Gene
KWMTBOMO06842
Pre Gene Modal
BGIBMGA012090
Annotation
PREDICTED:_collagen_alpha-1(XVIII)_chain-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane Reliability : 2.344
Sequence
CDS
ATGGGAATTTTTTCAAGGTGTTGTAAAGTTCGCGTTGGAGTTATCAAAATTGTCTTTAGCAGGTACACTTTATTTTCTATACTACTCTTCCAAAGAGCAATTTCCAGTTACTTGTCTGGTGGTTACAACTTACTGAGACTGGACCAATTACCTTCCGACATACCGACAACCGTAGCACCCGACGGCTTTCCGGCTCCAAATTTCGCAAATCAATCCGTCACAATACCAATAAGCGACATCATCGAAATCGGGGATTATCTACCAACACCGTTTATTATCAACGCAGTGATCAAATTGGACGAACTAACAGCGACATGCTTATTCCAGTTTAAGAATAACGTTGCTGACACGTACTTCAGTTTGTGTATGGAGCCCGCCAGCGAGTCTCTAGTGAGATTTATCTTCAACGGCCTCGATACGAGCCCTATAGAAACCGTAGTGAAAGTAGACAAAGATTCATGGACAAAATACACTTTTGAAATCGATCGCACCTCGTTGACCACTCGTTTGGACTGTATACTCTTATTTAAGCAGAGCACCGAGAGACCTACTATGGATGTTTTATTCGAACCGGATTCGACGTTGGTTTTGGGAGAGTCGCCTTACAGTGAAAAGAATTTTATGGGATCCATAAAGGAAATAAAAATATATCCGGACTCAAACGAAGAAACCATAAAAAATATTTGCAACGAGTTTAATGAAGAAAACGAAGAGTCAACGGACAATGTAGAAGAACCTCAATATATTAAAAACCGTAAGTTATCACAGATAATCGTCTACAATCTAAGCTCTGTTTGCTAA
Protein
MGIFSRCCKVRVGVIKIVFSRYTLFSILLFQRAISSYLSGGYNLLRLDQLPSDIPTTVAPDGFPAPNFANQSVTIPISDIIEIGDYLPTPFIINAVIKLDELTATCLFQFKNNVADTYFSLCMEPASESLVRFIFNGLDTSPIETVVKVDKDSWTKYTFEIDRTSLTTRLDCILLFKQSTERPTMDVLFEPDSTLVLGESPYSEKNFMGSIKEIKIYPDSNEETIKNICNEFNEENEESTDNVEEPQYIKNRKLSQIIVYNLSSVC
Summary
Uniprot
ProteinModelPortal
Ontologies
GO
Topology
Length:
266
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
16.76547
Exp number, first 60 AAs:
16.68782
Total prob of N-in:
0.77722
POSSIBLE N-term signal
sequence
inside
1 - 11
TMhelix
12 - 34
outside
35 - 266
Population Genetic Test Statistics
Pi
18.665172
Theta
18.941439
Tajima's D
0.008909
CLR
0.534751
CSRT
0.375231238438078
Interpretation
Uncertain
