Gene

KWMTBOMO06866  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012071

Annotation

PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Amyelois_transitella]

Location

Bomo_Chr11(+):17939566-17950523      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.283 Nuclear   Reliability : 2.094

CDS

ATGGGAGAAGGTGAAGCCGATGAATCGGATCCGTTCGGCAACACGAGCGCGGAGTACATGGCGCGCAAGGAGGAACAAATAGAGAAACGTCGCAACAGGAAGGTGTCCGCTCAGAGACAGCAAATAGACAAGGACAACGACCTCTGGGAACGGAACAGGATGCTGACGAGCGGGGTTGTCCACGCCATCAACGTCAACAACGATATGGATGAGGAGAGCGTTGACCGCGTCCACCTGCTGGTGCACAACATCGTGCCTCCATTCCTCGACGGAAGAATCATATTCACGAAGCAGCCGGAGCCCGTGATACCGGTAAAAGATCCTACGTCGGATATGGCGGTAAACGCACGAAAAGGCTCGGCCTTAGTGAAAGCATTCCGAGAACAAAAGGAGAGACGGAAAGCTCAGAAGAAACATTGGAAATTAGAGGGAACCAAACTAGGCAACATCATGGGAATACAGAGGGAAAAAGAAGAACTCGAAGATGGCCCTACAAGAGAAGCGTACAAATACGCGGAGCATTTAGATAAAGAAGCTCAGGAACCGGAATCGAAGTCGGACTTCGTGAAGAAGATGTCCATATCGGAACAGAGGCGCTACCTGCCCGTGTTCGCCGTCCGCGAGGAGCTGCTGCAGGTCATCCGGGAGAACAACGTCGTCATCATAGTTGGCGAGACTGGCAGCGGCAAGACCACGCAGCTCACCCAGTACCTGCACGAGGAGGGGTTCAGCCGGCTCGGCATGATCGGGTGCACGCAGCCGCGCCGCGTCGCCGCCATGTCCGTCGCCAAGCGGGTCTCCGACGAGATGCACACGCGCCTCGGTGACGAGGTCGGGTACGCCATACGGTTCGAAGACTGCACATCCCCGAGCACGGTCATCAAGTACATGACGGACGGCATCCTGCTCCGCGAGGGGCTCCGGGAGCCGGACCTGGACAACTACTCCGCCATCATCATGGACGAGGCTCACGAGCGCTCACTGTCCACCGACATGCTCTTCGGGCTGCTGCGGGAGGAGTTGACGTATGCAGTTTCAGTTTTAGGTTTAAAAATTGAACCACATCCCTAA

Protein

MGEGEADESDPFGNTSAEYMARKEEQIEKRRNRKVSAQRQQIDKDNDLWERNRMLTSGVVHAINVNNDMDEESVDRVHLLVHNIVPPFLDGRIIFTKQPEPVIPVKDPTSDMAVNARKGSALVKAFREQKERRKAQKKHWKLEGTKLGNIMGIQREKEELEDGPTREAYKYAEHLDKEAQEPESKSDFVKKMSISEQRRYLPVFAVREELLQVIRENNVVIIVGETGSGKTTQLTQYLHEEGFSRLGMIGCTQPRRVAAMSVAKRVSDEMHTRLGDEVGYAIRFEDCTSPSTVIKYMTDGILLREGLREPDLDNYSAIIMDEAHERSLSTDMLFGLLREELTYAVSVLGLKIEPHP

Uniprot

A0A3S2LI38   A0A2H1VM26   A0A194Q9H8   A0A212FEH6   A0A2A4IUK7   A0A139WK28   + More
A0A0L0BUQ3   A0A0M5J3M2   A0A034V479   A0A0L0BNC5   A0A1L8DH54   E0VLT3   B4IGB1   A0A1W4X3L2   A0A1A9WID4   A0A1B0BTY7   A0A2J7Q8P7   A0A1A9VNH9   A0A1B0AFC3   A0A1A9XKJ1   U4U7F1   A0A1B0FQ58   A0A1Y1NAW9   W8BTI0   A0A0K8VII5   B4L3F7   A0A0A1X8I2   A0A0A1WZ92   A0A2R7X3G6   A0A1B6IDN1   A0A1I8NLU6   A0A1I8MMG7   B4JJA6   B4MEU2   Q17KN2   A0A1B6CER6   A0A1W4VUB2   B3N129   B3NVV4   Q9VY54   A0A0A9VWS9   B4Q2R1   Q29GN6   A0A3B0K5V8   B4GVC8   A0A2R7X3H2   T1GMH7   B4NBY3   A0A1B6MNL7   A0A1Q3F7K5   A0A1B6FES7   A0A224XH31   A0A2S2PF50   A0A1J1INA1   B0W7R4   A0A0S7KRS6   A0A2H8TP30   A0A182GP01   A0A0L8G9N3   J9K217   A0A2S2QPY9   A0A3Q0J8Y6   A0A0N8D2A9   A0A0L8G8A9   A0A1D2N2I8   A0A094LRI0   A0A091LZ02   A0A3Q0FPB7   A0A0S7KRK0   A0A0S7KSU3   A0A0P6GJA2   A0A0P5LVC4   A0A091H7P8   T1J2J4   A0A091P399   A0A087UM57   A0A0P5W4E3   A0A0P5W961   A0A0S7KQP3   A0A0L8G8R6   A0A091PDP0   A0A091T3D9   A0A091USA8   A0A2P6KFB4   G1N9I0   A0A091UWG3   G3UQK4   A0A2I0M2D4   A0A093NE87   A0A091IMC2   A0A094MP96   A0A087QKN0   A0A151P6E9   U3J6Q2   R0L3K3   U3JJ55   A0A093KB18   H0ZD38   A0A099ZCV3   A0A218USF3  

Pubmed

26354079    22118469    18362917    19820115    26108605    25348373    + More
20566863    17994087    23537049    28004739    24495485    25830018    25315136    17510324    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25401762    26823975    17550304    15632085    26483478    27289101    20838655    23371554    22293439    23749191    20360741   

EMBL

RSAL01000006    RVE54328.1    ODYU01003307    SOQ41889.1    KQ459252    KPJ02158.1    + More
AGBW02008949    OWR52097.1    NWSH01006484    PCG63401.1    KQ971330    KYB28330.1    JRES01001303    KNC23761.1    CP012528    ALC49886.1    GAKP01022387    JAC36565.1    JRES01001597    KNC21605.1    GFDF01008367    JAV05717.1    DS235281    EEB14339.1    CH480835    EDW48845.1    JXJN01005871    JXJN01020416    NEVH01016949    PNF24954.1    KB631759    ERL85850.1    CCAG010006706    CCAG010006707    GEZM01007689    JAV94993.1    GAMC01009994    JAB96561.1    GDHF01013637    JAI38677.1    CH933810    EDW07085.2    GBXI01007314    JAD06978.1    GBXI01010301    JAD03991.1    KK856724    PTY26333.1    GECU01022658    JAS85048.1    CH916370    EDV99658.1    CH940664    EDW63067.1    CH477222    EAT47272.1    GEDC01025488    JAS11810.1    CH902650    EDV30064.1    CH954180    EDV47119.1    AE014298    AY058553    AAF48351.2    AAL13782.1    GBHO01044941    GBRD01003505    GDHC01019435    JAF98662.1    JAG62316.1    JAP99193.1    CM000162    EDX01655.1    CH379064    EAL32073.2    OUUW01000015    SPP88673.1    CH479192    EDW26415.1    PTY26332.1    CAQQ02107758    CH964239    EDW82342.1    GEBQ01002431    JAT37546.1    GFDL01011536    JAV23509.1    GECZ01021155    JAS48614.1    GFTR01008656    JAW07770.1    GGMR01015448    MBY28067.1    CVRI01000056    CRL01699.1    DS231855    EDS38208.1    GBYX01200370    JAO79657.1    GFXV01003866    MBW15671.1    JXUM01077340    KQ563003    KXJ74653.1    KQ423217    KOF73265.1    ABLF02035589    ABLF02035594    ABLF02035622    GGMS01009989    MBY79192.1    GDIP01075775    JAM27940.1    KOF73266.1    LJIJ01000279    ODM99478.1    KL275805    KFZ66204.1    KK514873    KFP64396.1    GBYX01200369    JAO79658.1    GBYX01200368    JAO79659.1    GDIQ01052153    JAN42584.1    GDIQ01167594    JAK84131.1    KL524556    KFO90725.1    JH431806    KK650891    KFQ01691.1    KK120525    KFM78446.1    GDIP01091324    JAM12391.1    GDIP01089876    JAM13839.1    GBYX01200373    JAO79654.1    KOF73264.1    KK672017    KFQ05735.1    KK498154    KFQ66710.1    KL410018    KFQ93307.1    MWRG01013534    PRD25022.1    KK466251    KFQ81978.1    AKCR02000046    PKK23835.1    KL224735    KFW63188.1    KK500611    KFP09452.1    KL346988    KFZ56436.1    KL225725    KFM01784.1    AKHW03000706    KYO44593.1    ADON01131628    ADON01131629    KB744558    EOA94827.1    AGTO01021730    KL206954    KFV87519.1    ABQF01034971    ABQF01034972    KL891410    KGL78665.1    MUZQ01000150    OWK56737.1   

Proteomes

UP000283053    UP000053268    UP000007151    UP000218220    UP000007266    UP000037069    + More
UP000092553    UP000009046    UP000001292    UP000192223    UP000091820    UP000092460    UP000235965    UP000078200    UP000092445    UP000092443    UP000030742    UP000092444    UP000009192    UP000095300    UP000095301    UP000001070    UP000008792    UP000008820    UP000192221    UP000007801    UP000008711    UP000000803    UP000002282    UP000001819    UP000268350    UP000008744    UP000015102    UP000007798    UP000183832    UP000002320    UP000069940    UP000249989    UP000053454    UP000007819    UP000079169    UP000094527    UP000189705    UP000054359    UP000053283    UP000001645    UP000053872    UP000054081    UP000053119    UP000053286    UP000050525    UP000016666    UP000016665    UP000053584    UP000007754    UP000053641    UP000197619   

PRIDE

Q9VY54   

Pfam

PF00270   DEAD        + More
PF00271   Helicase_C
PF04408   HA2
PF07717   OB_NTP_bind

Interpro

IPR027417   P-loop_NTPase        + More
IPR014001   Helicase_ATP-bd       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR001650   Helicase_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR011709   DUF1605       
IPR007502   Helicase-assoc_dom       
IPR042035   DEAH_win-hel_dom       
IPR003593   AAA+_ATPase       

SUPFAM

SSF52540   SSF52540       

Gene 3D

1.10.10.2130    

CDD

cd00079  HELICc

ProteinModelPortal

A0A3S2LI38   A0A2H1VM26   A0A194Q9H8   A0A212FEH6   A0A2A4IUK7   A0A139WK28   + More
A0A0L0BUQ3   A0A0M5J3M2   A0A034V479   A0A0L0BNC5   A0A1L8DH54   E0VLT3   B4IGB1   A0A1W4X3L2   A0A1A9WID4   A0A1B0BTY7   A0A2J7Q8P7   A0A1A9VNH9   A0A1B0AFC3   A0A1A9XKJ1   U4U7F1   A0A1B0FQ58   A0A1Y1NAW9   W8BTI0   A0A0K8VII5   B4L3F7   A0A0A1X8I2   A0A0A1WZ92   A0A2R7X3G6   A0A1B6IDN1   A0A1I8NLU6   A0A1I8MMG7   B4JJA6   B4MEU2   Q17KN2   A0A1B6CER6   A0A1W4VUB2   B3N129   B3NVV4   Q9VY54   A0A0A9VWS9   B4Q2R1   Q29GN6   A0A3B0K5V8   B4GVC8   A0A2R7X3H2   T1GMH7   B4NBY3   A0A1B6MNL7   A0A1Q3F7K5   A0A1B6FES7   A0A224XH31   A0A2S2PF50   A0A1J1INA1   B0W7R4   A0A0S7KRS6   A0A2H8TP30   A0A182GP01   A0A0L8G9N3   J9K217   A0A2S2QPY9   A0A3Q0J8Y6   A0A0N8D2A9   A0A0L8G8A9   A0A1D2N2I8   A0A094LRI0   A0A091LZ02   A0A3Q0FPB7   A0A0S7KRK0   A0A0S7KSU3   A0A0P6GJA2   A0A0P5LVC4   A0A091H7P8   T1J2J4   A0A091P399   A0A087UM57   A0A0P5W4E3   A0A0P5W961   A0A0S7KQP3   A0A0L8G8R6   A0A091PDP0   A0A091T3D9   A0A091USA8   A0A2P6KFB4   G1N9I0   A0A091UWG3   G3UQK4   A0A2I0M2D4   A0A093NE87   A0A091IMC2   A0A094MP96   A0A087QKN0   A0A151P6E9   U3J6Q2   R0L3K3   U3JJ55   A0A093KB18   H0ZD38   A0A099ZCV3   A0A218USF3  

PDB

5YZG     E-value=9.65633e-119,     Score=1091

KEGG

101737463    K12815 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:3.6.4.13] | (RefSeq) pre-

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0004386   GO:0034459   GO:0003723   GO:0000398   GO:0005524   GO:0003676   GO:0000381   GO:0016887   GO:0005681   GO:0004004   GO:0071013   GO:0008026   GO:0003824   GO:0004713   GO:0043565   GO:0016567   GO:0016020   GO:0005634   GO:0006260  

Length:

356

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000970000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00564

outside

1  -  356

 

 

Pi

18.924751

Theta

14.210111

Tajima's D

-0.638049

CLR

1.508088

CSRT

0.216439178041098

Interpretation

Uncertain