCTACAAGAACAAGGCCAGACATAAGTCAAGCTGTAAATGAAGCAAGCAGAAAAATAGAAAACCCTACGAAAGATGATGTGATAGCTGCAAAGAAAATACTAAAATATTTAAATGGAACAAGACAGAAAGGAATCATGTACAAGAAAGGAGGAGATATGTCAAAACTAAATGCATACTGTGATGCAGACTATGCCAATTGTATCAAGACTAGACGCAGTACAACCGGATTTGTGATAATGTTAGCAGAAGGACCTGTGTCTTGGTGTTCAAAACGACAACCAATCGTTGCATTATCATCAACTGAAGCAGAGTATATTGCAGCAGCTGATTGCTGTAAGGAATGTTTATATTTAATGTCATTTTTAAAGGAGTTGATTGGTTCTGAAGTTGAAATTACATTAACCAAAGCGCTATTCAGCTGA

Protein

MDSTVYAANGEKMKAQGSGTVHGMSCDLQNTLFIPDLAQNLLSVNCITNNDGSVVFTKNQVEIYKNSKLILTGKKENGLYRVNLEQELKNKNKSLLTQVNGTALEWHAKLGHPGKSVLETLTKVADGINIQGPKVLQEQCKICAEAKQSRLPFNTIRTRAERYLQIIHTDLCGPFEEKTHDGYRYVLTIMDDYSHFTKIYLLKNKSDAKEEIKNYIEETEQEKNSKVSTIRCDNGGEYTSNDFKAFCQQKGIKLDYTVPYSPQLNGKAERLNRTLLEKTRALLFDSKLNKEMWGEAIYCATYILNRLPSDALKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLTMIGYTNNGYRLWNDKERKIEISRDIVIVKSEIEQKKENYKKINNNKSENYEKETDQEETTENQEETIDNQKETTENQEQIIEQQEETTEDTRTEDNKNDETYEDVVSETESEDTQRERNRQNEEDGYLRRSKRIKHIPIHLKDYSLLTYREAVTSKEGKNWEKAINSEKESLEINNTWEVVDKKEAKDSKILTNKWVFRVKDNGTYKARLVVRGFEQNSIDYNEIYSPVVSQSTLKSLFALAASKDYNMMTFDVKTAFLYGELEENVYMNIPDGYEKQPGKVCRLKKSLYGLKQAPITWNKRFTKAMLKLGLKATKTDQCVFTNEDNTIIIAIYVDDGLALAKENQTLKNILNCLEKEFEIKVYNDPTTFIGFEVKKTEKGITLKQESYIGNLLKKFSMEDSKPVKTPCNTENKTETQNTDSINFPYRELIGGLLYVSTRTRPDISQAVNEASRKIENPTKDDVIAAKKILKYLNGTRQKGIMYKKGGDMSKLNAYCDADYANCIKTRRSTTGFVIMLAEGPVSWCSKRQPIVALSSTEAEYIAAADCCKECLYLMSFLKELIGSEVEITLTKALFS

Uniprot

NA

ProteinModelPortal

NA

PDB

3S3N E-value=1.36405e-08, Score=146

KEGG

101745397 K19673 tetratricopeptide repeat protein 21B | (RefSeq) tetratricopeptide repeat protein 21B-like

GO

GO:0015074 GO:0003676 GO:0008270 GO:0043565 GO:0004812 GO:0006418 GO:0016020 GO:0005634 GO:0006260

Length:

935

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00098

Exp number, first 60 AAs:

0.00045

Total prob of N-in:

0.00005

outside

1 - 935

Pi

2.504047

Theta

5.328723

Tajima's D

-1.98249

CLR

72.24335

CSRT

0.0122493875306235

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree