SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06866  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012071
Annotation
PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 2.283 Nuclear   Reliability : 2.094
 

Sequence

CDS
ATGGGAGAAGGTGAAGCCGATGAATCGGATCCGTTCGGCAACACGAGCGCGGAGTACATGGCGCGCAAGGAGGAACAAATAGAGAAACGTCGCAACAGGAAGGTGTCCGCTCAGAGACAGCAAATAGACAAGGACAACGACCTCTGGGAACGGAACAGGATGCTGACGAGCGGGGTTGTCCACGCCATCAACGTCAACAACGATATGGATGAGGAGAGCGTTGACCGCGTCCACCTGCTGGTGCACAACATCGTGCCTCCATTCCTCGACGGAAGAATCATATTCACGAAGCAGCCGGAGCCCGTGATACCGGTAAAAGATCCTACGTCGGATATGGCGGTAAACGCACGAAAAGGCTCGGCCTTAGTGAAAGCATTCCGAGAACAAAAGGAGAGACGGAAAGCTCAGAAGAAACATTGGAAATTAGAGGGAACCAAACTAGGCAACATCATGGGAATACAGAGGGAAAAAGAAGAACTCGAAGATGGCCCTACAAGAGAAGCGTACAAATACGCGGAGCATTTAGATAAAGAAGCTCAGGAACCGGAATCGAAGTCGGACTTCGTGAAGAAGATGTCCATATCGGAACAGAGGCGCTACCTGCCCGTGTTCGCCGTCCGCGAGGAGCTGCTGCAGGTCATCCGGGAGAACAACGTCGTCATCATAGTTGGCGAGACTGGCAGCGGCAAGACCACGCAGCTCACCCAGTACCTGCACGAGGAGGGGTTCAGCCGGCTCGGCATGATCGGGTGCACGCAGCCGCGCCGCGTCGCCGCCATGTCCGTCGCCAAGCGGGTCTCCGACGAGATGCACACGCGCCTCGGTGACGAGGTCGGGTACGCCATACGGTTCGAAGACTGCACATCCCCGAGCACGGTCATCAAGTACATGACGGACGGCATCCTGCTCCGCGAGGGGCTCCGGGAGCCGGACCTGGACAACTACTCCGCCATCATCATGGACGAGGCTCACGAGCGCTCACTGTCCACCGACATGCTCTTCGGGCTGCTGCGGGAGGAGTTGACGTATGCAGTTTCAGTTTTAGGTTTAAAAATTGAACCACATCCCTAA
Protein
MGEGEADESDPFGNTSAEYMARKEEQIEKRRNRKVSAQRQQIDKDNDLWERNRMLTSGVVHAINVNNDMDEESVDRVHLLVHNIVPPFLDGRIIFTKQPEPVIPVKDPTSDMAVNARKGSALVKAFREQKERRKAQKKHWKLEGTKLGNIMGIQREKEELEDGPTREAYKYAEHLDKEAQEPESKSDFVKKMSISEQRRYLPVFAVREELLQVIRENNVVIIVGETGSGKTTQLTQYLHEEGFSRLGMIGCTQPRRVAAMSVAKRVSDEMHTRLGDEVGYAIRFEDCTSPSTVIKYMTDGILLREGLREPDLDNYSAIIMDEAHERSLSTDMLFGLLREELTYAVSVLGLKIEPHP

Summary

EMBL
RSAL01000006    RVE54328.1    ODYU01003307    SOQ41889.1    KQ459252    KPJ02158.1    + More
AGBW02008949    OWR52097.1    NWSH01006484    PCG63401.1    KQ971330    KYB28330.1    JRES01001303    KNC23761.1    CP012528    ALC49886.1    GAKP01022387    JAC36565.1    JRES01001597    KNC21605.1    GFDF01008367    JAV05717.1    DS235281    EEB14339.1    CH480835    EDW48845.1    JXJN01005871    JXJN01020416    NEVH01016949    PNF24954.1    KB631759    ERL85850.1    CCAG010006706    CCAG010006707    GEZM01007689    JAV94993.1    GAMC01009994    JAB96561.1    GDHF01013637    JAI38677.1    CH933810    EDW07085.2    GBXI01007314    JAD06978.1    GBXI01010301    JAD03991.1    KK856724    PTY26333.1    GECU01022658    JAS85048.1    CH916370    EDV99658.1    CH940664    EDW63067.1    CH477222    EAT47272.1    GEDC01025488    JAS11810.1    CH902650    EDV30064.1    CH954180    EDV47119.1    AE014298    AY058553    AAF48351.2    AAL13782.1    GBHO01044941    GBRD01003505    GDHC01019435    JAF98662.1    JAG62316.1    JAP99193.1    CM000162    EDX01655.1    CH379064    EAL32073.2    OUUW01000015    SPP88673.1    CH479192    EDW26415.1    PTY26332.1    CAQQ02107758    CH964239    EDW82342.1    GEBQ01002431    JAT37546.1    GFDL01011536    JAV23509.1    GECZ01021155    JAS48614.1    GFTR01008656    JAW07770.1    GGMR01015448    MBY28067.1    CVRI01000056    CRL01699.1    DS231855    EDS38208.1    GBYX01200370    JAO79657.1    GFXV01003866    MBW15671.1    JXUM01077340    KQ563003    KXJ74653.1    KQ423217    KOF73265.1    ABLF02035589    ABLF02035594    ABLF02035622    GGMS01009989    MBY79192.1    GDIP01075775    JAM27940.1    KOF73266.1    LJIJ01000279    ODM99478.1    KL275805    KFZ66204.1    KK514873    KFP64396.1    GBYX01200369    JAO79658.1    GBYX01200368    JAO79659.1    GDIQ01052153    JAN42584.1    GDIQ01167594    JAK84131.1    KL524556    KFO90725.1    JH431806    KK650891    KFQ01691.1    KK120525    KFM78446.1    GDIP01091324    JAM12391.1    GDIP01089876    JAM13839.1    GBYX01200373    JAO79654.1    KOF73264.1    KK672017    KFQ05735.1    KK498154    KFQ66710.1    KL410018    KFQ93307.1    MWRG01013534    PRD25022.1    KK466251    KFQ81978.1    AKCR02000046    PKK23835.1    KL224735    KFW63188.1    KK500611    KFP09452.1    KL346988    KFZ56436.1    KL225725    KFM01784.1    AKHW03000706    KYO44593.1    ADON01131628    ADON01131629    KB744558    EOA94827.1    AGTO01021730    KL206954    KFV87519.1    ABQF01034971    ABQF01034972    KL891410    KGL78665.1    MUZQ01000150    OWK56737.1   
Pfam
PF00270   DEAD        + More
PF00271   Helicase_C
PF04408   HA2
PF07717   OB_NTP_bind
Interpro
IPR027417   P-loop_NTPase        + More
IPR014001   Helicase_ATP-bd       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR001650   Helicase_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR011709   DUF1605       
IPR007502   Helicase-assoc_dom       
IPR042035   DEAH_win-hel_dom       
IPR003593   AAA+_ATPase       
SUPFAM
SSF52540   SSF52540       
Gene 3D
PDB
5YZG     E-value=9.65633e-119,     Score=1091

Ontologies

Topology

Length:
356
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000970000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00564
outside
1  -  356
 
 

Population Genetic Test Statistics

Pi
18.924751
Theta
14.210111
Tajima's D
-0.638049
CLR
1.508088
CSRT
0.216439178041098
Interpretation
Uncertain
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