Gene

KWMTBOMO06853

Annotation

PREDICTED:_collagen_alpha-1(XVIII)_chain_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr11(+):17611187-17620593      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.81

CDS

ATGTTCAAAGGTGAAAAAGGCGATCGGGGATTCGACGGAGTACCAGGAGTACAAGGTCCACCCGGACCTCCAGGAAAACCAGCGTCCGAACCAGTGCAGTATCTTCCTGGGCCGCCTGGCCCGCCCGGACCACCTGGTTCTCCCGGTACGCCTGGAGTATCTGTGGTGGGTCCTAAAGGTGAACCAGGGGTCAGCTATTACGAAGAGGGACCTGTCCACGGCAGTCCTAAATTCTACGGGAGACCAGTCCTCAAGAGTCCTTTAGATGAACTCAAAGCGTTGAAAGAGTTGAAAGATCTCAAAGATAAAGAACGTGATAGGGGAGGGTTCAGCGCGCGGAGTCAACCGGCGGATGAATCCAGCGCGCAGAAGACGGTTCCAGGGGCAGCCGTGTTCCAAACAACAGAAGAAATGATGAAGCTCGCCTCGTCCAGCCCGGTGGGCGCGCTGGCGTATGTTGCAGAAGAACAAGCTTTGTTCGTCAAAGTTAATTCCGGCTGGCAATATGTATTGCTTGGCTCTCTAGTGACTCAGTCGAAGCCTCCGCCGACGCCGGCGCCAGCCCCCCTACCGATGCCAGCGGCGAGCCTAGTTCATGTACCGCCTATCTCTAATCTAGTCGAAAATTCACCAACACCAATCGGTCCTAGTCTTCGCATGGCCGCGCTCAACGACCCGCTATCGGGCAATATGCACGGCGTGCGCCGCGCGGACTACGCGTGCTACAGACAGGCGCGCCGCGCGGGGCTGCGGGGGACCTTCCGAGCCTTCCTCACCAGCAGAATTCAGAATTTAGATTCGACAGTGAGATACGCGGATCGTCACCTCCCTGTCCTGAATACTCAAGGAGACGTGCTCTTCAAGTCATTCTCGGACATATTTGACGGGAGCGGAGGGATCGTGGCAGGGACCCCAAGGATCTACAGTTTCAATGGGAAAAACATCATCACTGATTCGCATTGGCCTCAGAAGTTGATATGGCACGGATCTCACGCCAGCGGGGAGAGAGCCTTGGATACCTTCTGCGAGGAATGGCAGAGTAACGATCCGACCAACAAGGGAATGGCGGCTTCACTATATTCGCACAAAATATTATCACAGGAGAGATACTCGTGTAACAATCATTTCGCCGTGCTGTGCATAGAGGCAACGTCAAATGTCAGCGTACGAAGAAAAAGAGACACCCATAGATTTAATACTACAGAAGATTCAGACGAAGACTACGAGATGAGGCCGGACGAGTACGAAGAACTGATCAACGATATAATTGCTCAACCGCTTAGATACAATTAA

Protein

MFKGEKGDRGFDGVPGVQGPPGPPGKPASEPVQYLPGPPGPPGPPGSPGTPGVSVVGPKGEPGVSYYEEGPVHGSPKFYGRPVLKSPLDELKALKELKDLKDKERDRGGFSARSQPADESSAQKTVPGAAVFQTTEEMMKLASSSPVGALAYVAEEQALFVKVNSGWQYVLLGSLVTQSKPPPTPAPAPLPMPAASLVHVPPISNLVENSPTPIGPSLRMAALNDPLSGNMHGVRRADYACYRQARRAGLRGTFRAFLTSRIQNLDSTVRYADRHLPVLNTQGDVLFKSFSDIFDGSGGIVAGTPRIYSFNGKNIITDSHWPQKLIWHGSHASGERALDTFCEEWQSNDPTNKGMAASLYSHKILSQERYSCNNHFAVLCIEATSNVSVRRKRDTHRFNTTEDSDEDYEMRPDEYEELINDIIAQPLRYN

Uniprot

A0A194R8X7   A0A3S2LUM4   A0A2A4JN08   A0A194PFE5   A0A212EPX4   A0A2H1WPZ8   + More
A0A2J7PQV7   A0A2J7PQV9   A0A1B6CYN0   A0A2R7VQX0   E2ANQ4   A0A154PPI0   A0A158P2X0   A0A195CWR9   A0A0J7L5Q2   A0A310SCJ7   E9IQA3   E2B553   A0A088A7E2   A0A195DNC4   A0A195EYZ1   A0A146LX82   A0A0L7QUX6   Q8MSE3   A0A3L8DDT4   A0A026WGC2   E1JI52   A0A1B6C4L0   A0A0P8ZT14   A0A0J9RQL3   A0A0R1DWL5   A0A069DX02   Q86BH1   B4QJW6   D3DMJ9   A0A3B0JRD7   A0A0J9RQL0   E1JI50   E1JI49   A0A0J9UFX3   A0A0P8XSJ0   A0A0J9RRR0   A0A0P9C1Y9   X2JGC3   A0A0Q5U3B7   B3M7W7   A0A1W4UTX2   A0A0R1DW12   A0A0J9RRR5   E1JIE2   A0A1W4UVL5   B2YGF8   X2JCL0   E1JIE3   B4HV09   E1JID9   E1JIE1   A0A1W4UGY8   B4PK15   A0A0R1DW77   E1JIE0   A0A0R1E193   A0A0J9RQ93   Q8MT89   A0A0J9UFW7   A0A0J9RRR9   A0A0Q5UHI2   A0A0P8XSV4   A0A0J9RQ31   M9ND55   A0A1W4UGE6   G1API4   A0A1W4UTW2   A0A1W4UGY0   A0A1W4UVK3   A0A1W4UVL0   B3NFJ4   A0A0R1DXT3   A0A1W4UGF1   G1API3   A0A0Q5U2X4  

Pubmed

26354079    22118469    20798317    21347285    21282665    26823975    + More
30249741    24508170    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17994087    22936249    17550304    26334808    19469789    26109357    26109356   

EMBL

KQ460779    KPJ12326.1    RSAL01000007    RVE54121.1    NWSH01000968    PCG73361.1    + More
KQ459606    KPI91743.1    AGBW02013361    OWR43526.1    ODYU01010161    SOQ55087.1    NEVH01022635    PNF18720.1    PNF18719.1    GEDC01018741    GEDC01004392    JAS18557.1    JAS32906.1    KK854033    PTY09904.1    GL441295    EFN64940.1    KQ435012    KZC13791.1    ADTU01007638    ADTU01007639    KQ977185    KYN05085.1    LBMM01000669    KMQ97824.1    KQ770367    OAD52666.1    GL764688    EFZ17233.1    GL445712    EFN89188.1    KQ980713    KYN14405.1    KQ981905    KYN33438.1    GDHC01007004    JAQ11625.1    KQ414734    KOC62349.1    AY118874    AAM50734.1    QOIP01000009    RLU18595.1    KK107231    EZA55023.1    AE014296    ACZ94632.1    GEDC01028857    JAS08441.1    CH902618    KPU77667.1    CM002912    KMY97992.1    CM000159    KRK01311.1    GBGD01000479    JAC88410.1    AAO41273.1    CM000363    EDX09507.1    BT120165    ADB91413.1    OUUW01000002    SPP76259.1    KMY97987.1    ACZ94628.1    ACZ94630.1    KMY97990.1    KMY98000.1    KPU77663.1    KMY97989.1    KMY97993.1    KPU77666.1    AHN57985.1    CH954178    KQS43339.1    EDV38840.2    KRK01312.1    KMY97994.1    ACZ94634.1    EU523238    ACD03747.1    AHN57987.1    ACZ94633.2    CH480817    EDW50780.1    ACZ94629.1    ACZ94627.1    EDW93695.1    KRK01305.1    ACZ94635.1    KRK01306.1    KMY97988.1    KMY97997.1    AY118310    AAM48339.1    AAO41274.2    KMY97995.1    KMY97999.1    KQS43338.1    KPU77664.1    KMY97991.1    AFH04322.1    JF411062    AEL31277.1    EDV50536.1    KRK01310.1    JF411061    AEL31276.1    KQS43342.1   

Proteomes

UP000053240    UP000283053    UP000218220    UP000053268    UP000007151    UP000235965    + More
UP000000311    UP000076502    UP000005205    UP000078542    UP000036403    UP000008237    UP000005203    UP000078492    UP000078541    UP000053825    UP000279307    UP000053097    UP000000803    UP000007801    UP000002282    UP000000304    UP000268350    UP000008711    UP000192221    UP000001292   

PRIDE

Q8MSE3    Q86BH1    E1JI49   

Pfam

PF01391   Collagen        + More
PF06482   Endostatin
PF00248   Aldo_ket_red

Interpro

IPR010515   Collagenase_NC10/endostatin        + More
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
IPR008160   Collagen       
IPR036812   NADP_OxRdtase_dom_sf       
IPR018170   Aldo/ket_reductase_CS       
IPR023210   NADP_OxRdtase_dom       
IPR001791   Laminin_G       
IPR013320   ConA-like_dom_sf       
IPR039070   COL15A1       

SUPFAM

SSF56436   SSF56436        + More
SSF51430   SSF51430       
SSF49899   SSF49899       

Gene 3D

3.10.100.10     3.20.20.100    

CDD

cd00247  Endostatin-like

ProteinModelPortal

A0A194R8X7   A0A3S2LUM4   A0A2A4JN08   A0A194PFE5   A0A212EPX4   A0A2H1WPZ8   + More
A0A2J7PQV7   A0A2J7PQV9   A0A1B6CYN0   A0A2R7VQX0   E2ANQ4   A0A154PPI0   A0A158P2X0   A0A195CWR9   A0A0J7L5Q2   A0A310SCJ7   E9IQA3   E2B553   A0A088A7E2   A0A195DNC4   A0A195EYZ1   A0A146LX82   A0A0L7QUX6   Q8MSE3   A0A3L8DDT4   A0A026WGC2   E1JI52   A0A1B6C4L0   A0A0P8ZT14   A0A0J9RQL3   A0A0R1DWL5   A0A069DX02   Q86BH1   B4QJW6   D3DMJ9   A0A3B0JRD7   A0A0J9RQL0   E1JI50   E1JI49   A0A0J9UFX3   A0A0P8XSJ0   A0A0J9RRR0   A0A0P9C1Y9   X2JGC3   A0A0Q5U3B7   B3M7W7   A0A1W4UTX2   A0A0R1DW12   A0A0J9RRR5   E1JIE2   A0A1W4UVL5   B2YGF8   X2JCL0   E1JIE3   B4HV09   E1JID9   E1JIE1   A0A1W4UGY8   B4PK15   A0A0R1DW77   E1JIE0   A0A0R1E193   A0A0J9RQ93   Q8MT89   A0A0J9UFW7   A0A0J9RRR9   A0A0Q5UHI2   A0A0P8XSV4   A0A0J9RQ31   M9ND55   A0A1W4UGE6   G1API4   A0A1W4UTW2   A0A1W4UGY0   A0A1W4UVK3   A0A1W4UVL0   B3NFJ4   A0A0R1DXT3   A0A1W4UGF1   G1API3   A0A0Q5U2X4  

PDB

1DY2     E-value=1.33257e-42,     Score=436

KEGG

101737883    K06823 collagen, type XVIII, alpha | (RefSeq) collagen alpha-1(V) chain

GO

GO:0005198   GO:0007155   GO:0005581   GO:0005604   GO:0071711   GO:0014732   GO:2001046   GO:0030246   GO:0014899   GO:0007005   GO:0008045   GO:0031012   GO:0006396   GO:0004713   GO:0043565   GO:0016567   GO:0016020   GO:0005634   GO:0006260  

PANTHER

PTHR24023:SF912  

Length:

430

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00499

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00606

outside

1  -  430

 

 

Pi

23.933956

Theta

15.408257

Tajima's D

-0.868662

CLR

1.234732

CSRT

0.160441977901105

Interpretation

Uncertain