Gene

KWMTBOMO06900

Pre Gene Modal

BGIBMGA007548

Annotation

retroelement_polyprotein_[Glyptapanteles_flavicoxis]

Location

Bomo_Chr11(+):19067906-19072287      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.914

CDS

ATGAGTGAGCCTTGTGATGGAGTTGGTGGCGTCAGTTTATCTGACGTCACCTTTTCCAAAAATTCTCCGGAGGTCGGTGCGCCGTCATCAGAAGTGGGATCACCTCCCACTTCTGCTCGCCCTTCTGGCTCGGTTAACAAAAATATGAACACTTCTGTTGATGGGGTGCCGGCTGATTTTTTCACTCAGATGTTGCAAATGATGAAACACGTGTCGGATCGTATGACGTCGCAATCAGATATTTCAAAAGTGAGAATAAATGACGTGTTTTTGCCGTCATACGATCCAGACGCTAATGTTGGGGTTAGAGAATGGTGTCAACATGTGACCATAGCTATGGAAACTTACAACCTGAGCGATTATGAAGTCCGGATGAAGGCTGGTAGTTTGCTTAAGGGTCGCGCAAGGTTGTGGGTTGACAATTGGCTGGTGTCCACCACCACGTGGCAAGAATTGCGTGATGTTTTAATTTCGACTTTTGAACCGGAAAACCGATATTCACGCGATGTTGTGCGTTTTAGAGAACATATTTACGATAATTCTAAAGACATCGCTCAGTTCTTATCACAAGCTTGGGTTTTATGGAGACGTATTACTAAAGATAAGTTGTCGAATGATGACGCGGTTGAGGCTGTTATCGGTTGCATTGGGGATGAGCGCCTGAGAATCGAATTGTTAAATGCGCGAGCTACATCTGTCCCAGAACTTATTTCAGTGGCCTCATCTATAAAAAGTGTTAAACGTCCTCATCCCAATGCATCGATACCGCATCAGAGTGTCGCAAAGCGCCCACGTTTTGATGAGACACCGGGCTTTTGCCAAATCTGTAAAAGGTCGGGTCACGATACGCGTGATTGCCGATACCACGACAAACCTGAAGGCCCTCAGCCGCGACAACAGGATGGTAAAACTACTCCTCCAGGTGTTGGTAGACCGACATGTACGTTTTGTTCAAGGTTGGGTCATACTTATCAAACGTGTTACAAGCGAGAACGTGCAGTTGTTTCTAATGTCAATTGTGTGGGGACGTCAAAATTAAATGCGATGCCAGTTGTTGTAGGAGGTTTCAAAATTAATGCAATTTTTGATAGTGGAGCCGAATGTTCAGTCATTCGTGAATCTGTAGCTGCAAAGTTGCCGGGAAAACGCGTTGATAGGGTTAGCTATTTGAAAGCTCTCGGTCAATTTACGGTTGTCTCGCTTTCAACATTAACAACAGTTTGCATAATCGACAACTTGCGCGTAGAACTAGAGTTTCACGTCGTTTCCGATATTGAAGTGAGCTCTGATATTTTGATAGGCATTAATTTGATAGAAAATACGAACCTAAGCGTTGTTGTAAATTCACGAGGTGCAATGCTGGTTCATCAACCGATCATTTACCACATGCGATCTCAAAGCCCAAAATTTGGCAAATTAGATTGTGACTTAATCAATGACAATCAGATTAGCGAGTTAAAAATATTGCTGAACAAGTTCGAACACTTGTTTATTCATGGCTACCCGCATACGCGAGTTAATACGGGTGAGCTAGAGATTCGATTAAAGGACGAAAGTAAGACAGTGGAGCGTAGGCCCTATCGGCTTAGTCCAGTTGAACGGGAAAAAGTTCGCGATATCGTTAACGAATTGCTTGAGCATAAAATAATTCGGGAAAGTAAATCTCCTTTTGCAAGCCCAATAATTATAGTTAAAAAGAAAAACGGCAAAGATCGTATGTGTGTAGACTACCGAGAGTTAAATAGGAATACCGTCAGGGACCATTATCCCTTACCGATAATCTCAGACCAAATAGACCAACTGGCCGGGGGTATTTATTTCACCACAATTGACATGGCAGCTGGGTTTCATCAGATACCTATTTCGGAGGGATCAATTGAAAAGACTGCTTTTGTAACTCCCGATGGTTTATATGAATACCTAACTATGCCATTTGGACTTTGCAACGCGGTGTCAGTCTACCAGCGCTGCATTAATAGGGCTCTCGCTCATCTCACGAGCTCACCAGACCAAGTGTGCCAGGTCTATGTCGATGATGTGCTCTCAAAGTGTAAAGATTTTGATCAGGGCTTATCCCATATTGAACGCATATTGATTGCTCTACAAGAAGCTGGCTTTTCTATTAACGTTGATAAAACCGCCTTCTTTAAACGCTCCATCGAGTACTTGGGCAATATAATTGCCGACGGGCAGGTCAGCCCTAGCCCAAGAAAGGTGGAGGCTTTAACGAAGGCACCAATCCCGAAAACTGTCAAACAAGTTAGACAATTCAATGGCCTGGCTGGATATTTCAGACGTTTCATTCCCAACTTCTCGCGAGTTATGGCGCCTTTATATGAACTCACTAAGAACGATACGACATGGGAATGGAACGAAAGGCATGACGAAGCTAGGGATTATATTGTCAAACATCTGTCTACTGCGCCTACCCTTACGCTATTCCAGGAAGACGCACCCATCGAACTCTACACGGACGCCAGCAGCATCGGCTACGGGGCAGTGTTAGTGCAGACATTCGCGGGTCGCCAACATCCAGTCGCGTACATGAGCCAGCGCACCACCGACGCCGAGAGCCGCTACCACTCTTACGAACTTGAAACGTTGGCGGTCGTAAGAGCAATTAAGCATTTTCGGCATTACCTCTACGGCCGAAAATTCAAGGTAATAACCGACTGTAATGCTCTCAAGGCCTCCAAAAACAAAAAGGACTTGCTTCCGCGTATCCATCGGTGGTGGGCGTTTTTGCAAAACTACGAATTCGAGGTGGAGTATAGGAAAGGTGAGCGATTACAGCACGCAGACTTTTTCAGTAGAAACCCTTGCAGCGAGATGTCAGTTAACGTTATGACTCGAGATATGGAATGGCTGCAGATTGAGCAGCACCGCGATGACGTGCTACGCCCAATGATGGAGAGTATAACATCTGGCGATTCCATCGAAGGCTATGTCATGGAAGATGGCATACTTAAGAAAATGCTCACAGATCCTATACTCGGCATACATAAACCAATTGTAGTGCCTAAGTCTTTCCAGTGGAGCTTGATAAACTCCTTCCACGTGACACTGCAGCACCCAGGATGGGAGAAAACTCTGCAGAAGCTACGAGAAACGTACTGGTTTGACAAGATGAACTCGGCTGTTAGACGTTTTGTAGACCATTGTGTTATATGTAGAACCTCGAAAGGACCATCTGGTTCTATACAAGCGCAGCTCCATCCGATCCAGAAACCCACGGCAGCGTTCCAGGTCATTCATATGGACATCACAGGAAAATTGGGCACGAGAAACTCCGAAGGACAATATGAGTACGTAATTGTTGCTATTGACGCATTCACGAAATACATATTACTGAGCTATTCCAATGACAAGAGCCCGAGCAGTACACTCGCGGCACTCAAGCGTGTCATTCACCTGTTTGGCACCCCGGTACAAGTGGTGGTTGATGGCGGTCGGGAGTTTCTCGGCGAGTTCAAAGTCTACACTGACCGCATAGGGATTGACGTGCATTCAACTGCGCCAGGAACAAGCCGAGCAAACGGACAGGTCGAAAGGGTCATGGGCACATTGAAAAATGCCCTTACCATGATCAAAAACTACAGTACTCAAGACTGGCAGACGGCGCTGGAAGCTTTACAGCTCGCTTTCAACTGCACGCCACATCGAGTGACAGGAGTAGCTCCGCTCACTCTCCTGACCCGCCGACAACATTGCATACCGCCAGAGTTACTAAGGTTGGTGAATATTGAGAACGAATGCATAGATTTTGATCTGCTCGAGCAACACGTACGACAGAAAATGATTGATGCGGCGCAATACAACAAGCAACGCTTCGACAGAGGCAAGGCGAAATTGCGCCCATTTCAACGAGGCGACTACGTACTCGTCAAGAACAATACTCGTAACCAGACATCCCTCGACCTCAAATACAGTGAGCCGTATGAAGTATGCAGAATCCTGGACAACGATCGGTACATCATCAAGCGAGTGACCGGCAGAGGGCGCCCTCGTAAAGTCGCCCACGACCAGTTGCGCCGAGCGCCCCAGCCCGGCGAGCAGGACACCGTGTCGACGGACAGTGTAGAGGACCCGAGCGACAACCGGCGAGCGTGCCGGCCGACGAGACTGAAACAGATGCCACATCTCGGCCCCAGCCCCTGCCGTCTACCTCGCGAGCTGCCCAGGCCTTGGATGCTTAATGGTTAG

Protein

MSEPCDGVGGVSLSDVTFSKNSPEVGAPSSEVGSPPTSARPSGSVNKNMNTSVDGVPADFFTQMLQMMKHVSDRMTSQSDISKVRINDVFLPSYDPDANVGVREWCQHVTIAMETYNLSDYEVRMKAGSLLKGRARLWVDNWLVSTTTWQELRDVLISTFEPENRYSRDVVRFREHIYDNSKDIAQFLSQAWVLWRRITKDKLSNDDAVEAVIGCIGDERLRIELLNARATSVPELISVASSIKSVKRPHPNASIPHQSVAKRPRFDETPGFCQICKRSGHDTRDCRYHDKPEGPQPRQQDGKTTPPGVGRPTCTFCSRLGHTYQTCYKRERAVVSNVNCVGTSKLNAMPVVVGGFKINAIFDSGAECSVIRESVAAKLPGKRVDRVSYLKALGQFTVVSLSTLTTVCIIDNLRVELEFHVVSDIEVSSDILIGINLIENTNLSVVVNSRGAMLVHQPIIYHMRSQSPKFGKLDCDLINDNQISELKILLNKFEHLFIHGYPHTRVNTGELEIRLKDESKTVERRPYRLSPVEREKVRDIVNELLEHKIIRESKSPFASPIIIVKKKNGKDRMCVDYRELNRNTVRDHYPLPIISDQIDQLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTPDGLYEYLTMPFGLCNAVSVYQRCINRALAHLTSSPDQVCQVYVDDVLSKCKDFDQGLSHIERILIALQEAGFSINVDKTAFFKRSIEYLGNIIADGQVSPSPRKVEALTKAPIPKTVKQVRQFNGLAGYFRRFIPNFSRVMAPLYELTKNDTTWEWNERHDEARDYIVKHLSTAPTLTLFQEDAPIELYTDASSIGYGAVLVQTFAGRQHPVAYMSQRTTDAESRYHSYELETLAVVRAIKHFRHYLYGRKFKVITDCNALKASKNKKDLLPRIHRWWAFLQNYEFEVEYRKGERLQHADFFSRNPCSEMSVNVMTRDMEWLQIEQHRDDVLRPMMESITSGDSIEGYVMEDGILKKMLTDPILGIHKPIVVPKSFQWSLINSFHVTLQHPGWEKTLQKLRETYWFDKMNSAVRRFVDHCVICRTSKGPSGSIQAQLHPIQKPTAAFQVIHMDITGKLGTRNSEGQYEYVIVAIDAFTKYILLSYSNDKSPSSTLAALKRVIHLFGTPVQVVVDGGREFLGEFKVYTDRIGIDVHSTAPGTSRANGQVERVMGTLKNALTMIKNYSTQDWQTALEALQLAFNCTPHRVTGVAPLTLLTRRQHCIPPELLRLVNIENECIDFDLLEQHVRQKMIDAAQYNKQRFDRGKAKLRPFQRGDYVLVKNNTRNQTSLDLKYSEPYEVCRILDNDRYIIKRVTGRGRPRKVAHDQLRRAPQPGEQDTVSTDSVEDPSDNRRACRPTRLKQMPHLGPSPCRLPRELPRPWMLNG

Uniprot

B7S8P8   A0A0A9WJJ8   A0A0A9Z954   A0A0A9X1Z8   A0A146M2J2   Q24310   + More
A0A146KXF1   A0A0A9WTW7   A0A0A9WUU5   A0A0J7KEC9   A0A023EY26   A0A0J7K890   X1X5H2   A0A0J7K9X8   X1WPP0   A0A2S2P032   A0A1Y1MFA9   A0A1W7R6G2   A0A1W7R6L8   J9JJ45   A0A0J7KLK4   A0A023EZG2   A0A023EYH9   A0A0J7NF11   A0A2S2NKJ2   J9LBS9   J9JZ77   T1PMR9   A0A2S2NFQ4   A0A023EYF0   A0A2S2PGQ9   A0A023F013   A0A0A1XB16   X1XU14   A0A224XHR1   A0A034VAM6   A0A034VPR8   J9JQ65   W8APB2   W8C8Q1   W8B0V9   A0A1W7R6H1   A0A2S2P2K5   A0A2M4AEU2   Q24262   A0A0J7KJ08   A0A2S2N9B2  

Pubmed

25401762    26823975    2464689    25474469    28004739    25830018    + More
25348373    24495485    8055714   

EMBL

EF710649    ACE75273.1    GBHO01036023    GBHO01032007    JAG07581.1    JAG11597.1    + More
GBHO01040010    GBHO01001812    JAG03594.1    JAG41792.1    GBHO01030786    JAG12818.1    GDHC01004980    JAQ13649.1    X14037    CAA32198.1    GDHC01018907    JAP99721.1    GBHO01032415    JAG11189.1    GBHO01032413    JAG11191.1    LBMM01008871    KMQ88569.1    GBBI01004477    JAC14235.1    LBMM01011782    KMQ86633.1    ABLF02004401    ABLF02013544    ABLF02013550    LBMM01010976    KMQ87102.1    ABLF02033943    ABLF02042737    GGMR01009949    MBY22568.1    GEZM01033083    JAV84424.1    GEHC01000888    JAV46757.1    GEHC01000930    JAV46715.1    ABLF02008401    ABLF02008404    LBMM01005919    KMQ91096.1    GBBI01004551    JAC14161.1    GBBI01004550    JAC14162.1    KMQ91095.1    GGMR01005091    MBY17710.1    ABLF02041876    ABLF02014660    ABLF02042774    KA649989    AFP64618.1    GGMR01003388    MBY16007.1    GBBI01004549    JAC14163.1    GGMR01016004    MBY28623.1    GBBI01004613    JAC14099.1    GBXI01005773    JAD08519.1    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    GFTR01008753    JAW07673.1    GAKP01019383    JAC39569.1    GAKP01014483    JAC44469.1    ABLF02005846    GAMC01020207    JAB86348.1    GAMC01007326    JAB99229.1    GAMC01015907    JAB90648.1    GEHC01000876    JAV46769.1    GGMR01011041    MBY23660.1    GGFK01005990    MBW39311.1    Z27119    CAA81643.1    LBMM01006880    KMQ90234.1    GGMR01000717    MBY13336.1   

Proteomes

UP000036403    UP000007819   

PRIDE

Q24310    Q24262   

Pfam

PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF00665   rve
PF00098   zf-CCHC
PF00078   RVT_1
PF17917   RT_RNaseH
PF00077   RVP
PF02037   SAP
PF03732   Retrotrans_gag
PF09668   Asp_protease
PF13873   Myb_DNA-bind_5
PF16064   DUF4806

Interpro

IPR041577   RT_RNaseH_2        + More
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR041373   RT_RNaseH       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR018061   Retropepsins       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR005162   Retrotrans_gag_dom       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR028002   Myb_DNA-bind_5       
IPR032071   DUF4806       
IPR034145   RP_RTVL-H-like       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       
SSF68906   SSF68906       

Gene 3D

2.40.70.10     3.30.420.10     1.10.720.30    

CDD

cd06095  RP_RTVL_H_like

ProteinModelPortal

B7S8P8   A0A0A9WJJ8   A0A0A9Z954   A0A0A9X1Z8   A0A146M2J2   Q24310   + More
A0A146KXF1   A0A0A9WTW7   A0A0A9WUU5   A0A0J7KEC9   A0A023EY26   A0A0J7K890   X1X5H2   A0A0J7K9X8   X1WPP0   A0A2S2P032   A0A1Y1MFA9   A0A1W7R6G2   A0A1W7R6L8   J9JJ45   A0A0J7KLK4   A0A023EZG2   A0A023EYH9   A0A0J7NF11   A0A2S2NKJ2   J9LBS9   J9JZ77   T1PMR9   A0A2S2NFQ4   A0A023EYF0   A0A2S2PGQ9   A0A023F013   A0A0A1XB16   X1XU14   A0A224XHR1   A0A034VAM6   A0A034VPR8   J9JQ65   W8APB2   W8C8Q1   W8B0V9   A0A1W7R6H1   A0A2S2P2K5   A0A2M4AEU2   Q24262   A0A0J7KJ08   A0A2S2N9B2  

PDB

4OL8     E-value=1.25193e-72,     Score=700

KEGG

105841862    no KO assigned | (RefSeq) uncharacterized LOC105841862

GO

GO:0003676   GO:0008270   GO:0015074   GO:0004190   GO:0008233   GO:0003964   GO:0006508   GO:0006436   GO:0004812   GO:0006418   GO:0016020   GO:0005634   GO:0006260  

Length:

1400

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00676999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00026

outside

1  -  1400

 

 

Pi

11.360465

Theta

16.866666

Tajima's D

-1.028499

CLR

39.691183

CSRT

0.133993300334983

Interpretation

Uncertain