Gene

KWMTBOMO06882

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(-):18290652-18293152      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.451

CDS

ATGGTGGTGGATTGGAATAAGCTGGGCACGTGCCTAGCCGACGCCGCTCCGCCAATCCTCCCTTACGGCCCGGATTCGAATCCATCCCCCGAGGACACCGTCGAATCCATTAACATCATTACCGATCACATCTCTTCCGCGATCATTAGATCTTCTAAAGAAGTCGATGTGGAGGACAGCTTCCACCGCATCAGACTGTCCCCCGATCTTAGGAATCTCTTAAGAGTTAGGAACGCGGCAATCCGGGCCTACGATCGTCTTCCCACGCATTCAAACCGGATTCAGATGCGTCGTCTACAACGCGAAGTCCACTCCCGCTTAAGCGACGCGCGTAACGATAATTGGCATAGTTATTTAGAACAACTCGCGCCCTCCCACCAAGCATACTGGCGACTAGCTAGGACTCTCAAATCCGAAACTACCGCTACTATGCCTCCCCTCTTACGCCCTTCAGGCCAACCACCGGCATTCGATGACGATGACAAGGCTGAGCTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCAGGCTCCGACGGCATCCACAACCGCGCGCTAAAATTTTTGCCAGTCCAACTGATAGCAATGTTGGCTACAATTTTAAATGCCGCTATGACGCACTGCATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGTATACATAAGCCGGGCAAACCGAGAAACGAAACTTCTAGTTACCGTCCGATTAGTCTCCTCTCGACGATAGGAAAAATTTACGAACGTCTCCTTAGGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAATTCTCATAGACGAACAGTTCGGATTCCGCTCAAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATTCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGACATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATCTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCAACTGACTGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGACGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGCTGCTTCATCGGCGACTCCAGATCGCAGTAGCCACCATGGGACAGTGGTTCCGGAAGTGGCGAATAGACATCAACCCCACGAAAAGCGCAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAATATCACTTCGAGCATCCCACTCCGTAGTAGGCGCGCAAACACCTCCGCCGTTAGTCCCATCACTCTCTTTGGCCAGCCCATACCGTGGGTCTCGAAGGTCAAATATCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCTCCATATAAAAACGGTACGCGACCGCGCCGCGTTTATTCTAGGACGACTCTATCCAATGCTTTGTAGTCGAAGCAAACTGTCCCTCCGCAATAAGGTAACTCTCTACAAAACTTGTATACGCCCCGTCATGACGTATGCAAGCGTAGTGTTCGCTCACTCAGCCCGCACCCACTTGAAATCCCTTCAGGTTATTCAATCACGATTCTGCAGGATAGCCGTCGGAGCGCCATGGTTCCTTAGGAATGTGGATCTCCACGATGACCTGGAGCTCGACTCTCTTAGTAAGTATCTACAGTCGGCATCACTGCGCCATTTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGGTAAACCGTCGACGTCGCCCAAAGCACGTCATTACGGATCCTCCTGATCCATTAACGGTGCTTTTAGGCACCACAAGCACCGGTCACCGTCCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGCGAACTAA

Protein

MVVDWNKLGTCLADAAPPILPYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIQMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETTATMPPLLRPSGQPPAFDDDDKAELLADALQEQCTTSTQHADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPRNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRLHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHSARTHLKSLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSLSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDPPDPLTVLLGTTSTGHRPRRTRRLRRRARRAN

Uniprot

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNF3   V5GNJ2   A0A2S2PR14   J9KKL3   A0A023EYS8   Q07995   A0A3N5Z7I3   A0A023EZE6   A0A2S2PPK8   A0A224XF24   J9KC83   X1WLB2   A0A2S2QEE0   A0A2M4BEF4   A0A2M4BEZ9   A0A2M4BDA5   J9M522   A0A0L0CBP5   A0A2M4BD66   A0A2M4BD62   A0A2S2Q383   A0A2J7R8R8   A0A2S2Q352   J9LC21   A0A2H8U0H5   A0A2J7PDM0   J9KCZ4   A0A2M4CV52   A0A2M4BD67   V9GZF1   A0A2J7R7D0   A0A2M4CV42   A0A2M4BDV6   K7IN67   A0A1Y1LKN6   A0A023EW17   X1WZH0   X1WNI2   A0A0C9RJA4   X1WN18   A0A2S2N814   A0A2S2NGV8   A0A1Y1KFR3   A0A182GMD9   A0A1Y1KUU7   A0A224X6Q4   A0A087UCW3   A0A2J7RS81  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    8387152    30086797    26108605    1327974    20075255    24945155    26483478   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    GBBI01004395    JAC14317.1    S59870    AAB26437.2    RPOV01000134    RPJ78669.1    GBBI01004571    JAC14141.1    GGMR01018716    MBY31335.1    GFTR01008038    JAW08388.1    ABLF02033757    ABLF02042518    ABLF02057746    GGMS01006359    MBY75562.1    GGFJ01002256    MBW51397.1    GGFJ01002257    MBW51398.1    GGFJ01001842    MBW50983.1    ABLF02024246    JRES01000644    KNC29657.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    GGMS01002992    MBY72195.1    NEVH01006721    PNF37225.1    GGMS01002955    MBY72158.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GFXV01007093    MBW18898.1    NEVH01026386    PNF14434.1    ABLF02008463    GGFL01004957    MBW69135.1    GGFJ01001858    MBW50999.1    M95171    AAA29354.1    NEVH01006736    PNF36716.1    GGFL01005012    MBW69190.1    GGFJ01001857    MBW50998.1    GEZM01053022    JAV74219.1    GAPW01000276    JAC13322.1    ABLF02034467    ABLF02008153    ABLF02008462    ABLF02008464    GBYB01008290    JAG78057.1    ABLF02021177    ABLF02027367    ABLF02066338    GGMR01000676    MBY13295.1    GGMR01003407    MBY16026.1    GEZM01084969    JAV60363.1    JXUM01014072    KQ560393    KXJ82651.1    GEZM01074951    JAV64378.1    GFTR01008279    JAW08147.1    KK119261    KFM75202.1    NEVH01000269    PNF43694.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000037069    UP000235965    UP000002358    + More
UP000069940    UP000249989    UP000054359   

PRIDE

Q9XXW0    Q93137    Q9BPQ0   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNF3   V5GNJ2   A0A2S2PR14   J9KKL3   A0A023EYS8   Q07995   A0A3N5Z7I3   A0A023EZE6   A0A2S2PPK8   A0A224XF24   J9KC83   X1WLB2   A0A2S2QEE0   A0A2M4BEF4   A0A2M4BEZ9   A0A2M4BDA5   J9M522   A0A0L0CBP5   A0A2M4BD66   A0A2M4BD62   A0A2S2Q383   A0A2J7R8R8   A0A2S2Q352   J9LC21   A0A2H8U0H5   A0A2J7PDM0   J9KCZ4   A0A2M4CV52   A0A2M4BD67   V9GZF1   A0A2J7R7D0   A0A2M4CV42   A0A2M4BDV6   K7IN67   A0A1Y1LKN6   A0A023EW17   X1WZH0   X1WNI2   A0A0C9RJA4   X1WN18   A0A2S2N814   A0A2S2NGV8   A0A1Y1KFR3   A0A182GMD9   A0A1Y1KUU7   A0A224X6Q4   A0A087UCW3   A0A2J7RS81  

PDB

6AR3     E-value=0.00138922,     Score=102

KEGG

105842032    no KO assigned | (RefSeq) uncharacterized LOC105842032

GO

GO:0003964   GO:0004519  

Length:

722

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.47309

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.04504

outside

1  -  722

 

 

Pi

10.79292

Theta

11.045305

Tajima's D

0.374957

CLR

25.130413

CSRT

0.486275686215689

Interpretation

Uncertain