Gene

KWMTBOMO06844

Annotation

PREDICTED:_uncharacterized_protein_LOC106129555_[Amyelois_transitella]

Location

Bomo_Chr11(+):17053032-17054452      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.487

CDS

ATGAAGTGCGCCGGTTGTCTAAAGGTAACGAAAGAATTAGGTTCTATTCGTTGTACCAGCTCATCTTGTACGAAAATTTTCTGTCCTCTCTGTATAGACATCTCTCTGGTTCCTGTAGATCGAAAAAAGATTTGGAAGTGTCCTGATTGTTGTGCTGCACACAAAAAAGGAGGTGATAACAGTCTTACTCCTATAAGAGGTACATATGACGGCCAAAATATAACGACTCGTAAGAAGGAGCCCACTGCAGAGAACAGTAAAGATGACATAAAAAGACTGACAGAGGAACTTTGTAAAATAAGTATGAGACTAGAAGAGGTAACTCAATCCTTAAATTACTCTCATCACCGTATGGAAGAACTTATGGCCAAAATTGAGGCCAACGATACCCGTATGAAGTACCTAGAGAAACGGGATCTTGAGTTCACGAATCTTAAATCGGCGGTATCTCAAATACAAAGTGATATAAACATACAGGCTCAAAATATACTGTTAAATGAAATTGAGTTGATTGGAATCCCGGAGTCTCCAGCAGAGAATTTGCAACATACTTTTCAGCTTGCAACTAAGAAGCTGGGTGTCGAACTGGATGAGAAAGATGTAGACTGGATCACTAGGGTGGGGCCTCGCCGTTCTGCAGTTCCTCCTAGCTTAACTGAACTTCAAAATAGGATGCCGCGACCAATTGTTGTTCGTTTGCTGCGTAGATCTAAGCGTGACGAAATACTAAAAGCATCTAAATCACGTAGGAATATAAAAAGTAATGACTTGGATGCCCCTGGAACACCACAAAATATATATTTCAATGAGAGGCTTACTAAAGAAAATAGAATCTTATTTCGAGATGCTAGAAATAGAGCGAAGAAAGAAGGGTACGCTTATTGTTGGTGTAACCGTGGCGCTATATATGTCAGGCGGCGTGAGGGGAATGCAGCAGTGCAACTGCGAAGCCAAAGTTATCTGGATCGGTTATTTGCTAACACGAAAACTACTGTCGGATGTAACAATATCGAGGTATAA

Protein

MKCAGCLKVTKELGSIRCTSSSCTKIFCPLCIDISLVPVDRKKIWKCPDCCAAHKKGGDNSLTPIRGTYDGQNITTRKKEPTAENSKDDIKRLTEELCKISMRLEEVTQSLNYSHHRMEELMAKIEANDTRMKYLEKRDLEFTNLKSAVSQIQSDINIQAQNILLNEIELIGIPESPAENLQHTFQLATKKLGVELDEKDVDWITRVGPRRSAVPPSLTELQNRMPRPIVVRLLRRSKRDEILKASKSRRNIKSNDLDAPGTPQNIYFNERLTKENRILFRDARNRAKKEGYAYCWCNRGAIYVRRREGNAAVQLRSQSYLDRLFANTKTTVGCNNIEV

Uniprot

A0A0L7L8I5   A0A0L7LA76   A0A0L7KMA8   A0A0L7KR27   A0A2W1BEV5   A0A2H1WRH7   + More
A0A2A4J6A9   A0A0L7KSF2   A0A2A4J0K9   A0A2A4IZ17   A0A2A4K4X7   A0A2A4J6Z0   A0A2H1WIH0   A0A0L7L550   A0A2W1BHR3   A0A2A4JD92   H9JC60   A0A2H1WVR8   A0A0L7LCM2   A0A2W1C270   A0A2H1WQP2   A0A2A4JDI4   H9JHN2   A0A2A4ITG1   A0A194QNP5   A0A0N0PFG8   A0A0L7KT58   A0A0L7LMB4   A0A0L7LUR8   A0A2A4KAI6   A0A0L7KW99   A0A0L7K2I9   A0A0L7LLW9   A0A2A4J8T1   A0A0L7LT54   A0A0L7LKW3   A0A0L7KNH2   A0A0L7K2H2   A0A3S2TB59   A0A0L7L3H2   A0A0L7LLF8   A0A0L7L9T9   A0A0L7KL91   A0A212F6C5   A0A2A4IUU8   A0A2H1WBH0   A0A2H1X1G7   A0A1Y1JXQ1   A0A1S3DGR2   A0A0L7LJG0   A0A1B6LMZ9   A0A194QEB0   A0A293LWL5   A0A1B6ITU2   A0A2A4JC78   T1HCI2   A0A0L7LF48   T1HA40   A0A0L7K2E3   A0A1S3DD01   A0A0L7L7A2   A0A0L7K4K4   T1HBR1   A0A0L7L864   T1HAF0   A0A0L7K2S8   A0A0A9YWE3   T1HBQ9   A0A0A9YA31   A0A0L7KQ92   A0A194RCQ2   A0A0L7KJT4   A0A2A4IU35   A0A0K8ST40  

Pubmed

26227816    28756777    19121390    26354079    22118469    28004739    + More
25401762   

EMBL

JTDY01002233    KOB71838.1    JTDY01002025    KOB72300.1    JTDY01009015    KOB64201.1    + More
JTDY01007036    KOB65506.1    KZ150150    PZC72841.1    ODYU01010507    SOQ55661.1    NWSH01002730    PCG67615.1    JTDY01006445    KOB66006.1    NWSH01003975    PCG65605.1    NWSH01005158    PCG64392.1    NWSH01000125    PCG79301.1    NWSH01002711    PCG67639.1    ODYU01008890    SOQ52873.1    JTDY01002966    KOB70404.1    KZ150197    PZC72320.1    NWSH01001982    PCG69514.1    BABH01014938    ODYU01011375    SOQ57082.1    JTDY01001653    KOB73242.1    KZ149908    PZC78213.1    ODYU01010286    SOQ55282.1    NWSH01001817    PCG70031.1    BABH01012931    BABH01012932    NWSH01008646    PCG62462.1    KQ461191    KPJ07137.1    LADJ01030744    KPJ21224.1    JTDY01006205    KOB66199.1    JTDY01000562    KOB76673.1    JTDY01000042    KOB79218.1    NWSH01000010    PCG80924.1    JTDY01005149    KOB67319.1    JTDY01017010    KOB51869.1    JTDY01000624    KOB76430.1    NWSH01002492    PCG68176.1    JTDY01000181    KOB78416.1    JTDY01000729    KOB76082.1    JTDY01007941    KOB64843.1    JTDY01017442    KOB51849.1    RSAL01001410    RVE40802.1    JTDY01003157    KOB70048.1    JTDY01000739    KOB76046.1    JTDY01002139    KOB72021.1    JTDY01009085    KOB64118.1    AGBW02010051    OWR49283.1    NWSH01007173    PCG63054.1    ODYU01007238    SOQ49844.1    ODYU01012716    SOQ59161.1    GEZM01097808    JAV54094.1    JTDY01000945    KOB75331.1    GEBQ01014872    JAT25105.1    KQ459054    KPJ03878.1    GFWV01006510    MAA31240.1    GECU01017357    JAS90349.1    NWSH01002032    PCG69366.1    ACPB03011237    JTDY01001455    KOB73826.1    ACPB03024613    ACPB03027065    JTDY01015045    KOB51976.1    JTDY01006475    JTDY01002579    KOB65982.1    KOB71161.1    JTDY01010989    KOB57787.1    ACPB03014947    JTDY01002313    KOB71687.1    ACPB03021827    JTDY01014864    KOB51988.1    GBHO01009719    GBRD01009686    JAG33885.1    JAG56138.1    ACPB03014935    GBHO01013672    JAG29932.1    JTDY01007401    KOB65231.1    KQ460397    KPJ15249.1    JTDY01009571    KOB63316.1    NWSH01007563    PCG62908.1    GBRD01009465    JAG56359.1   

Proteomes

UP000037510    UP000218220    UP000005204    UP000053240    UP000283053    UP000007151    + More
UP000079169    UP000053268    UP000015103   

PRIDE

H9JC60    H9JHN2   

Pfam

PF03258   Baculo_FP        + More
PF00628   PHD
PF00076   RRM_1

Interpro

IPR011011   Znf_FYVE_PHD        + More
IPR004244   Transposase_22       
IPR004941   Baculo_FP       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR019786   Zinc_finger_PHD-type_CS       
IPR002219   PE/DAG-bd       
IPR001841   Znf_RING       
IPR027267   AH/BAR_dom_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR034209   PUF60_RRM1       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR018527   Rubredoxin_Fe_BS       

SUPFAM

SSF57903   SSF57903        + More
SSF103657   SSF103657       
SSF56219   SSF56219       
SSF54928   SSF54928       
SSF57667   SSF57667       

Gene 3D

3.30.40.10     3.30.70.330     3.60.10.10    

CDD

cd12370  RRM1_PUF60

ProteinModelPortal

A0A0L7L8I5   A0A0L7LA76   A0A0L7KMA8   A0A0L7KR27   A0A2W1BEV5   A0A2H1WRH7   + More
A0A2A4J6A9   A0A0L7KSF2   A0A2A4J0K9   A0A2A4IZ17   A0A2A4K4X7   A0A2A4J6Z0   A0A2H1WIH0   A0A0L7L550   A0A2W1BHR3   A0A2A4JD92   H9JC60   A0A2H1WVR8   A0A0L7LCM2   A0A2W1C270   A0A2H1WQP2   A0A2A4JDI4   H9JHN2   A0A2A4ITG1   A0A194QNP5   A0A0N0PFG8   A0A0L7KT58   A0A0L7LMB4   A0A0L7LUR8   A0A2A4KAI6   A0A0L7KW99   A0A0L7K2I9   A0A0L7LLW9   A0A2A4J8T1   A0A0L7LT54   A0A0L7LKW3   A0A0L7KNH2   A0A0L7K2H2   A0A3S2TB59   A0A0L7L3H2   A0A0L7LLF8   A0A0L7L9T9   A0A0L7KL91   A0A212F6C5   A0A2A4IUU8   A0A2H1WBH0   A0A2H1X1G7   A0A1Y1JXQ1   A0A1S3DGR2   A0A0L7LJG0   A0A1B6LMZ9   A0A194QEB0   A0A293LWL5   A0A1B6ITU2   A0A2A4JC78   T1HCI2   A0A0L7LF48   T1HA40   A0A0L7K2E3   A0A1S3DD01   A0A0L7L7A2   A0A0L7K4K4   T1HBR1   A0A0L7L864   T1HAF0   A0A0L7K2S8   A0A0A9YWE3   T1HBQ9   A0A0A9YA31   A0A0L7KQ92   A0A194RCQ2   A0A0L7KJT4   A0A2A4IU35   A0A0K8ST40  

KEGG

NA   

GO

GO:0035556   GO:0046872   GO:0003723   GO:0016301   GO:0008168  

PANTHER

PTHR11505  

Length:

339

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02321

Exp number, first 60 AAs:

0.02321

Total prob of N-in:

0.03995

outside

1  -  339

 

 

Pi

13.649484

Theta

11.775169

Tajima's D

-0.685126

CLR

17.706871

CSRT

0.19894005299735

Interpretation

Uncertain