Gene

KWMTBOMO06847

Pre Gene Modal

BGIBMGA012065

Annotation

Collagen_alpha-1(XVIII)_chain_[Papilio_xuthus]

Location

Bomo_Chr11(+):17512017-17521600      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.457

CDS

ATGCCAGAGAAGCTTTACTCCGAATTTTCGATAACAGCAACAGTACGACCAGCTAATAAAGATGGCGGATTCTTGTTCTCCGTTGTCAATCCTCTGGAGACTGTGGTTCAGCTGGGAGTTCAGTTGATACCTTCAGGACCAGGACTGATGAACATATCCCTACTGTATACTGATGCTAACATTTATGCGTTCTCGCAGACAATTGCTTCATTTGTAGTACCGACCTTCGCTAAGAAGTGGAGCAGGTTCGCTTTGAAAGTGTCCTTGGAAAATGTGACACTTTACCTGAACTGCCACGAATTTGACACAGTGGTGGTAAGAAGGAACCCCCTGGAACTGGTCTTCGATTCAGCGTCTACTCTCTACGTAGGACAGGCGGGGCCATTGATAAGGGGCGCTTTTCACTCAGATTTCAGAGTCAGTTAA

Protein

MPEKLYSEFSITATVRPANKDGGFLFSVVNPLETVVQLGVQLIPSGPGLMNISLLYTDANIYAFSQTIASFVVPTFAKKWSRFALKVSLENVTLYLNCHEFDTVVVRRNPLELVFDSASTLYVGQAGPLIRGAFHSDFRVS

Uniprot

H9JRA5   A0A2H1WNF5   A0A194PEP6   A0A0L7L7U4   A0A194R3E6   A0A212EPW2   + More
A0A2A4JP52   A0A2A4JPJ1   A0A3S2NLQ4   A0A2P8YWK0   A0A2J7PQV8   A0A067QXS7   A0A1B6EGQ0   E0VMY3   A0A2R7VRY8   X1X3F3   A0A0B2VRU1   A0A2S2P6V4   A0A1Y1LCC4   A0A2H8TYZ1   A0A1Y1L8J3   A0A2S2PQ73   T1HU11   A0A183V9W3   A0A1Y1L8H1   A0A1Y1LDF5   A0A2S2R8X7   A0A044RG19   A0A0M3ILV4   A0A139WKP9   A0A0N4U8R4   A0A139WKJ8   A0A088A7D8   A0A1D2MX85   A0A310SHA3   A0A0R3RKM7   A0A1I7VIV4   A0A2A3EB50   A0A1S0THE9   A0A0M9A656   A0A226E179   A0A154PR13   E2AY22   A0A026WIV7   A0A336MEV0   A0A3P7EE34   A0A077Z5E0   A0A3L8DGF1   A0A151WYV4   A0A0N4TV55   A0A1I8EVM9   A0A195CWR5   N6TH56   F1KR62   A0A195EYY6   A0A1D2MXI5   E9IQA1   A0A0N5CZC4   A0A0L7QUY1   A0A0J7NFI3   A0A195BPT6   A0A195DNK5   F1KSR0   A0A0K0ISG0   E2B550   A0A0P5IT51   A0A0P5HPH8   A0A0P5WDE8   A0A0P5WD70   A0A0P5LDN9   A0A0P5PRR7   A0A183ECR5   A0A0P5IV35   A0A0N8BPP4   A0A0P5MR79   A0A0N8CQA2   A0A0P4YFJ1   A0A0P5IDR0   A0A0P6IA70   A0A0P5GC21   A0A0P5SA65   A0A0P6GE12   A0A0P6H7Y3   A0A0P4ZJV9   F4X513   A0A0P6BS29   A0A0P5VV60   A0A0N8BHQ8   A0A0P5JS56   A0A0P5BVN9   A0A0P5CMT9   A0A0P5BVN6   A0A0P5ZQQ4   A0A164ZBN0   A0A0P5B1K9   A0A0P5L4E6   A0A0P4Y133   K7J5P1   A0A0N5DM62   A0A0N5B307  

Pubmed

19121390    26354079    26227816    22118469    29403074    24845553    + More
20566863    28004739    18362917    19820115    27289101    25217238    20798317    24508170    30249741    26850696    23537049    21685128    21282665    17885136    21719571    20075255   

EMBL

BABH01016139    ODYU01009886    SOQ54601.1    KQ459606    KPI91747.1    JTDY01002369    + More
KOB71563.1    KQ460779    KPJ12328.1    AGBW02013361    OWR43528.1    NWSH01000968    PCG73364.1    PCG73363.1    RSAL01000007    RVE54123.1    PYGN01000317    PSN48623.1    NEVH01022635    PNF18721.1    KK852851    KDR15064.1    GEDC01000191    JAS37107.1    DS235328    EEB14739.1    KK854034    PTY09918.1    ABLF02040441    JPKZ01000987    KHN84388.1    GGMR01012554    MBY25173.1    GEZM01062175    JAV69980.1    GFXV01007720    MBW19525.1    GEZM01062165    JAV69992.1    GGMR01018377    MBY30996.1    ACPB03024280    UYWY01024533    VDM48854.1    GEZM01062167    JAV69989.1    GEZM01062171    JAV69985.1    GGMS01017283    MBY86486.1    CMVM020000027    KQ971326    KYB28473.1    UYYG01000002    VDN50343.1    KYB28472.1    LJIJ01000425    ODM97649.1    KQ760078    OAD61980.1    KZ288296    PBC28957.1    JH712421    EFO13844.2    KQ435743    KOX76649.1    LNIX01000008    OXA51050.1    KQ435012    KZC13794.1    GL443749    EFN61665.1    KK107231    EZA55034.1    UFQT01001087    SSX28835.1    UYWW01006410    VDM14724.1    HG805933    CDW55044.1    QOIP01000009    RLU18989.1    KQ982649    KYQ52957.1    UZAD01013312    VDN93857.1    KQ977185    KYN05080.1    APGK01027060    APGK01027061    KB740648    ENN79769.1    JI164527    ADY40366.1    KQ981905    KYN33433.1    ODM97651.1    GL764688    EFZ17238.1    UYYF01004366    VDN03114.1    KQ414734    KOC62354.1    LBMM01005667    KMQ91310.1    KQ976432    KYM87507.1    KQ980713    KYN14411.1    JI165256    ADY40914.1    GL445712    EFN89185.1    GDIQ01234082    JAK17643.1    GDIQ01224183    JAK27542.1    GDIP01088541    JAM15174.1    GDIP01088540    JAM15175.1    GDIQ01196441    JAK55284.1    GDIQ01126516    JAL25210.1    UYRT01087296    VDN32399.1    GDIQ01216134    JAK35591.1    GDIQ01157107    JAK94618.1    GDIQ01154657    JAK97068.1    GDIP01109431    JAL94283.1    GDIP01237820    JAI85581.1    GDIQ01216133    JAK35592.1    GDIQ01033200    JAN61537.1    GDIQ01243231    JAK08494.1    GDIQ01094677    JAL57049.1    GDIQ01034505    JAN60232.1    GDIQ01024059    JAN70678.1    GDIP01212317    JAJ11085.1    GL888680    EGI58470.1    GDIP01010920    JAM92795.1    GDIP01109430    JAL94284.1    GDIQ01176595    JAK75130.1    GDIQ01200545    JAK51180.1    GDIP01179270    JAJ44132.1    GDIP01168020    JAJ55382.1    GDIP01179271    JAJ44131.1    GDIP01041345    JAM62370.1    LRGB01000745    KZS16171.1    GDIP01190974    JAJ32428.1    GDIQ01176596    JAK75129.1    GDIP01237819    JAI85582.1   

Proteomes

UP000005204    UP000053268    UP000037510    UP000053240    UP000007151    UP000218220    + More
UP000283053    UP000245037    UP000235965    UP000027135    UP000009046    UP000007819    UP000031036    UP000015103    UP000050794    UP000267007    UP000024404    UP000036681    UP000007266    UP000038040    UP000274756    UP000005203    UP000094527    UP000050640    UP000095285    UP000242457    UP000053105    UP000198287    UP000076502    UP000000311    UP000053097    UP000270924    UP000030665    UP000279307    UP000075809    UP000038020    UP000278627    UP000093561    UP000078542    UP000019118    UP000078541    UP000046394    UP000276776    UP000053825    UP000036403    UP000078540    UP000078492    UP000006672    UP000008237    UP000050760    UP000007755    UP000076858    UP000002358    UP000046395    UP000046392   

PRIDE

H9JRA5   

Pfam

PF01391   Collagen        + More
PF06482   Endostatin
PF00041   fn3
PF00629   MAM

Interpro

IPR001791   Laminin_G        + More
IPR039070   COL15A1       
IPR013320   ConA-like_dom_sf       
IPR008160   Collagen       
IPR016187   CTDL_fold       
IPR010515   Collagenase_NC10/endostatin       
IPR016186   C-type_lectin-like/link_sf       
IPR036116   FN3_sf       
IPR003961   FN3_dom       
IPR013783   Ig-like_fold       
IPR000998   MAM_dom       
IPR037151   AlkB-like_sf       

SUPFAM

SSF49899   SSF49899        + More
SSF56436   SSF56436       
SSF49265   SSF49265       

Gene 3D

3.10.100.10     2.60.40.10     2.60.120.590    

CDD

cd06263  MAM
cd00063  FN3

ProteinModelPortal

H9JRA5   A0A2H1WNF5   A0A194PEP6   A0A0L7L7U4   A0A194R3E6   A0A212EPW2   + More
A0A2A4JP52   A0A2A4JPJ1   A0A3S2NLQ4   A0A2P8YWK0   A0A2J7PQV8   A0A067QXS7   A0A1B6EGQ0   E0VMY3   A0A2R7VRY8   X1X3F3   A0A0B2VRU1   A0A2S2P6V4   A0A1Y1LCC4   A0A2H8TYZ1   A0A1Y1L8J3   A0A2S2PQ73   T1HU11   A0A183V9W3   A0A1Y1L8H1   A0A1Y1LDF5   A0A2S2R8X7   A0A044RG19   A0A0M3ILV4   A0A139WKP9   A0A0N4U8R4   A0A139WKJ8   A0A088A7D8   A0A1D2MX85   A0A310SHA3   A0A0R3RKM7   A0A1I7VIV4   A0A2A3EB50   A0A1S0THE9   A0A0M9A656   A0A226E179   A0A154PR13   E2AY22   A0A026WIV7   A0A336MEV0   A0A3P7EE34   A0A077Z5E0   A0A3L8DGF1   A0A151WYV4   A0A0N4TV55   A0A1I8EVM9   A0A195CWR5   N6TH56   F1KR62   A0A195EYY6   A0A1D2MXI5   E9IQA1   A0A0N5CZC4   A0A0L7QUY1   A0A0J7NFI3   A0A195BPT6   A0A195DNK5   F1KSR0   A0A0K0ISG0   E2B550   A0A0P5IT51   A0A0P5HPH8   A0A0P5WDE8   A0A0P5WD70   A0A0P5LDN9   A0A0P5PRR7   A0A183ECR5   A0A0P5IV35   A0A0N8BPP4   A0A0P5MR79   A0A0N8CQA2   A0A0P4YFJ1   A0A0P5IDR0   A0A0P6IA70   A0A0P5GC21   A0A0P5SA65   A0A0P6GE12   A0A0P6H7Y3   A0A0P4ZJV9   F4X513   A0A0P6BS29   A0A0P5VV60   A0A0N8BHQ8   A0A0P5JS56   A0A0P5BVN9   A0A0P5CMT9   A0A0P5BVN6   A0A0P5ZQQ4   A0A164ZBN0   A0A0P5B1K9   A0A0P5L4E6   A0A0P4Y133   K7J5P1   A0A0N5DM62   A0A0N5B307  

KEGG

NA   

GO

GO:0005604   GO:0007155   GO:0005198   GO:0005581   GO:0005201   GO:0030198   GO:0031012   GO:0005615   GO:0016021   GO:0016020  

PANTHER

PTHR24023:SF912  

Length:

141

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.53787000000001

Exp number, first 60 AAs:

2.17091

Total prob of N-in:

0.07811

outside

1  -  141

 

 

Pi

23.591996

Theta

24.31611

Tajima's D

-1.140189

CLR

0.578414

CSRT

0.112944352782361

Interpretation

Uncertain