SGID The Silkworm Genome Information Database
Gene
KWMTBOMO06845
Pre Gene Modal
BGIBMGA012062
Annotation
PREDICTED:_collagen_alpha-1(XVIII)_chain-like_[Amyelois_transitella]
Location
Bomo_Chr11(+):17186592-17239326      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.972
 

Sequence

CDS
ATGTTTACCAGCGTATGCGCCAAAAATGTGTATTGCAAAGAGGAACTTGAACACACGGATTTAAGTGTTATCTGTATTGACAATGACGTGAGTGTCATATCCAAGATGGCGATGGTTATTTCCCAGACGACAAAAGCGGCAATTGGCGGGTTTTTAGCTTTAATGATCCTTGGTGCTGTGCTAGTTGTCGGAGCCGCTTTCGGGTGGTTCGACCCGAAAAGAGAAGATGAGGATACGCCTGCAAAGATCAGCGCTAGATTGCAGGGGAGGACCTCGTTCGTCACGCATAGAGCGGTGAACCCAGACGAGAATCATCTACCGGTTGTCTCGCACTCGTCGCCGTTTTACGTTGGAGATAAAAGTGGAAGCACAGATGCAACCGCAGTACAAGGAACGTGCCGATGCAGTCTAAATGACATCTCTCAAATCTTGGAAGTCATGCCAGAGTTAAGAGGACCTCCTGGACCACAAGGACCAACCGGGGCTGACGGCACTACGGGCGCTCCAGGGAAAACGGGACAAATCGGAGACCCCGGACCTGCAGGGCCTCCTGGATCTAAAGGCGATCGAGGGGAAAGAGGGGATACAGGGAATTCAGGTCCAGAAGGTCAACCTGGTCCCAAAGGCGACCCTGGCGCAGATGGTTCTCCTGGGCCACAGGGCCCTCAAGGCCCACCCGGGCTACCAGGCCCTGTGACATCTGCACTAATAGAATCAACAGGATTATATGGGTCTGTTAATCCTGGTATCCAAGGACCTCAAGGCGAGAGGGGTCCAATGGGCCTTCCAGGGCCTCAAGGGGAGAGAGGCTACCCTGGGAATAAGGGCGAGAGGGGATTACTTGGCCCTAAAGGAGACAAAGGCGACCGGGGGTACGTGGGTCTTAGAGGTCCACACGGTGCCAAAGGCGAAAAAGGCCCTCCAGGCCGAGACGGGGTCCCAGGCCTGCCGGGAGCGCACGGCCGTCCCTCAGAAAAGGGTGAAAAAGGTGCTAGAGGTCTTCCTGGTCTGCCTGGACCTCCAATGCCGACAATATCTGACAATGCTGTGCTGAGTGACATCACACGAACAGAGGCTTCGCTCTTGAAGGGTCCGAAGGGAGACCGCGGGGAGACTGGTGAAAAGGGTGAGAAAGGAAATAGGGGCCTCGAGGGACCACAAGGATTCCCAGGCGTTGATGGAAAGCCTGGTGAACGGGGTGACATAGGGCCGTCTGGCTTACCAGGAACACAGGGCTCGACTGGTCTTCCAGGGTCTAAAGGTGAACGCGGCGAACCTGGCCCGCCTGGACCAGTGGCTATATCTCGAGACGATGCTATGGTTATGACCAAGGGCGATAAAGGTGATGCAGGGCCTCGCGGTAAAAGAGGCCATCCAGGGCCACCTGGACCGAGAGGTCCTCCAGGACTACCAGGACCTCCAGGTACTCCAGGTGTGAATGGGCCCACTGGAGACATTGGACTTCCTGGATGGGCGGGCCCGCCCGGAGCCACGGGTCAGCCCGGTCCCCCAGGCCCGAAAGGTGAAAAAGGGGACTCCGCCGTTAACCCACTTGACTTGGAAAAGATAAAAGGTGACAAAGGTGATAGAGGATTCGATGGTAATCCTGGTGCGCCGGGCAAGGATGGGCCGCGTGGGCCTCCAGGGCCTCCTGGGACTCCAGCATCGAACGTCCAATACGTCCCAGTACCTGGACCTCCAGGCCCCCCTGGTCCACCTGGAACTTCACTAGGGCTACCAAAAGATTCAGTCGATACACTCACAGATAGTCCTGGAGTTAGAAGGGAGCCCAATACAGGCAAACAGCGGGATCCTCTACAAATTCTACGAAGCCTGAACCATCTGGTGCAGTACCGACAAGAGCCGCACGGTTTTCGAGATTCATTAGATCCACTTGGTGAAGGCTCAGATTTAGATGACGAAGAGGACGGAAGGGCTATTGTTGGAACCATCCTATTTAAAACTACTGATTCGTTGAGACGTCTAGGAGTAAATAGTCCTCGAGGAACTTTGGCCTACGTGTTACAAGAACAAGCTTTGCTGATTCGTGTCAACAACGGCTGGCAATACGTAGCGATGGGGTCATTACTCGCTTTGCACGCTCCGCCCACGAACGGCCCTACCAGGTCGCCATTGCAGAACATTCTGGAAACGTCCAGTTTGGTTCACCACAAGAATCCAGCTGTCGACGGACCAGTCTTACGTCTGGCTGCATTAAACGAGCCTCGCACGGGCGACATGCACGGCGTTAGCAGCACAAATTACGAATGCAAAAGACAAGCTCAGAGAGCTAACATGGACGGAACATTCCGAGCGTTTATATCGTCGAGGGTTCAAGCAATAGATTCCATCGTCAGCTGGGTAGACAGAGAGATTCCAGTCGTGAACACAAGAGGGGATGTTCTCTTTAATTCTTGGGGTGAAATGTTCGATGGTTCAGGAGCATTGTTCGCTCATGCCCCCAGGATATACAGCTTTAGTGGTCAGAATGTTCTAATGGACCCTGGTTGGCCTACAAAAGCCGTCTGGCACGGCGCTAGTTCCACCGGCGAGCCAGCCATGGATGCGTACTGTGACGCATGGCATAGCAGCAGCCCAGATAAATTTGGTCTCGCATCTTCACTGCACACGAATAAACTGCTGGATCAAGAGACATATTCGTGCAGCAGTAGGTTGATAGTATTATGCGTGGAAGCAACTCCGGCTGATACGGTTCGAAGAAAAAAACGATCCAGGTATCGAACAAACGAAAAGCTCAAGTTCTTGAAAGATTCAGAAAAATCGAATGAAACTAGTCAAAGCTTATAG
Protein
MFTSVCAKNVYCKEELEHTDLSVICIDNDVSVISKMAMVISQTTKAAIGGFLALMILGAVLVVGAAFGWFDPKREDEDTPAKISARLQGRTSFVTHRAVNPDENHLPVVSHSSPFYVGDKSGSTDATAVQGTCRCSLNDISQILEVMPELRGPPGPQGPTGADGTTGAPGKTGQIGDPGPAGPPGSKGDRGERGDTGNSGPEGQPGPKGDPGADGSPGPQGPQGPPGLPGPVTSALIESTGLYGSVNPGIQGPQGERGPMGLPGPQGERGYPGNKGERGLLGPKGDKGDRGYVGLRGPHGAKGEKGPPGRDGVPGLPGAHGRPSEKGEKGARGLPGLPGPPMPTISDNAVLSDITRTEASLLKGPKGDRGETGEKGEKGNRGLEGPQGFPGVDGKPGERGDIGPSGLPGTQGSTGLPGSKGERGEPGPPGPVAISRDDAMVMTKGDKGDAGPRGKRGHPGPPGPRGPPGLPGPPGTPGVNGPTGDIGLPGWAGPPGATGQPGPPGPKGEKGDSAVNPLDLEKIKGDKGDRGFDGNPGAPGKDGPRGPPGPPGTPASNVQYVPVPGPPGPPGPPGTSLGLPKDSVDTLTDSPGVRREPNTGKQRDPLQILRSLNHLVQYRQEPHGFRDSLDPLGEGSDLDDEEDGRAIVGTILFKTTDSLRRLGVNSPRGTLAYVLQEQALLIRVNNGWQYVAMGSLLALHAPPTNGPTRSPLQNILETSSLVHHKNPAVDGPVLRLAALNEPRTGDMHGVSSTNYECKRQAQRANMDGTFRAFISSRVQAIDSIVSWVDREIPVVNTRGDVLFNSWGEMFDGSGALFAHAPRIYSFSGQNVLMDPGWPTKAVWHGASSTGEPAMDAYCDAWHSSSPDKFGLASSLHTNKLLDQETYSCSSRLIVLCVEATPADTVRRKKRSRYRTNEKLKFLKDSEKSNETSQSL

Summary

Uniprot
A0A2W1BJU1   A0A2A4K1X0   A0A212ER39   A0A3S2NMU4   H9JRA2   A0A194R482   + More
A0A194PFF0  
Pubmed
28756777    22118469    19121390    26354079   
EMBL
KZ150041    PZC74561.1    NWSH01000251    PCG78016.1    AGBW02013138    OWR43945.1    + More
RSAL01000233    RVE43810.1    BABH01016159    KQ460779    KPJ12329.1    KQ459606    KPI91748.1   
Proteomes
UP000218220    UP000007151    UP000283053    UP000005204    UP000053240    UP000053268    + More
PRIDE
H9JRA2   
Pfam
PF01391   Collagen        + More
PF06482   Endostatin
Interpro
IPR016187   CTDL_fold        + More
IPR008160   Collagen       
IPR016186   C-type_lectin-like/link_sf       
IPR010515   Collagenase_NC10/endostatin       
SUPFAM
SSF56436   SSF56436       
Gene 3D
3.10.100.10    
ProteinModelPortal
A0A2W1BJU1   A0A2A4K1X0   A0A212ER39   A0A3S2NMU4   H9JRA2   A0A194R482   + More
A0A194PFF0  
PDB
1DY2     E-value=2.52683e-40,     Score=419

Ontologies

KEGG
101739616    K06823 collagen, type XVIII, alpha | (RefSeq) collagen alpha-1(XVII) chain-like
GO
GO:0005604   GO:0016021   GO:0005581   GO:0007155   GO:0005198   GO:0031012   GO:0006396   GO:0004713   GO:0043565   GO:0016567   GO:0016020   GO:0005634   GO:0006260  

Topology

Length:
935
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.73448
Exp number, first 60 AAs:
13.84784
Total prob of N-in:
0.99980
POSSIBLE N-term signal
sequence
inside
1  -  47
TMhelix
48  -  70
outside
71  -  935
 
 

Population Genetic Test Statistics

Pi
27.870939
Theta
25.938975
Tajima's D
0.115028
CLR
1.107716
CSRT
0.403529823508825
Interpretation
Uncertain
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