Gene

KWMTBOMO06865  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012071

Annotation

PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Amyelois_transitella]

Location

Bomo_Chr11(+):17932376-17939035      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.946

CDS

ATGACCGATCCCGAAGAAAATGTCCATCGTTTGGAGGGAACTTCTGGTGACACCCCAGGTGGTTTAATCATAAGACAAAAGGATAAACCTGCAGATTTTCAATTTGCCAAGCCTTCCTTACTGGGTCTCGATAAACTGGCTGCTGCGAAACGTAAGCAGAATCGCCTTATATCGTTCCAAAACGAAGAAAACGAGGACGAAGGAACGAATGTGGATAATGTGGTGAAAGAACGTAAATACAGAAAGCACAATGAAGAAACCCCCACCTATACTGGCGGTATATCAGAGCAGGCACGGGAAAGACTCATTGAGCGGATGCAGAAAAGAGAAAAGCAAGTAAAGGAAAAAGGTGTACACAATTCTACTCAGGAAGAAAAGAAAACACAGGCCAAAGATGATGATGATTATTATCGTCATTATCACAGACGCGATAGAAGGAACAATGACTACAGAAGGAATCAGGATAGAGATAGGAGGCGAGATAGGGATGGGGACAGTAGAGATAAGGATAGAAATAGAAGTGACAGAGATAGAAGAGATCGTGATAGTGAAAGGAGTAGTTCAAGAAGAAGTTATTACAATCCTAAATTTAAAGATGAACCCAAAACCCCAAGGTAA

Protein

MTDPEENVHRLEGTSGDTPGGLIIRQKDKPADFQFAKPSLLGLDKLAAAKRKQNRLISFQNEENEDEGTNVDNVVKERKYRKHNEETPTYTGGISEQARERLIERMQKREKQVKEKGVHNSTQEEKKTQAKDDDDYYRHYHRRDRRNNDYRRNQDRDRRRDRDGDSRDKDRNRSDRDRRDRDSERSSSRRSYYNPKFKDEPKTPR

Uniprot

A0A2S2NV13   A0A1A9XKJ1   A0A2H8TP30   A0A1B0BTY7   A0A2S2PF50   A0A2S2Q735   + More
B4L3F7   A0A034V479   J9K217   A0A0K8VII5   W8BTI0   A0A2P8YQB7   A0A2S2QPY9   A0A0A1X8I2   A0A0A1WZ92   A0A1I8MMG7   A0A1B6CER6   B3NVV4   A0A1A9WID4   B4Q2R1   A0A1W4VUB2   A0A1A9VNH9   A0A1B0AFC3   Q9VY54   A0A1B0FQ58   B4MEU2   A0A1B6IDN1   A0A0L0BNC5   A0A0L0BUQ3   A0A1I8NLU6   A0A093JAH9   A0A1B6FES7   A0A1B6L298   B4NBY3   A0A1B6MNL7   A0A3Q3ACP3   A0A0S7KQT6   A0A0S7KRK0   A0A0S7KQV5   H2LUQ9   A0A0S7KQN0   A0A3B3YQB1  

Pubmed

17994087    25348373    24495485    29403074    25830018    25315136    + More
17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    17554307   

EMBL

GGMR01008289    MBY20908.1    GFXV01003866    MBW15671.1    JXJN01005871    JXJN01020416    + More
GGMR01015448    MBY28067.1    GGMS01004353    MBY73556.1    CH933810    EDW07085.2    GAKP01022387    JAC36565.1    ABLF02035589    ABLF02035594    ABLF02035622    GDHF01013637    JAI38677.1    GAMC01009994    JAB96561.1    PYGN01000433    PSN46456.1    GGMS01009989    MBY79192.1    GBXI01007314    JAD06978.1    GBXI01010301    JAD03991.1    GEDC01025488    JAS11810.1    CH954180    EDV47119.1    CM000162    EDX01655.1    AE014298    AY058553    AAF48351.2    AAL13782.1    CCAG010006706    CCAG010006707    CH940664    EDW63067.1    GECU01022658    JAS85048.1    JRES01001597    KNC21605.1    JRES01001303    KNC23761.1    KL217267    KFV75894.1    GECZ01021155    JAS48614.1    GEBQ01022150    JAT17827.1    CH964239    EDW82342.1    GEBQ01002431    JAT37546.1    GBYX01200375    JAO79652.1    GBYX01200369    JAO79658.1    GBYX01200371    JAO79656.1    GBYX01200372    JAO79655.1   

Proteomes

UP000092443    UP000092460    UP000009192    UP000007819    UP000245037    UP000095301    + More
UP000008711    UP000091820    UP000002282    UP000192221    UP000078200    UP000092445    UP000000803    UP000092444    UP000008792    UP000037069    UP000095300    UP000053875    UP000007798    UP000264800    UP000001038    UP000261480   

PRIDE

Q9VY54   

Pfam

PF04408   HA2        + More
PF00271   Helicase_C
PF07717   OB_NTP_bind
PF00270   DEAD

Interpro

IPR002464   DNA/RNA_helicase_DEAH_CS        + More
IPR027417   P-loop_NTPase       
IPR014001   Helicase_ATP-bd       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR011709   DUF1605       
IPR001650   Helicase_C       
IPR007502   Helicase-assoc_dom       
IPR042035   DEAH_win-hel_dom       

SUPFAM

SSF52540   SSF52540       

Gene 3D

1.10.10.2130    

CDD

cd00079  HELICc

ProteinModelPortal

A0A2S2NV13   A0A1A9XKJ1   A0A2H8TP30   A0A1B0BTY7   A0A2S2PF50   A0A2S2Q735   + More
B4L3F7   A0A034V479   J9K217   A0A0K8VII5   W8BTI0   A0A2P8YQB7   A0A2S2QPY9   A0A0A1X8I2   A0A0A1WZ92   A0A1I8MMG7   A0A1B6CER6   B3NVV4   A0A1A9WID4   B4Q2R1   A0A1W4VUB2   A0A1A9VNH9   A0A1B0AFC3   Q9VY54   A0A1B0FQ58   B4MEU2   A0A1B6IDN1   A0A0L0BNC5   A0A0L0BUQ3   A0A1I8NLU6   A0A093JAH9   A0A1B6FES7   A0A1B6L298   B4NBY3   A0A1B6MNL7   A0A3Q3ACP3   A0A0S7KQT6   A0A0S7KRK0   A0A0S7KQV5   H2LUQ9   A0A0S7KQN0   A0A3B3YQB1  

KEGG

101737463    K12815 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:3.6.4.13] | (RefSeq) pre-

GO

GO:0004386   GO:0005524   GO:0003676   GO:0000381   GO:0016887   GO:0005681   GO:0000398   GO:0004004   GO:0016787   GO:0003723   GO:0034459  

Length:

205

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14914

outside

1  -  205

 

 

Pi

1.683012

Theta

1.46258

Tajima's D

0

CLR

16.252294

CSRT

0.419229038548073

Interpretation

Uncertain