Gene

KWMTBOMO06887

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr11(-):18768682-18770790      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.426 PlasmaMembrane   Reliability : 1.305

CDS

ATGTGTTGTGCGACAAAACTAACTAAATCGCAGCCCGGCCCGGATGGTGTCCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTAGGGGACCGACTCTTGAGACTTTACAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTCGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCCGGGTACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTAGTCGGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTAGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTCCAGGGGTGGGGTGGCTTTGGCGGTGTCGCTCGATATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAACGACATAGAGTGCCCCCCTACCTTCGCCGGCTGGTGGGTTCCTACTTAGAGGACAGATCGGTCACGTGTACCGGACACGGTGGGATCCTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCCCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGAGGTGCCCTCCTCCCGGGCCTGAGCGTTATCTGTTACGCAGACGACACGTTGGTCGTGGCCCGGGGGGGAGTTTTGCTGAGTCTGCCCGTCTTGCTACGGCTGGGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCATATCGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTGGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCCTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGCGGAGGCGCTCGCCGCTGACTATAAGTGGCGGGCTGACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGGCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGTTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCAGAGCATACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAACCGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAATCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCAAGCCCTGGCCCTCTAA

Protein

MCCATKLTKSQPGPDGVHGRVWALALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLVGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGVLLSLPVLLRLGPRRVPPVDAHIVVGGVHIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYKWRADLRARGVARPSPSVVRARRGQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGTDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQSRRRRAGAREADLAQALAL

Uniprot

Q868Q4   A0A2W1C3J5   A0A0J7KS67   A0A0J7N7S8   A0A0J7KLT9   A0A0J7KIY5   + More
A0A2S2N8I2   A0A0J7KYD2   A0A0J7NEG9   A0A2S2PBP5   A0A0J7NAV8   A0A0J7JZ13   J9LJ80   A0A2S2PEZ7   A0A2S2NJ82   A0A2H8TIE5   J9JWJ3   A0A0J7KL06   A0A0J7MY17   A0A2S2P488   J9LVU7   X1WT13   A0A2S2PEU2   X1WMW4   A0A2S2NQQ6   J9KNG8   X1WXT5   J9KNN8   A0A142LX45   X1WSG8   A0A0J7KIS5   J9M6A5   J9M402   Q868S8   J9JZR8   J9KT61   Q868S0   A0A0J7K7P2   J9LB02   A0A034WR48   Q868S2   J9LQQ1   J9M8F6   A0A2H8THF8  

Pubmed

12644555    28756777    25527032    25348373   

EMBL

AB090825    BAC57926.1    KZ149896    PZC78733.1    LBMM01003679    KMQ93242.1    + More
LBMM01008682    KMQ88705.1    LBMM01005733    KMQ91252.1    LBMM01006954    KMQ90166.1    GGMR01000779    MBY13398.1    LBMM01002052    KMQ95336.1    LBMM01006110    KMQ90925.1    GGMR01014195    MBY26814.1    LBMM01007425    KMQ89740.1    LBMM01019839    KMQ83438.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    GGMR01015159    MBY27778.1    GGMR01004600    MBY17219.1    GFXV01002090    MBW13895.1    ABLF02013358    ABLF02013361    ABLF02054869    LBMM01006063    KMQ90967.1    LBMM01014122    KMQ85315.1    GGMR01011682    MBY24301.1    ABLF02034925    ABLF02014378    GGMR01015354    MBY27973.1    ABLF02059310    GGMR01006838    MBY19457.1    ABLF02005203    ABLF02041316    ABLF02004854    ABLF02041317    ABLF02023257    KU543683    AMS38371.1    ABLF02004597    ABLF02041324    LBMM01006977    KMQ90149.1    ABLF02020969    ABLF02028779    AB090813    BAC57902.1    ABLF02009709    ABLF02009711    ABLF02009073    ABLF02030702    ABLF02042963    AB090817    BAC57910.1    LBMM01012322    LBMM01012138    KMQ86282.1    KMQ86387.1    ABLF02011136    ABLF02014426    GAKP01002292    JAC56660.1    AB090816    BAC57908.1    ABLF02030663    ABLF02041312    ABLF02034556    GFXV01001748    MBW13553.1   

Proteomes

UP000036403    UP000007819   

PRIDE

Q868Q4   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF00098   zf-CCHC
PF13966   zf-RVT
PF13359   DDE_Tnp_4
PF12017   Tnp_P_element
PF00075   RNase_H

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR026960   RVT-Znf       
IPR021896   Transposase_37       
IPR027806   HARBI1_dom       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

Q868Q4   A0A2W1C3J5   A0A0J7KS67   A0A0J7N7S8   A0A0J7KLT9   A0A0J7KIY5   + More
A0A2S2N8I2   A0A0J7KYD2   A0A0J7NEG9   A0A2S2PBP5   A0A0J7NAV8   A0A0J7JZ13   J9LJ80   A0A2S2PEZ7   A0A2S2NJ82   A0A2H8TIE5   J9JWJ3   A0A0J7KL06   A0A0J7MY17   A0A2S2P488   J9LVU7   X1WT13   A0A2S2PEU2   X1WMW4   A0A2S2NQQ6   J9KNG8   X1WXT5   J9KNN8   A0A142LX45   X1WSG8   A0A0J7KIS5   J9M6A5   J9M402   Q868S8   J9JZR8   J9KT61   Q868S0   A0A0J7K7P2   J9LB02   A0A034WR48   Q868S2   J9LQQ1   J9M8F6   A0A2H8THF8  

PDB

6AR3     E-value=1.87459e-05,     Score=117

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0003964   GO:0016746   GO:0016021   GO:0003676   GO:0008270   GO:0004803   GO:0006313   GO:0004523  

Length:

587

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.85851

Exp number, first 60 AAs:

0.00979

Total prob of N-in:

0.03971

outside

1  -  587

 

 

Pi

1.231983

Theta

12.925709

Tajima's D

0

CLR

21.909504

CSRT

0.375831208439578

Interpretation

Uncertain