Silkworm Genome Informatics Database

Gene

KWMTBOMO06858 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012069

Annotation

PREDICTED:_serine/threonine-protein_kinase_RIO1_[Papilio_machaon]

Location

Bomo_Chr11(+):17681257-17682766 View in EpiBrowser

Full name

Serine/threonine-protein kinase RIO1

Location in the cell

Nuclear Reliability : 4.369

CDS

ATGGCTAAACAAACTCATCTAGTCATTGTGATAAACTATGAACGTGATATAAGTAAAGCAAAAAAGGGTGACACAGAGGACTTAACATACAAGAAAATAGCAGGATTCAAAGAAGACCTATCAGGAACTGCCAACAGACCGGAGATTTTAGAAGAAGATGATGTTAGTGGAAGTAGTGACAGCTCTGAGGATGAAGATCGAGATGAAGAATCAGGTACAAAATTCAAGAATAGCGCGCGTCCTCGAGACGAGTCACCAAACAGTAAGAAATCAAGAAAGAAAGCGATAAAGGAAGAAAAGGCGGAAAGGAGGAAATCTAAAACGAAGAAACACGTAAAAAAGCGCAGGGACAAAGGATTCGGCAGAAAATAA

Protein

MAKQTHLVIVINYERDISKAKKGDTEDLTYKKIAGFKEDLSGTANRPEILEEDDVSGSSDSSEDEDRDEESGTKFKNSARPRDESPNSKKSRKKAIKEEKAERRKSKTKKHVKKRRDKGFGRK

Catalytic Activity

ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]

Cofactor

Mg(2+)

Similarity

Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.

Uniprot

A0A194PKV9 A0A2H1WG08 A0A0K8TNC3 A0A0J7K3W8 A0A3B0JMS3 A0A1W4W6V2 + More
E9IZ72 E2AT97 A0A088AHI7 A0A026WYW1 F4X6M0 A0A195F2F3 A0A0J9RUT1 A0A158NLC8 B4QQ90 Q9VTL5 A0A195B2B7 A0A210R522 A0A1A9ZWH2 B4HEW5 B4PFM0

EC Number

2.7.11.1

Pubmed

26354079 26369729 21282665 20798317 24508170 30249741 + More
21719571 22936249 21347285 17994087 10731132 12537568 12537572 12537573 12537574 16110336 17569856 17569867 26109357 26109356 28812685 17550304

EMBL

KQ459606 KPI91740.1 ODYU01008422 SOQ52003.1 GDAI01002168 JAI15435.1 + More
LBMM01015244 KMQ84881.1 OUUW01000002 SPP76780.1 GL767119 EFZ14131.1 GL442545 EFN63342.1 KK107063 QOIP01000005 EZA60946.1 RLU22508.1 GL888818 EGI57802.1 KQ981864 KYN34357.1 CM002912 KMY99034.1 ADTU01019320 CM000363 EDX10108.1 AE014296 AY051711 AAF50033.1 AAK93135.1 KQ976662 KYM78437.1 NEDP02000275 OWF56157.1 CH480815 EDW41134.1 CM000159 EDW94169.1

Proteomes

UP000053268 UP000036403 UP000268350 UP000192221 UP000000311 UP000005203 + More
UP000053097 UP000279307 UP000007755 UP000078541 UP000005205 UP000000304 UP000000803 UP000078540 UP000242188 UP000092445 UP000001292 UP000002282

PRIDE

Q9VTL5

Pfam

PF08423 Rad51

Interpro

IPR018935   RIO_kinase_CS        + More
IPR017407   Ser/Thr_kinase_Rio1
IPR011009   Kinase-like_dom_sf
IPR000687   RIO_kinase
IPR020588   RecA_ATP-bd
IPR013632   DNA_recomb/repair_Rad51_C
IPR027417   P-loop_NTPase

SUPFAM

SSF56112 SSF56112 + More
SSF52540 SSF52540

ProteinModelPortal

A0A194PKV9 A0A2H1WG08 A0A0K8TNC3 A0A0J7K3W8 A0A3B0JMS3 A0A1W4W6V2 + More
E9IZ72 E2AT97 A0A088AHI7 A0A026WYW1 F4X6M0 A0A195F2F3 A0A0J9RUT1 A0A158NLC8 B4QQ90 Q9VTL5 A0A195B2B7 A0A210R522 A0A1A9ZWH2 B4HEW5 B4PFM0

KEGG

101739095 K07178 RIO kinase 1 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase RIO1

PATHWAY

03008 Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0004674 GO:0005524 GO:0006281 GO:0003677 GO:0008094 GO:0060252 GO:0004672 GO:0005634 GO:0006468 GO:0005737

Length:

123

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.42615

outside

1 - 123

Pi

18.694694

Theta

17.874923

Tajima's D

0.107968

CLR

0.028418

CSRT

0.39938003099845

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics