Gene

KWMTBOMO06893  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012007

Annotation

TAR_DNA_binding_protein_homolog_[Bombyx_mori]

Location

Bomo_Chr11(+):18913901-18915031      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.11 PlasmaMembrane   Reliability : 1.163

CDS

ATGACGGAGTACGTGCCGGTAAGCGAGGGCGAGCAAGACGAGCCCATTGAGCTGCCAACCGAAGAAGACGGCTCGCTGCTACTGTCGACCGTGGCAGCGCAGTTCGCAGGTGCCAGCGGCCTGAAGTACCGAGTGAACGGGAGACTACGCGGCGTACGCCTCGTCGACGAGCGCCTGTCACCACCGGCGGAGGGCTGGCCGGCCTACCGATATTGGTGTGCCTTCCCACGCGCGGAATCGCCGCCGCCTCGACCACGATGCTCCGATCTTATAGTTCTCGGCTTACCATGGAAGACGACAGAAGAAGCTGTACGAGATTACTTCTCCTCCTTTGGCGATTTGCTGATGGTTCAAGTAAAACGCGATACGCGCACCGGACTATCCAAAGGTTTTGGCTTCATCAAATTCGCCGAGTACGAAGCTCAACTGCGTGCATTAGGCCGCCGACACATGATAGACGGGCGCTGGTGCGATGTTCGCATCCCGAACGGCAAGGACGGCTCGTCGACGGCTCATCGAAAGGTATTCGTCGGCCGTTGTACGGAGAATATTACAGCCGAAGATCTCAGAGAGTACTTCGGCTCCTTTGGTCAAGTGACAGATGTGTTTGTGCCGCGACCCTTTCGTGCATTCAGCTTTGTGACGTTTCTTGACCCAGAAGTAGCAAGGTCCTTGTGTGGACAAGATCATATTATAAAAGGTGTGTCAGTAAACATTTCAACAGCATCACCAAAGCGCGAAAGGTCCACTACTGCAGCCAGTGGGCTCGGCTGGGGCCGTATGCTTGGCTGGCCAGCTGATGCATGGCCACTCCCGGCACCCCATCCCCTCGAGTCAAAGCCCTACCTCAAATACGAGTAA

Protein

MTEYVPVSEGEQDEPIELPTEEDGSLLLSTVAAQFAGASGLKYRVNGRLRGVRLVDERLSPPAEGWPAYRYWCAFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWCDVRIPNGKDGSSTAHRKVFVGRCTENITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCGQDHIIKGVSVNISTASPKRERSTTAASGLGWGRMLGWPADAWPLPAPHPLESKPYLKYE

Uniprot

H9JR47   Q1HDZ2   A0A2H1WGD2   A0A2W1BC91   A0A2A4JD38   S4P175   + More
A0A194QV33   A0A212FM15   A0A194Q9L2   A0A0L7KN35   A0A2H1VAS8   A0A0L7KS51   A0A0L8HEQ9   A0A0T6BDA3   A0A1Y1N911   A0A2T7PUB6   V9ICK0   A0A1Y1NDZ0   A0A0B7A1I3   A0A0Q9WQA6   D6WYQ8   Q9W1I0   A0A1Y1NCY2   R7TFC3   T1J0V8   A0A194QKQ3   O97469   B4I8U6   B4QB08   A0A1I8PU82   A0A1B6F1X4   B4PA81   E0W1D8   A0A1B6FIW6   A0A1D2MYP4   Q8SXP8   A0A1W4V1I0   B3NPT7   H9JBD7   A0A1B6EET0   A0A1I8PU56   A0A1E1W3L5   A0A1B6DH86   O97468   A0A0R3P1I8   A0A3B0JKJ8   A0A1B6J4B6   A0A1B6FA14   V5GJJ3   A0A0P5ETW0   K7J2F6   B4MRQ1   A0A1B6MTC6   A0A0P5GIW9   A0A1W4UZX8   A0A212EIJ4   A0A1B6IJ03   A0A1B6DFI4   A0A1W4UMZ9   A0A0A9Z220   A0A0P5H4E6   V5HVY6   A0A0Q9W423   A0A194PK77   A0A0P5G601   A0A2T7PSN6   A0A336M2M6   A0A131ZA78   A0A0P6E442   B3MEM3   A0A023GB93   A0A336MQ24   B4KMD9   B4J632   A0A3B0JD50   B4GCQ9   Q29CQ4   A0A0P5JNR3   T1HYV6   A0A067RFQ3   A0A0Q9W4P3   A0A1B6CB61   A0A224XBX8   A0A069DV00   A0A2J7QU24   A0A0P5GU05   A0A210PJN0   V5GVK5   A0A0K8TS76   A0A0P6DBT1   B4LNX4   A0A3S0ZIL9   A0A195EHV4   F4W8F4   A0A195FB69   A0A158NK58   A0A151X6Y2   A0A0P5GQY4   A0A0B7A069   A0A131Y1K6  

Pubmed

19121390    30836863    28756777    23622113    26354079    22118469    + More
26227816    28004739    17994087    18362917    19820115    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    23254933    10191082    22936249    17550304    20566863    27289101    26109357    26109356    18057021    15632085    20075255    25401762    26823975    25765539    26830274    23185243    24845553    26334808    28812685    26369729    21719571    21347285   

EMBL

BABH01039741    BABH01039742    BABH01039743    BABH01039744    DQ497205    MH745576    + More
ABF55970.1    QBM91283.1    ODYU01008482    SOQ52121.1    KZ150147    PZC72882.1    NWSH01002002    PCG69464.1    GAIX01009031    JAA83529.1    KQ461185    KPJ07416.1    AGBW02007695    OWR54729.1    KQ459252    KPJ02202.1    JTDY01008189    KOB64688.1    ODYU01001561    SOQ37948.1    JTDY01006591    KOB65854.1    KQ418333    KOF87728.1    LJIG01001651    KRT85289.1    GEZM01009643    JAV94434.1    PZQS01000002    PVD37008.1    JR038232    AEY58171.1    GEZM01009641    JAV94436.1    HACG01027076    CEK73941.1    CH963850    KRF98137.1    KQ971357    EFA08408.2    AE013599    AAF47080.2    GEZM01009642    JAV94435.1    AMQN01014735    KB311222    ELT89721.1    AFFK01020674    KQ461198    KPJ06102.1    AB010261    AB019707    BAA34430.1    CH480824    EDW57021.1    CM000362    CM002911    EDX08445.1    KMY96135.1    GECZ01025510    JAS44259.1    CM000158    EDW92407.1    KRK00493.1    KRK00494.1    KRK00495.1    KRK00496.1    DS235870    EEB19444.1    GECZ01019627    JAS50142.1    LJIJ01000375    ODM98169.1    AY089497    BT022083    AAF47078.2    AAF47079.2    AAL90235.1    AAM68274.1    AAY33499.1    ACZ94552.1    ACZ94553.1    CH954179    EDV56878.1    KQS63062.1    KQS63063.1    KQS63064.1    KQS63065.1    BABH01030827    GEDC01000870    JAS36428.1    GDQN01009477    JAT81577.1    GEDC01012251    JAS25047.1    AB019705    AB019706    BAA34429.1    CH475433    KRT05136.1    OUUW01000001    SPP73151.1    GECU01013681    GECU01001932    JAS94025.1    JAT05775.1    GECZ01022742    JAS47027.1    GALX01004197    JAB64269.1    GDIQ01268046    JAJ83678.1    EDW74790.1    GEBQ01000785    JAT39192.1    GDIQ01240888    JAK10837.1    AGBW02014631    OWR41291.1    GECU01020815    JAS86891.1    GEDC01012861    JAS24437.1    GBHO01007744    GBRD01016884    GDHC01004483    JAG35860.1    JAG48943.1    JAQ14146.1    GDIQ01239198    JAK12527.1    GANP01005900    JAB78568.1    CH940648    KRF79811.1    KQ459606    KPI91500.1    GDIQ01248928    JAK02797.1    PVD36397.1    UFQT01000450    SSX24495.1    GEDV01000314    JAP88243.1    GDIQ01082847    JAN11890.1    CH902619    EDV35487.1    KPU75688.1    KPU75689.1    GBBM01003962    JAC31456.1    UFQT01001404    SSX30397.1    CH933808    EDW09827.1    KRG04921.1    CH916367    EDW01890.1    SPP73150.1    CH479181    EDW31507.1    EAL29286.2    KRT05137.1    KRT05138.1    KRT05139.1    KRT05140.1    GDIQ01222142    JAK29583.1    ACPB03009442    KK852531    KDR21878.1    KRF79809.1    KRF79810.1    KRF79812.1    KRF79813.1    GEDC01026808    JAS10490.1    GFTR01006510    JAW09916.1    GBGD01001362    JAC87527.1    NEVH01011190    PNF32092.1    GDIQ01242648    JAK09077.1    NEDP02076495    OWF36684.1    GALX01004198    JAB64268.1    GDAI01000818    JAI16785.1    GDIQ01081294    JAN13443.1    EDW61143.1    RQTK01000497    RUS78651.1    KQ978881    KYN27833.1    GL887908    EGI69445.1    KQ981693    KYN37626.1    ADTU01018711    ADTU01018712    ADTU01018713    ADTU01018714    KQ982472    KYQ56079.1    GDIQ01243892    JAK07833.1    HACG01027077    CEK73942.1    GEFM01002423    JAP73373.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000053268    UP000037510    + More
UP000053454    UP000245119    UP000007798    UP000007266    UP000000803    UP000014760    UP000001292    UP000000304    UP000095300    UP000002282    UP000009046    UP000094527    UP000192221    UP000008711    UP000001819    UP000268350    UP000002358    UP000008792    UP000007801    UP000009192    UP000001070    UP000008744    UP000015103    UP000027135    UP000235965    UP000242188    UP000271974    UP000078492    UP000007755    UP000078541    UP000005205    UP000075809   

PRIDE

H9JR47    Q1HDZ2    Q9W1I0    O97469    Q8SXP8    H9JBD7    + More
O97468    V5HVY6   

Pfam

PF00076   RRM_1        + More
PF18694   TDP43_N

Interpro

IPR035979   RBD_domain_sf        + More
IPR041105   TDP43_N       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR036047   F-box-like_dom_sf       
IPR040394   FBX25/32       
IPR000504   RRM_dom       

SUPFAM

SSF81383   SSF81383        + More
SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

H9JR47   Q1HDZ2   A0A2H1WGD2   A0A2W1BC91   A0A2A4JD38   S4P175   + More
A0A194QV33   A0A212FM15   A0A194Q9L2   A0A0L7KN35   A0A2H1VAS8   A0A0L7KS51   A0A0L8HEQ9   A0A0T6BDA3   A0A1Y1N911   A0A2T7PUB6   V9ICK0   A0A1Y1NDZ0   A0A0B7A1I3   A0A0Q9WQA6   D6WYQ8   Q9W1I0   A0A1Y1NCY2   R7TFC3   T1J0V8   A0A194QKQ3   O97469   B4I8U6   B4QB08   A0A1I8PU82   A0A1B6F1X4   B4PA81   E0W1D8   A0A1B6FIW6   A0A1D2MYP4   Q8SXP8   A0A1W4V1I0   B3NPT7   H9JBD7   A0A1B6EET0   A0A1I8PU56   A0A1E1W3L5   A0A1B6DH86   O97468   A0A0R3P1I8   A0A3B0JKJ8   A0A1B6J4B6   A0A1B6FA14   V5GJJ3   A0A0P5ETW0   K7J2F6   B4MRQ1   A0A1B6MTC6   A0A0P5GIW9   A0A1W4UZX8   A0A212EIJ4   A0A1B6IJ03   A0A1B6DFI4   A0A1W4UMZ9   A0A0A9Z220   A0A0P5H4E6   V5HVY6   A0A0Q9W423   A0A194PK77   A0A0P5G601   A0A2T7PSN6   A0A336M2M6   A0A131ZA78   A0A0P6E442   B3MEM3   A0A023GB93   A0A336MQ24   B4KMD9   B4J632   A0A3B0JD50   B4GCQ9   Q29CQ4   A0A0P5JNR3   T1HYV6   A0A067RFQ3   A0A0Q9W4P3   A0A1B6CB61   A0A224XBX8   A0A069DV00   A0A2J7QU24   A0A0P5GU05   A0A210PJN0   V5GVK5   A0A0K8TS76   A0A0P6DBT1   B4LNX4   A0A3S0ZIL9   A0A195EHV4   F4W8F4   A0A195FB69   A0A158NK58   A0A151X6Y2   A0A0P5GQY4   A0A0B7A069   A0A131Y1K6  

PDB

4BS2     E-value=2.90642e-61,     Score=595

KEGG

733054    no KO assigned | (RefSeq) TBPH; TAR DNA binding protein homolog

GO

GO:0003723   GO:0003677   GO:0045292   GO:0000381   GO:0005634   GO:0016607   GO:0008582   GO:1990605   GO:0008345   GO:0048471   GO:0033143   GO:0007417   GO:1900006   GO:0040011   GO:0003729   GO:0007416   GO:0031673   GO:0033119   GO:0045886   GO:0008344   GO:0007274   GO:0007528   GO:0043524   GO:2000331   GO:0007626   GO:0003697   GO:0072553   GO:0007628   GO:0070507   GO:0016021   GO:0000166   GO:0003676   GO:0000154   GO:0008649   GO:0022891   GO:0043565   GO:0016567   GO:0016020   GO:0006260  

PANTHER

PTHR13123  

Length:

286

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04053

Exp number, first 60 AAs:

0.0393

Total prob of N-in:

0.01747

outside

1  -  286

 

 

Pi

13.540588

Theta

14.900509

Tajima's D

-0.181419

CLR

2.184121

CSRT

0.325333733313334

Interpretation

Uncertain