Gene

KWMTBOMO06868

Annotation

PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16-like_[Bombyx_mori]

Location

Bomo_Chr11(+):18033616-18039060      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.714 PlasmaMembrane   Reliability : 1.19

CDS

ATGATTGCAGCTCGAACTGAAAAATACTTTGTAAAAGCCGAGATCGATATAAATTTCGCTGCACAGTCTGTAGAGTTCAGTCTGGAGGCTGCGCAGTTCAAGGCTTTACAAATTCATCTGCAGCCAGACGAGGGCGACATTCTGATATTCATGCCAGGCCAGGAAGACATCGAAGTTACGTGCGAGGTATTAACAGAGAGACTGGGCGATTTAGACAACGCGCCCCCCCTGACCGTCCTGCCGATATACTCTCAGCTCCCCGCTGACTTGCAGGCGAAGATATTCCAGCGAGCGCCGCCCGGACAGAGGAAATGTATCGTCGCCACCAATATAGCAGAAACGTCACTGACCGTGGACGGGATCATGTACGTCATAGACTGCGGATATTGCAAGCTGAAAGTTTACAACCCGAGGATCGGTATGGACGCTTTGCAGATATATCCGGTTAGCCAGGCCAACGCCCGGCAGCGGGCGGGCCGAGCCGGGCGTACCGGCCCGGGCAAGGCCTTCTGTCTGTACACGCAGCGGCAGTACCAGCACGAGCTGCTGGCGTCCACTGTGCCGGAGATACAGAGGACGAACCTGGCCAACACCGTGCTGTTGCTCAAGTCCTTGGGCGTTGAAGACCTACTGGCTTTCCACTTCATGGATCCCCCTCCACAGGACACGATCCTGAACTCGATGTACCAGCTGTGGATCCTGGGCGCGCTGGACGGCACGGGCTCGCTGACGGCGCTCGGGCGGCAGATGGCGGAGTTCCCGCTGGACCCGGCGCAGTGCCACATGCTCATCGTGGCCGCCGACATGGGCTGCAGCGCCGAGGTGCTCATCATCGGTCAGTCTCCGACTTCCGCTGCTCAGAGCAGAATCAAAACGTGA

Protein

MIAARTEKYFVKAEIDINFAAQSVEFSLEAAQFKALQIHLQPDEGDILIFMPGQEDIEVTCEVLTERLGDLDNAPPLTVLPIYSQLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMYVIDCGYCKLKVYNPRIGMDALQIYPVSQANARQRAGRAGRTGPGKAFCLYTQRQYQHELLASTVPEIQRTNLANTVLLLKSLGVEDLLAFHFMDPPPQDTILNSMYQLWILGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIGQSPTSAAQSRIKT

Uniprot

A0A2A4K7G3   A0A194QQ24   A0A2H1WTX0   A0A212F809   A0A0T6BAL0   A0A2P8YQD4   + More
A0A1B6IRX8   A0A139WKF7   Q9VY50   A0A1A9WID0   T1I225   A0A0M4EP05   A0A1B0D762   A0A1B0BTZ1   A0A1A9VNH4   A0A1B0AFC4   A0A1A9XKI6   A0A2J7Q8P7   A0A3S2TSY8   A0A0L0CFG7   A0A1I8NLU8   A0A182SHR5   W8B600   A0A1I8NLU9   U4U7F1   T1P960   A0A182JZI4   A0A1D2N344   Q9VY54   B3NVV4   A0A1W4X3L2   B3RVZ3   A0A182P4P2   B4Q2R1   A0A182FLL1   W5JVK7   A0A1L8DH54   A0A224XH31   A0A182Y8H0   A0A182MD61   A0A182VTP7   A0A1J1INA1   A0A182NB47   A0A182RLB0   B4MEU2   A0A182L037   B4R4N0   A0A182IBU1   A0A1S4GYI5   A0A182V576   A0A0K8VII5   A0A182QLQ7   A0A182X188   Q17KN2   A0A182U2E2   A0A1S4GZ85   E0VLT3   A0A0A1WZ92   Q29GN6   A0A0A1X8I2   Q7Q4Q1   B4GVC8   A0A1Y1NAW9   A0A1W4VUB2   B0W7R4   A0A3B0K5V8   B4NBY3   B4JJA6   A0A182GP01   A0A1Q3F7K5   A0A182JED8   A0A084W6V2   W8BTI0   A0A1I8NLU6   B3N129   A0A0A9VWS9   N6TN26   V4B2P9   A0A1I8MMG7   A0A1S3I6W3   K7IWW2   A0A060Z5A7   A0A224YU24   A0A369S956   A0A0J7L9M7   A0A131Z824   A0A0L8G8R6   A0A2D4GU73   A0A2S2QPY9   A0A232FCR5   A0A0B7ADJ4   A0A2G8JEB3   A0A1Z5L0P5   A0A195ERQ9   A0A336MAT9   A0A2S2PF50   A0A195BQY3   F4WKH7   A0A158NQL4   A0A151XAZ2  

Pubmed

26354079    22118469    29403074    18362917    19820115    10731132    + More
12537568    12537572    12537573    12537574    16110336    17569856    17569867    26108605    24495485    23537049    27289101    26109357    26109356    17994087    18719581    17550304    20920257    23761445    25244985    20966253    12364791    17510324    20566863    25830018    15632085    28004739    26483478    24438588    25401762    26823975    23254933    25315136    20075255    24755649    28797301    30042472    26830274    28648823    29023486    28528879    21719571    21347285   

EMBL

NWSH01000052    PCG80177.1    KQ461185    KPJ07464.1    ODYU01011022    SOQ56501.1    + More
AGBW02009812    OWR49858.1    LJIG01002576    KRT84364.1    PYGN01000433    PSN46455.1    GECU01018011    JAS89695.1    KQ971330    KYB28331.1    AE014298    AAF48355.2    ACPB03006723    CP012528    ALC49884.1    AJVK01026680    JXJN01020416    NEVH01016949    PNF24954.1    RSAL01000006    RVE54332.1    JRES01000474    KNC30985.1    GAMC01009995    JAB96560.1    KB631759    ERL85850.1    KA645252    AFP59881.1    LJIJ01000279    ODM99474.1    AY058553    AAF48351.2    AAL13782.1    CH954180    EDV47119.1    DS985244    EDV26084.1    CM000162    EDX01655.1    ADMH02000297    ETN67065.1    GFDF01008367    JAV05717.1    GFTR01008656    JAW07770.1    AXCM01007720    CVRI01000056    CRL01699.1    CH940664    EDW63067.1    CM000366    EDX17884.1    APCN01000737    AAAB01008964    GDHF01013637    JAI38677.1    AXCN02000643    CH477222    EAT47272.1    DS235281    EEB14339.1    GBXI01010301    JAD03991.1    CH379064    EAL32073.2    GBXI01007314    JAD06978.1    EAA12175.4    CH479192    EDW26415.1    GEZM01007689    JAV94993.1    DS231855    EDS38208.1    OUUW01000015    SPP88673.1    CH964239    EDW82342.1    CH916370    EDV99658.1    JXUM01077340    KQ563003    KXJ74653.1    GFDL01011536    JAV23509.1    ATLV01020961    KE525310    KFB45946.1    GAMC01009994    JAB96561.1    CH902650    EDV30064.1    GBHO01044941    GBRD01003505    GDHC01019435    JAF98662.1    JAG62316.1    JAP99193.1    APGK01058767    KB741291    ENN70610.1    KB203854    ESO82809.1    AAZX01007595    FR927908    CDQ96909.1    GFPF01009962    MAA21108.1    NOWV01000044    RDD43091.1    LBMM01000146    KMR04745.1    GEDV01001575    JAP86982.1    KQ423217    KOF73264.1    IACJ01155790    LAA63293.1    GGMS01009989    MBY79192.1    NNAY01000459    OXU28239.1    HACG01031968    HACG01031970    CEK78833.1    CEK78835.1    MRZV01002304    PIK34049.1    GFJQ02006008    GFJQ02004971    JAW00962.1    JAW01999.1    KQ982021    KYN30564.1    UFQS01000316    UFQT01000316    SSX02787.1    SSX23158.1    GGMR01015448    MBY28067.1    KQ976419    KYM89293.1    GL888199    EGI65315.1    ADTU01023371    KQ982335    KYQ57526.1   

Proteomes

UP000218220    UP000053240    UP000007151    UP000245037    UP000007266    UP000000803    + More
UP000091820    UP000015103    UP000092553    UP000092462    UP000092460    UP000078200    UP000092445    UP000092443    UP000235965    UP000283053    UP000037069    UP000095300    UP000075901    UP000030742    UP000075881    UP000094527    UP000008711    UP000192223    UP000009022    UP000075885    UP000002282    UP000069272    UP000000673    UP000076408    UP000075883    UP000075920    UP000183832    UP000075884    UP000075900    UP000008792    UP000075882    UP000000304    UP000075840    UP000075903    UP000075886    UP000076407    UP000008820    UP000075902    UP000009046    UP000001819    UP000007062    UP000008744    UP000192221    UP000002320    UP000268350    UP000007798    UP000001070    UP000069940    UP000249989    UP000075880    UP000030765    UP000007801    UP000019118    UP000030746    UP000095301    UP000085678    UP000002358    UP000193380    UP000253843    UP000036403    UP000053454    UP000215335    UP000230750    UP000078541    UP000078540    UP000007755    UP000005205    UP000075809   

PRIDE

Q9VY50    Q9VY54   

Pfam

PF07717   OB_NTP_bind        + More
PF04408   HA2
PF00271   Helicase_C
PF00270   DEAD
PF13401   AAA_22

Interpro

IPR007502   Helicase-assoc_dom        + More
IPR027417   P-loop_NTPase       
IPR001650   Helicase_C       
IPR011709   DUF1605       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014001   Helicase_ATP-bd       
IPR003593   AAA+_ATPase       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

A0A2A4K7G3   A0A194QQ24   A0A2H1WTX0   A0A212F809   A0A0T6BAL0   A0A2P8YQD4   + More
A0A1B6IRX8   A0A139WKF7   Q9VY50   A0A1A9WID0   T1I225   A0A0M4EP05   A0A1B0D762   A0A1B0BTZ1   A0A1A9VNH4   A0A1B0AFC4   A0A1A9XKI6   A0A2J7Q8P7   A0A3S2TSY8   A0A0L0CFG7   A0A1I8NLU8   A0A182SHR5   W8B600   A0A1I8NLU9   U4U7F1   T1P960   A0A182JZI4   A0A1D2N344   Q9VY54   B3NVV4   A0A1W4X3L2   B3RVZ3   A0A182P4P2   B4Q2R1   A0A182FLL1   W5JVK7   A0A1L8DH54   A0A224XH31   A0A182Y8H0   A0A182MD61   A0A182VTP7   A0A1J1INA1   A0A182NB47   A0A182RLB0   B4MEU2   A0A182L037   B4R4N0   A0A182IBU1   A0A1S4GYI5   A0A182V576   A0A0K8VII5   A0A182QLQ7   A0A182X188   Q17KN2   A0A182U2E2   A0A1S4GZ85   E0VLT3   A0A0A1WZ92   Q29GN6   A0A0A1X8I2   Q7Q4Q1   B4GVC8   A0A1Y1NAW9   A0A1W4VUB2   B0W7R4   A0A3B0K5V8   B4NBY3   B4JJA6   A0A182GP01   A0A1Q3F7K5   A0A182JED8   A0A084W6V2   W8BTI0   A0A1I8NLU6   B3N129   A0A0A9VWS9   N6TN26   V4B2P9   A0A1I8MMG7   A0A1S3I6W3   K7IWW2   A0A060Z5A7   A0A224YU24   A0A369S956   A0A0J7L9M7   A0A131Z824   A0A0L8G8R6   A0A2D4GU73   A0A2S2QPY9   A0A232FCR5   A0A0B7ADJ4   A0A2G8JEB3   A0A1Z5L0P5   A0A195ERQ9   A0A336MAT9   A0A2S2PF50   A0A195BQY3   F4WKH7   A0A158NQL4   A0A151XAZ2  

PDB

5YZG     E-value=1.09032e-103,     Score=961

KEGG

101737321    K12815 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:3.6.4.13] | (RefSeq) pre-

GO

GO:0005524   GO:0004386   GO:0000398   GO:0034459   GO:0003723   GO:0004004   GO:0005681   GO:0000381   GO:0003676   GO:0016787   GO:0016887   GO:0008233   GO:0008026   GO:0003824   GO:0004713   GO:0043565   GO:0016567   GO:0016020   GO:0005634   GO:0006260  

Length:

292

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.19066

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.09401

outside

1  -  292

 

 

Pi

5.93431

Theta

21.069705

Tajima's D

-1.691026

CLR

0.415007

CSRT

0.0383480825958702

Interpretation

Uncertain