SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06877
Pre Gene Modal
BGIBMGA007302
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.741 Nuclear   Reliability : 1.551
 

Sequence

CDS
ATGTCATGCAATCCGACTGACCCCCGGCGCCATAGTGATCCCGGGTCACATGGTGGGAAGTATGCTACCGGCCACTGTACTGTAGACCACCAGGTAGGCAGTGGAAACTATGCAACTGGTGATGGTACTGGTAAAAGTAAAACCCAACTGAGAAAATATTTGCGTATAGGAACTTGGAATGTGAGAGGAATGTTGAAACCGGGTAAGCAGGAAGTCATCGAGAGGGAGATGTTAAGGTGCAAAATCGACATATTGGGGCTAAGTGAAGTTCATAGAAGAGGCAGCGGTCATATAAAAACTGCTAACGGGAACATCTTGTACTTTTCGGGATCGGAAAATCATAGTGGTAATGGAGTTGCTATACTTTTACCACAGAAACTTGAAAGCAGCGTGTTAGGATACAAAACACCAAGTGATCGTATTATTGCTGTTAAACTTGATGCGCGCCCCGTACCTATCAACATTGTCCAGGTGTATGCACCAACCTCCCAATCTGAAGAAATTATATCTGACCAATTCTATTTTGAATTGGATGACTTGTTGCGTACTATTCCATCTAAGGAGGTGACTGTTGTGTACGGCGATTGGAACGCGAAGGTTGGTACCACTAGAGGTGATGTATTACTCGGAGCAACAGTCGGAAACTTTGGACTTGGTGTGAGGAATGACAGAGGTGAAAAATTTCTTCAATTCTGCGTGGAAAATCAGCTGGTCATCATGAACACCTGGTTTGAACACCACCCGAGAAGGTTATATACTTGGATATCGCCATGTGGACATCGGAACCAGATTGATTATATTACCATCAAGTCTAGGTGGCGATCTTCCGTATTGAATACTAAAACACTTCCTGGTGCCGACTGCGGAAGTGACCACCAGTTGGTGGTGGCAGACTTCAGACTTCGTTTAAAAGTCATCAAGCCAAAATTTCCTATCAATATAGAACTGAATAAGCCAGCGCTGGACCATTTTCATAAAACTGTAGACATGAATATACGATCAATGCTTTGGGATCCATGTGGTTCAAGTGAAGCTAACTGGAACAATCTGAAAAAGGTTGTACTGGATACGGCTAAACGAAGCAGAGATCTACACAAAGCAGTTCCTAAACATGAAGAATGGATTAGCAAGGAGTCATGGATGTTGATAGAGAAAAGGAAAAGACTAAAAGAACAAGGCATTGTAAACAATAGTCAAAGGGAGCGCTACAATCAATTGCATGCAGAGATTCAAAGGTCTACTCGGAGAGACAGAGATGAGCACATCAATAATATGTGTGAAGAAATTGAGGGACATGCTGATAAAGTGCAGACTAAGGACCTTTTCCTGAAAGTGAAGCAGCTAACGGGTGTCTTCAAGCCGAAGAAATGGATTATCGAAGATAGTAGAGGTAACACCTTGACAGAAATGGAACATGTTTTGGAGAGGTGGAGAAACTACTGTTATGACCTATATCGCGATGAAGATAATTTATGCACCGCCAAAATATGGGATGACCACCTGGAAGAGCCTCCTATACTACTTTCTGAGGTTGAATATGCAATACAAAAACTTAAGCATAAGGTGGTTGGTCCGGATGGCGTGTCGGCAGCGATGCTTCAAAGTCTCGGTTCAGAAGGGATAAACATTATCCATCAGATATGTACCAAGATCTGGAAAACAGGCCAATGGCCCAGTGATTGGACAAAATCTGCAATAGTACCACTTCATAAGAAGGGCTCCACAGCGAAGTGTGAGAACTACCGAACTCTGTCGCTCATGTCCCACGCGAGTAAAATACTCCTTCGCATAATAAACAGCAGACTATCAGCTTTCATAGACCACCAGATACCGAGAGAACAGACTGGTTTTGTAGCTGGAAAAGGAACTCGCGAGCAAATTTTGAACGTCCGAGTGCTCATTGAGAAATTTCGCGAGTTTAACAAGCCTCTGGTGCTATGCTTTATAGATTATGCGAAGGCGTTTGACTGTGTTCGGTGGAGTAGCATGTTTGATGTGTTAATTGATATGGGCGTTCCTTCTCATCTCACACTATTGATACGGAATCTGTACCTTGATGGTTCTTGCTTCGTGAAACTGGATAATCGAGGATCTAAACCCTTCCATACAGAACGTGGAGTACGTCAGGGCTGCATTCTGTCACCCAAATTATTTAATATCTACGGCGAATACATAATGAGAAGAGCACTTGAGGGCTGGAATGGCGGTATTTCCGTGGGCGGTGAAACACTCACGAACCTGAGATACGCTGACGACACTACCATGCTTGCATCAGATGAGGAGGAAATGGCAATTCTGCTGAACCGTGTGGAAGAAGAAAGTGCTAAACTCGGTCTTAAAATCAACCACTCCAAGACCAAAATAATGATAATAGATAGAGCGCAACTTCTTCCACGTTCTGATGCACTCAGTGGCTACGAGAAAGTAGCAGAATTCATATATCTTGGGTCGCAAATAACATCCGAGGGTGGCTGCATGGGGAGATACGCCGAAGATCCGGAATGGCTAAAAGTGCGATGGCCAATCTCAGGAAGATATGGAAAAATCGTAGCATCCGATGTATAA
Protein
MSCNPTDPRRHSDPGSHGGKYATGHCTVDHQVGSGNYATGDGTGKSKTQLRKYLRIGTWNVRGMLKPGKQEVIEREMLRCKIDILGLSEVHRRGSGHIKTANGNILYFSGSENHSGNGVAILLPQKLESSVLGYKTPSDRIIAVKLDARPVPINIVQVYAPTSQSEEIISDQFYFELDDLLRTIPSKEVTVVYGDWNAKVGTTRGDVLLGATVGNFGLGVRNDRGEKFLQFCVENQLVIMNTWFEHHPRRLYTWISPCGHRNQIDYITIKSRWRSSVLNTKTLPGADCGSDHQLVVADFRLRLKVIKPKFPINIELNKPALDHFHKTVDMNIRSMLWDPCGSSEANWNNLKKVVLDTAKRSRDLHKAVPKHEEWISKESWMLIEKRKRLKEQGIVNNSQRERYNQLHAEIQRSTRRDRDEHINNMCEEIEGHADKVQTKDLFLKVKQLTGVFKPKKWIIEDSRGNTLTEMEHVLERWRNYCYDLYRDEDNLCTAKIWDDHLEEPPILLSEVEYAIQKLKHKVVGPDGVSAAMLQSLGSEGINIIHQICTKIWKTGQWPSDWTKSAIVPLHKKGSTAKCENYRTLSLMSHASKILLRIINSRLSAFIDHQIPREQTGFVAGKGTREQILNVRVLIEKFREFNKPLVLCFIDYAKAFDCVRWSSMFDVLIDMGVPSHLTLLIRNLYLDGSCFVKLDNRGSKPFHTERGVRQGCILSPKLFNIYGEYIMRRALEGWNGGISVGGETLTNLRYADDTTMLASDEEEMAILLNRVEEESAKLGLKINHSKTKIMIIDRAQLLPRSDALSGYEKVAEFIYLGSQITSEGGCMGRYAEDPEWLKVRWPISGRYGKIVASDV

Summary

EMBL
GU815090    ADF18553.1    FJ265546    ADI61814.1    FJ265559    ADI61827.1    + More
KZ150025    PZC74827.1    FJ265553    ADI61821.1    FJ265548    ADI61816.1    FJ265557    ADI61825.1    FJ265547    ADI61815.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    KZ150203    PZC72267.1    LBMM01007694    KMQ89503.1    NCKU01004395    RWS06003.1    GBBM01003639    JAC31779.1    NWSH01001998    PCG69477.1    QIAP01000240    PYX61602.1    GU815089    ADF18552.1    NEVH01025668    PNF15041.1    NEVH01017452    PNF24293.1    NEVH01021931    PNF19256.1    NEVH01013959    PNF28275.1    NEVH01015309    PNF27009.1    NEVH01002684    PNF41704.1    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    NEVH01023985    PNF17546.1    NEVH01003750    PNF40091.1    NEVH01002141    PNF42599.1    NEVH01014359    PNF27813.1    NEVH01014358    PNF27914.1    NEVH01013275    PNF29009.1    NEVH01019971    PNF22037.1    NEVH01019075    PNF22955.1    PNF27789.1    NEVH01007402    PNF35815.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    NEVH01025135    PNF15828.1    NEVH01017570    PNF23798.1    NEVH01019064    PNF23230.1    NEVH01023960    NEVH01010501    PNF17732.1    PNF32290.1    NEVH01021928    PNF19298.1    NEVH01017534    PNF24114.1    PDHN01000949    PGH37547.1    KF881087    AIJ27486.1    AHAT01016400    NEVH01012082    PNF31006.1    NEVH01021219    PNF19787.1    NEVH01020937    PNF20581.1    NEVH01005277    PNF39212.1    AHAT01010273    NEVH01017460    PNF24248.1    GFAH01000222    JAV48167.1    KF881086    AIJ27485.1    NEVH01021610    PNF19569.1    AAGJ04118689    AAGJ04161747    AFYH01196306    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    RQTK01002506    RUS68506.1    AHAT01008485    NEVH01016289    PNF26277.1    NEVH01021921    PNF19488.1    NEVH01013553    PNF28765.1    GGMR01018096    MBY30715.1    NEVH01013243    PNF29503.1    NEVH01007824    PNF35184.1    NEVH01017443    PNF24485.1    GDHC01000226    JAQ18403.1    LSMT01001244    PFX12648.1    JARK01001341    EYC29874.1    LSMT01000478    PFX17357.1    NEVH01013215    PNF29703.1    NEVH01018380    PNF23492.1    NEVH01011186    PNF32183.1    NEVH01006721    PNF37310.1    NEVH01016335    PNF25462.1    PNF37115.1    PNF37211.1    NEVH01003500    PNF40666.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
Interpro
IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR027124   Swc5/CFDP2       
IPR000637   HMGI/Y_DNA-bd_CS       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
854
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00967999999999997
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00028
outside
1  -  854
 
 

Population Genetic Test Statistics

Pi
3.137182
Theta
13.541947
Tajima's D
-1.156927
CLR
0.894622
CSRT
0.103794810259487
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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