Silkworm Genome Informatics Database

Gene

KWMTBOMO06862

Pre Gene Modal

BGIBMGA012070

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_SINA-like_10_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr11(+):17795716-17810758 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.348

CDS

ATGATGTGTCCCATCACCGCGAACTGTTGCTCGGTTCCATTCGAAGAACTCTCCAGTCACCTTCAGTCCACGCACAACATCATTGCGGTATACTCGCAGAAGATAAAAATATTAATAGAAAACTTCCAAACGAAACTGAAGAAGACAGCTTGCTGTCGAACGAAATATAAAATAATACTGCTGCATCAGAAAAGCGCTTTCGTAATCAAAGTATGCATTTACAATTACCACGTCAAAGTTGAAGTTATGAGGAGGAAGCTAGGTTATATTGCCGATGTTAAATCGGAAACGAAAAAAAGCGAATACTGCGCTTTAGTAGAATTCCAAAGTAAAGCGCTGAGTACTAAATCGGCCATTTTAATAGAAAACGAGGCTTACGGGAAAAAAGCTGAAGTGCAATGGAGCGATGTGATCATGAAAGCTGAAAACGATGAAGCTATCACGATACACGTAAACATCGGAAAATCAGATACAGATATGCTAAGGAAAGATTGTCGTGAATCGACGTAG

Protein

MMCPITANCCSVPFEELSSHLQSTHNIIAVYSQKIKILIENFQTKLKKTACCRTKYKIILLHQKSAFVIKVCIYNYHVKVEVMRRKLGYIADVKSETKKSEYCALVEFQSKALSTKSAILIENEAYGKKAEVQWSDVIMKAENDEAITIHVNIGKSDTDMLRKDCREST

Uniprot

H9JRB0 A0A0L7KN44 A0A2A4JTK2 A0A2H1V041 A0A0L7L949 A0A1E1WAH7 + More
A0A1E1WM14 A0A212F2Q8 A0A194QAZ1 A0A194QQ16

Pubmed

19121390 26227816 22118469 26354079

EMBL

BABH01016114 BABH01016115 JTDY01008577 KOB64506.1 NWSH01000605 PCG75365.1 + More
ODYU01000068 SOQ34205.1 JTDY01002211 KOB71874.1 GDQN01007071 JAT83983.1 GDQN01002995 JAT88059.1 AGBW02010694 OWR48016.1 KQ459252 KPJ02160.1 KQ461185 KPJ07459.1

Proteomes

UP000005204 UP000037510 UP000218220 UP000007151 UP000053268 UP000053240 + More

PRIDE

H9JRB0

Pfam

PF03145 Sina

Interpro

IPR018121   7-in-absentia-prot_TRAF-dom        + More
IPR008974   TRAF-like
IPR013083   Znf_RING/FYVE/PHD
IPR013010   Znf_SIAH

SUPFAM

SSF49599 SSF49599

Gene 3D

3.30.40.10

ProteinModelPortal

H9JRB0 A0A0L7KN44 A0A2A4JTK2 A0A2H1V041 A0A0L7L949 A0A1E1WAH7 + More
A0A1E1WM14 A0A212F2Q8 A0A194QAZ1 A0A194QQ16

KEGG

101738865 no KO assigned | (RefSeq) E3 ubiquitin-protein ligase SINA-like 10

GO

GO:0008270 GO:0007275 GO:0006511 GO:0005634 GO:0046872 GO:0016874

Length:

169

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.55112

Exp number, first 60 AAs:

0.08373

Total prob of N-in:

0.29267

outside

1 - 169

Pi

26.940446

Theta

24.145126

Tajima's D

-0.853401

CLR

1.875912

CSRT

0.167941602919854

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics