Silkworm Genome Informatics Database

Gene

KWMTBOMO06851

Pre Gene Modal

BGIBMGA012067

Annotation

PREDICTED:_collagen_alpha-1(XVIII)_chain_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr11(+):17574847-17598268 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.704 Nuclear Reliability : 1.764

CDS

ATGCAAACTTCAAGTAAGAGTATTCCTTCTACATCTGTACATGATACACAGGTGGACCAGGAGGAAGACAGCGAGGGTTCAGGGAGATATGGAACGATACCGCCATTTCCGCCTCCACCTCCGGGCTTAGATGGTTACTCTCTCAGACTTCGTGGAGATAAAGGAGAAAGAGGACCGAGGGGACCCCCAGGGGAATCAATCAGGGGTCCGCCAGGTCCTCCTGGGCCGCCCGGGCCCCCCGGTCCTCCAGGGACCGCTACCGAGAGCTCTGGATCTGGTGATGATCAAATTTTCGGGGAAAACTACGCTTCACTTGGACAATGCGGCTGTAATGCTAGCACTATCATGTCTTTGCTACAAACTGCGCCTGAATTAAGGGGGTCACCTGGTCCCCCGGGGATGATCGGGGCAGATGGAAGGGCCGGTCCTCCTGGTATGCCGGGTCAGCCTGGTACTCCTGGTGAGCGTGGGCCCGTAGGACCCCGCGGTGATAAAGGCGATCGTGGAGACGCCGGTACAAGAGGTCACGAAGGACAACCCGGCCCTAAAGGTGAAGCCGGTGTGGACGGACGACCTGGCACTGCTGGCCCTCCGGGGCCTCCTGGACCACCAGGAACACCAGATTACAACAATTTCGAAGAATCTTTAATGGGAGCATATGGAAGTGCTATCGGTAGACCTGGTGCTCCAGGGCCAAAAGGCGATTCGGGGCAACCTGGCCCAATGGGACCGCAGGGAGAAAGAGGATTCCCTGGACAAAAGGGAGAGAGAGGACAGAATGGTGCGGTAGGCGCCAAAGGGGATCGGGGTCATCCGGGACCTCAAGGCGATCGAGGTGTTAAAGGTGATCGTGGAAACCCAGGATTCGACGGAAGACCAGGCATTCCTGGTGCCAACGGACGTCCAGCAGATAAAGGCGAAAAGGGTGAACGTGGGGAGCCAGGACCTCCAGGGTCACCACCAGCTGGAGTTTTTAATGCTGCAGATCCAGAATTTATGGTTGCAGGGTCGCAAGTGACAGGTGCTAAGGGTGACAAGGGAGAAAAGGGTGAAAAAGGAACTCGAGGTAATGATGGCCCACCAGGGTTCCCAGGGAAGGACGGGAAGCAAGGGGAACGAGGTGACATTGGACCTTCAGGTCTACCAGGCATGGCCGGATCCCCTGGACCACAGGGCTTTAAGGGAGACCGAGGAGAAAGAGGCCCTCCAGGACCTATCAGTGTTGCTTCAGCAGGGACCGATATCATAACTATTAAGGGTGATAAAGGAGAACCAGGTGCCCGCGGGCGTAGGGGCCGCAGCGGGCCAGGGGGCGCGCGGGGGGCCACGGGCGCCCCCGGACCGCCCGGGCCCGCCGGCCGCCCCGGGGACAAGGGGGACACTGGACTACCCGGCTGGATGGGCCGTCCGGGAACCCTGGGCCCGCCAGGAGCACCAGGACCAGTTGGACCGAAAGGCGAAAAGGGCGACCCGGGAGTCAACATTTTGGACGTCTCAATGACTATAACAATCTATTTTAATTGTTTTGCTGACTCTAAAGTCCGTAACATACTACCGCAGCGCACCCCAAGGAAGGTGCGCCGCACCATTTGA

Protein

MQTSSKSIPSTSVHDTQVDQEEDSEGSGRYGTIPPFPPPPPGLDGYSLRLRGDKGERGPRGPPGESIRGPPGPPGPPGPPGPPGTATESSGSGDDQIFGENYASLGQCGCNASTIMSLLQTAPELRGSPGPPGMIGADGRAGPPGMPGQPGTPGERGPVGPRGDKGDRGDAGTRGHEGQPGPKGEAGVDGRPGTAGPPGPPGPPGTPDYNNFEESLMGAYGSAIGRPGAPGPKGDSGQPGPMGPQGERGFPGQKGERGQNGAVGAKGDRGHPGPQGDRGVKGDRGNPGFDGRPGIPGANGRPADKGEKGERGEPGPPGSPPAGVFNAADPEFMVAGSQVTGAKGDKGEKGEKGTRGNDGPPGFPGKDGKQGERGDIGPSGLPGMAGSPGPQGFKGDRGERGPPGPISVASAGTDIITIKGDKGEPGARGRRGRSGPGGARGATGAPGPPGPAGRPGDKGDTGLPGWMGRPGTLGPPGAPGPVGPKGEKGDPGVNILDVSMTITIYFNCFADSKVRNILPQRTPRKVRRTI

Uniprot

H9JRA7 A0A3S2NLQ4 A0A212EPX4 A0A194PEG5 A0A2A4JP52 A0A2A4JPJ1 + More

Pubmed

19121390 22118469 26354079

EMBL

BABH01016135 RSAL01000007 RVE54123.1 AGBW02013361 OWR43526.1 KQ459606 + More
KPI91746.1 NWSH01000968 PCG73364.1 PCG73363.1

Proteomes

UP000005204 UP000283053 UP000007151 UP000053268 UP000218220

PRIDE

H9JRA7

Pfam

PF01391 Collagen + More
PF06482 Endostatin

Interpro

IPR008160   Collagen        + More
IPR001791   Laminin_G
IPR013320   ConA-like_dom_sf
IPR010515   Collagenase_NC10/endostatin
IPR016186   C-type_lectin-like/link_sf
IPR016187   CTDL_fold

SUPFAM

SSF49899 SSF49899 + More
SSF56436 SSF56436

Gene 3D

3.10.100.10

ProteinModelPortal

H9JRA7 A0A3S2NLQ4 A0A212EPX4 A0A194PEG5 A0A2A4JP52 A0A2A4JPJ1 + More

PDB

3HR2 E-value=8.25462e-08, Score=137

KEGG

101737883 K06823 collagen, type XVIII, alpha | (RefSeq) collagen alpha-1(V) chain

GO

GO:0007155 GO:0005198 GO:0005581 GO:0005604

Length:

530

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.22179

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00403

outside

1 - 530

Pi

21.629709

Theta

24.60094

Tajima's D

0

CLR

0.987694

CSRT

0.374481275936203

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics