Gene

KWMTBOMO06877

Pre Gene Modal

BGIBMGA007302

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(+):18208973-18211607      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.741 Nuclear   Reliability : 1.551

CDS

ATGTCATGCAATCCGACTGACCCCCGGCGCCATAGTGATCCCGGGTCACATGGTGGGAAGTATGCTACCGGCCACTGTACTGTAGACCACCAGGTAGGCAGTGGAAACTATGCAACTGGTGATGGTACTGGTAAAAGTAAAACCCAACTGAGAAAATATTTGCGTATAGGAACTTGGAATGTGAGAGGAATGTTGAAACCGGGTAAGCAGGAAGTCATCGAGAGGGAGATGTTAAGGTGCAAAATCGACATATTGGGGCTAAGTGAAGTTCATAGAAGAGGCAGCGGTCATATAAAAACTGCTAACGGGAACATCTTGTACTTTTCGGGATCGGAAAATCATAGTGGTAATGGAGTTGCTATACTTTTACCACAGAAACTTGAAAGCAGCGTGTTAGGATACAAAACACCAAGTGATCGTATTATTGCTGTTAAACTTGATGCGCGCCCCGTACCTATCAACATTGTCCAGGTGTATGCACCAACCTCCCAATCTGAAGAAATTATATCTGACCAATTCTATTTTGAATTGGATGACTTGTTGCGTACTATTCCATCTAAGGAGGTGACTGTTGTGTACGGCGATTGGAACGCGAAGGTTGGTACCACTAGAGGTGATGTATTACTCGGAGCAACAGTCGGAAACTTTGGACTTGGTGTGAGGAATGACAGAGGTGAAAAATTTCTTCAATTCTGCGTGGAAAATCAGCTGGTCATCATGAACACCTGGTTTGAACACCACCCGAGAAGGTTATATACTTGGATATCGCCATGTGGACATCGGAACCAGATTGATTATATTACCATCAAGTCTAGGTGGCGATCTTCCGTATTGAATACTAAAACACTTCCTGGTGCCGACTGCGGAAGTGACCACCAGTTGGTGGTGGCAGACTTCAGACTTCGTTTAAAAGTCATCAAGCCAAAATTTCCTATCAATATAGAACTGAATAAGCCAGCGCTGGACCATTTTCATAAAACTGTAGACATGAATATACGATCAATGCTTTGGGATCCATGTGGTTCAAGTGAAGCTAACTGGAACAATCTGAAAAAGGTTGTACTGGATACGGCTAAACGAAGCAGAGATCTACACAAAGCAGTTCCTAAACATGAAGAATGGATTAGCAAGGAGTCATGGATGTTGATAGAGAAAAGGAAAAGACTAAAAGAACAAGGCATTGTAAACAATAGTCAAAGGGAGCGCTACAATCAATTGCATGCAGAGATTCAAAGGTCTACTCGGAGAGACAGAGATGAGCACATCAATAATATGTGTGAAGAAATTGAGGGACATGCTGATAAAGTGCAGACTAAGGACCTTTTCCTGAAAGTGAAGCAGCTAACGGGTGTCTTCAAGCCGAAGAAATGGATTATCGAAGATAGTAGAGGTAACACCTTGACAGAAATGGAACATGTTTTGGAGAGGTGGAGAAACTACTGTTATGACCTATATCGCGATGAAGATAATTTATGCACCGCCAAAATATGGGATGACCACCTGGAAGAGCCTCCTATACTACTTTCTGAGGTTGAATATGCAATACAAAAACTTAAGCATAAGGTGGTTGGTCCGGATGGCGTGTCGGCAGCGATGCTTCAAAGTCTCGGTTCAGAAGGGATAAACATTATCCATCAGATATGTACCAAGATCTGGAAAACAGGCCAATGGCCCAGTGATTGGACAAAATCTGCAATAGTACCACTTCATAAGAAGGGCTCCACAGCGAAGTGTGAGAACTACCGAACTCTGTCGCTCATGTCCCACGCGAGTAAAATACTCCTTCGCATAATAAACAGCAGACTATCAGCTTTCATAGACCACCAGATACCGAGAGAACAGACTGGTTTTGTAGCTGGAAAAGGAACTCGCGAGCAAATTTTGAACGTCCGAGTGCTCATTGAGAAATTTCGCGAGTTTAACAAGCCTCTGGTGCTATGCTTTATAGATTATGCGAAGGCGTTTGACTGTGTTCGGTGGAGTAGCATGTTTGATGTGTTAATTGATATGGGCGTTCCTTCTCATCTCACACTATTGATACGGAATCTGTACCTTGATGGTTCTTGCTTCGTGAAACTGGATAATCGAGGATCTAAACCCTTCCATACAGAACGTGGAGTACGTCAGGGCTGCATTCTGTCACCCAAATTATTTAATATCTACGGCGAATACATAATGAGAAGAGCACTTGAGGGCTGGAATGGCGGTATTTCCGTGGGCGGTGAAACACTCACGAACCTGAGATACGCTGACGACACTACCATGCTTGCATCAGATGAGGAGGAAATGGCAATTCTGCTGAACCGTGTGGAAGAAGAAAGTGCTAAACTCGGTCTTAAAATCAACCACTCCAAGACCAAAATAATGATAATAGATAGAGCGCAACTTCTTCCACGTTCTGATGCACTCAGTGGCTACGAGAAAGTAGCAGAATTCATATATCTTGGGTCGCAAATAACATCCGAGGGTGGCTGCATGGGGAGATACGCCGAAGATCCGGAATGGCTAAAAGTGCGATGGCCAATCTCAGGAAGATATGGAAAAATCGTAGCATCCGATGTATAA

Protein

MSCNPTDPRRHSDPGSHGGKYATGHCTVDHQVGSGNYATGDGTGKSKTQLRKYLRIGTWNVRGMLKPGKQEVIEREMLRCKIDILGLSEVHRRGSGHIKTANGNILYFSGSENHSGNGVAILLPQKLESSVLGYKTPSDRIIAVKLDARPVPINIVQVYAPTSQSEEIISDQFYFELDDLLRTIPSKEVTVVYGDWNAKVGTTRGDVLLGATVGNFGLGVRNDRGEKFLQFCVENQLVIMNTWFEHHPRRLYTWISPCGHRNQIDYITIKSRWRSSVLNTKTLPGADCGSDHQLVVADFRLRLKVIKPKFPINIELNKPALDHFHKTVDMNIRSMLWDPCGSSEANWNNLKKVVLDTAKRSRDLHKAVPKHEEWISKESWMLIEKRKRLKEQGIVNNSQRERYNQLHAEIQRSTRRDRDEHINNMCEEIEGHADKVQTKDLFLKVKQLTGVFKPKKWIIEDSRGNTLTEMEHVLERWRNYCYDLYRDEDNLCTAKIWDDHLEEPPILLSEVEYAIQKLKHKVVGPDGVSAAMLQSLGSEGINIIHQICTKIWKTGQWPSDWTKSAIVPLHKKGSTAKCENYRTLSLMSHASKILLRIINSRLSAFIDHQIPREQTGFVAGKGTREQILNVRVLIEKFREFNKPLVLCFIDYAKAFDCVRWSSMFDVLIDMGVPSHLTLLIRNLYLDGSCFVKLDNRGSKPFHTERGVRQGCILSPKLFNIYGEYIMRRALEGWNGGISVGGETLTNLRYADDTTMLASDEEEMAILLNRVEEESAKLGLKINHSKTKIMIIDRAQLLPRSDALSGYEKVAEFIYLGSQITSEGGCMGRYAEDPEWLKVRWPISGRYGKIVASDV

Uniprot

D5LB39   D7F161   D7F174   A0A2W1BNH4   D7F168   D7F163   + More
D7F172   D7F162   D7F175   D7F167   A0A2W1BGD9   A0A3Q1NFT8   A0A0J7KGF7   A0A3Q1MS18   A0A3Q1MD43   A0A3S3P648   A0A023GD30   A0A3Q1MMZ0   A0A2A4JBK9   A0A3Q1LLN0   A0A2V9X8L4   D5LB38   A0A2J7PFC5   A0A2J7Q6T5   A0A2J7PSH5   A0A2J7QI56   A0A2J7QEJ0   A0A2J7RLI7   A0A2J7PQA3   A0A2J7PMJ3   A0A2J7RGX2   A0A2J7RP47   A0A2J7QGX8   A0A2J7QH51   A0A2J7QKB0   A0A2J7Q0C6   A0A2J7Q2Z3   A0A2J7QGT4   A0A2J7R4R4   A0A2J7QGJ2   A0A2J7PHM9   A0A2J7Q5D5   A0A2J7Q3T8   A0A2J7QUN7   A0A2J7PSI0   A0A2J7Q6A8   A0A2B7ZXS2   A0A076N1B6   W5MT28   H2YWZ5   A0A2J7QR01   A0A2J7PTY0   A0A2J7PW81   A0A2J7REE7   W5MT59   A0A2J7Q6P7   A0A1W7RAL1   A0A076N3Z4   A0A2J7PTB8   H3J6U9   H3A4I6   A0A146LUY8   A0A3S0Z3I7   W5NGM3   A0A3B1KH88   A0A2J7QCG2   A0A2J7PT27   A0A2J7QJJ9   A0A2S2PMS6   A0A2J7QLQ1   A0A2J7R2Y0   A0A2J7Q7C6   A0A146MF87   A0A2B4R8E3   A0A016VQL3   A0A2B4RLZ4   A0A2J7QMC5   A0A2J7Q4I0   A0A2J7QUD0   A0A2J7R901   A0A2J7R8G1   A0A2J7R8P5   A0A2J7RIL8  

Pubmed

20470440    28756777    19393038    9215903    26823975    25329095    + More
25730766   

EMBL

GU815090    ADF18553.1    FJ265546    ADI61814.1    FJ265559    ADI61827.1    + More
KZ150025    PZC74827.1    FJ265553    ADI61821.1    FJ265548    ADI61816.1    FJ265557    ADI61825.1    FJ265547    ADI61815.1    FJ265560    ADI61828.1    FJ265552    ADI61820.1    KZ150203    PZC72267.1    LBMM01007694    KMQ89503.1    NCKU01004395    RWS06003.1    GBBM01003639    JAC31779.1    NWSH01001998    PCG69477.1    QIAP01000240    PYX61602.1    GU815089    ADF18552.1    NEVH01025668    PNF15041.1    NEVH01017452    PNF24293.1    NEVH01021931    PNF19256.1    NEVH01013959    PNF28275.1    NEVH01015309    PNF27009.1    NEVH01002684    PNF41704.1    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    NEVH01023985    PNF17546.1    NEVH01003750    PNF40091.1    NEVH01002141    PNF42599.1    NEVH01014359    PNF27813.1    NEVH01014358    PNF27914.1    NEVH01013275    PNF29009.1    NEVH01019971    PNF22037.1    NEVH01019075    PNF22955.1    PNF27789.1    NEVH01007402    PNF35815.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    NEVH01025135    PNF15828.1    NEVH01017570    PNF23798.1    NEVH01019064    PNF23230.1    NEVH01023960    NEVH01010501    PNF17732.1    PNF32290.1    NEVH01021928    PNF19298.1    NEVH01017534    PNF24114.1    PDHN01000949    PGH37547.1    KF881087    AIJ27486.1    AHAT01016400    NEVH01012082    PNF31006.1    NEVH01021219    PNF19787.1    NEVH01020937    PNF20581.1    NEVH01005277    PNF39212.1    AHAT01010273    NEVH01017460    PNF24248.1    GFAH01000222    JAV48167.1    KF881086    AIJ27485.1    NEVH01021610    PNF19569.1    AAGJ04118689    AAGJ04161747    AFYH01196306    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    RQTK01002506    RUS68506.1    AHAT01008485    NEVH01016289    PNF26277.1    NEVH01021921    PNF19488.1    NEVH01013553    PNF28765.1    GGMR01018096    MBY30715.1    NEVH01013243    PNF29503.1    NEVH01007824    PNF35184.1    NEVH01017443    PNF24485.1    GDHC01000226    JAQ18403.1    LSMT01001244    PFX12648.1    JARK01001341    EYC29874.1    LSMT01000478    PFX17357.1    NEVH01013215    PNF29703.1    NEVH01018380    PNF23492.1    NEVH01011186    PNF32183.1    NEVH01006721    PNF37310.1    NEVH01016335    PNF25462.1    PNF37115.1    PNF37211.1    NEVH01003500    PNF40666.1   

Proteomes

UP000009136    UP000036403    UP000285301    UP000218220    UP000247801    UP000235965    + More
UP000018468    UP000007875    UP000007110    UP000008672    UP000271974    UP000018467    UP000225706    UP000024635   

PRIDE

D5LB39    D7F161    D7F174    D7F168    D7F163    D7F172    + More
D7F162    D7F175    D7F167    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR027124   Swc5/CFDP2       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB39   D7F161   D7F174   A0A2W1BNH4   D7F168   D7F163   + More
D7F172   D7F162   D7F175   D7F167   A0A2W1BGD9   A0A3Q1NFT8   A0A0J7KGF7   A0A3Q1MS18   A0A3Q1MD43   A0A3S3P648   A0A023GD30   A0A3Q1MMZ0   A0A2A4JBK9   A0A3Q1LLN0   A0A2V9X8L4   D5LB38   A0A2J7PFC5   A0A2J7Q6T5   A0A2J7PSH5   A0A2J7QI56   A0A2J7QEJ0   A0A2J7RLI7   A0A2J7PQA3   A0A2J7PMJ3   A0A2J7RGX2   A0A2J7RP47   A0A2J7QGX8   A0A2J7QH51   A0A2J7QKB0   A0A2J7Q0C6   A0A2J7Q2Z3   A0A2J7QGT4   A0A2J7R4R4   A0A2J7QGJ2   A0A2J7PHM9   A0A2J7Q5D5   A0A2J7Q3T8   A0A2J7QUN7   A0A2J7PSI0   A0A2J7Q6A8   A0A2B7ZXS2   A0A076N1B6   W5MT28   H2YWZ5   A0A2J7QR01   A0A2J7PTY0   A0A2J7PW81   A0A2J7REE7   W5MT59   A0A2J7Q6P7   A0A1W7RAL1   A0A076N3Z4   A0A2J7PTB8   H3J6U9   H3A4I6   A0A146LUY8   A0A3S0Z3I7   W5NGM3   A0A3B1KH88   A0A2J7QCG2   A0A2J7PT27   A0A2J7QJJ9   A0A2S2PMS6   A0A2J7QLQ1   A0A2J7R2Y0   A0A2J7Q7C6   A0A146MF87   A0A2B4R8E3   A0A016VQL3   A0A2B4RLZ4   A0A2J7QMC5   A0A2J7Q4I0   A0A2J7QUD0   A0A2J7R901   A0A2J7R8G1   A0A2J7R8P5   A0A2J7RIL8  

KEGG

101736473    no KO assigned | (RefSeq) single-minded homolog 2

GO

GO:0004519   GO:0003964   GO:0004197   GO:0006355  

PANTHER

PTHR23227  

Length:

854

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00967999999999997

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00028

outside

1  -  854

 

 

Pi

3.137182

Theta

13.541947

Tajima's D

-1.156927

CLR

0.894622

CSRT

0.103794810259487

Interpretation

Uncertain