Silkworm Genome Informatics Database

Gene

KWMTBOMO06841 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012091

Annotation

PREDICTED:_collagen_alpha-1(XVIII)_chain-like_[Bombyx_mori]

Location

Bomo_Chr11(-):16876839-16893420 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.964

CDS

ATGCCTGAAATGAGAGGACCTCCCGGTGAAGCTGGTCCCAGGGGCGAGCCTGGACTTCCTGGTCTTCATGGGGAGAAAGGCCCTGAAGGTCCTGCGGGGAAACCTGGCCTAGACGGTAGAGTAGGGGAGCCAGGTCACGATGGTGTACCTGGACGAAACGGAAAGCCTGGGGAGCCAGGACCACCAGGAAAAGACGGAGCACCCGGTCGTGATGGAGAACCTGGACTAAGAGGCCCACCTGGCCCACCCGGTCCTGGTTTCATGGAAACAGAGGAAGAAAAGAAGGCTCGACAGATTCGGATACCTGGGCCTAAAGGTGAGCAAGGCTCACCTGGCTTACCAGGGTATCCCGGGCCAAAAGGTGAAACCGGATCAAAAGGTGACAAAGGAGAAATTGGACAACAAGGTGCAAAAGGAGAAGAAGGTATCATGGGTCAAATGGGTGAGAAAGGAAAAAAGGGTGATAAAGGTGACGCAGGAGTAGATGGTAGACCTGGTATGCATGGAAACCACGGAGTAGACGGGAGAACAGGTGATAAAGGTGATAAAGGAGCACCAGGGCTGGCGGGACTTCCAGCAAGCTTGGCTTCAATTTTGGACGAAGAAATGGACGAATTGACAAAAGCGGCAATCATTGAGAAATTCAGAGGGTTCAAAGGGGAACACGGCGACAAGGGTGATAAGGGCAGCAAAGGTGATCAAGGGAATACTGGTCTAGCAGGGGAACCCGGTAAAGATGGTAGAACTGGAAGCACGGGGCCTCGAGGACCTACAGGTCCCCGAGGAAAACAAGGTCCTATGGGCCCTAGAGGATACAAAGGCGCAAGAGGTGCACCAGGACCAGTTGGAAAAGTACCAGCTTCAGAAATAGCTTTACTAAAGGGTGCTACAGGACCTCCAGGACCAAAAGGAAGTACTGGAGAAAAAGGTCAAAAAGGCGATAAAGCCCCGGAAATAGACGTATCAAAGCTGAAAGGTGAAAAGGGGGATCGAGGGCTAGAAGGTAGTCCCGGTAAGCCTGGCCCCATAGGACCAGTTGGCCCTCCAGGAATTTGTGAGAAGTCGAGTCCTCAACCACCCATCCCTGGACCTCCTGGACCCCCAGGGCCTCCAGGATCACCTGGGAGAGACGGTGAAGCGGGTCAACCAGGAGCGTCCATAATCGGTCCGAAAGGTGAACCAGGATTTACGATGACATCGAATAATATTGATGAAACAGTTGATTTCGATAGCAACGACGATGAAGCCTTCTTTAAATCATACACGATTATTTTCAAGACCTACAAGGGTCTGTTGAAGAGAACATCGAAAACGCCTGTAGGAACTCTCGCTTACGTTCTGGATGAACAAATTTTGTTGTTGAGAGTGGAATATGGATGGCAGAATGTTAATATTGGATCGATGTACCAACCTTCGAGAAGCGCACCTAGACTTGTACCATACAATCAACCGTCAAAGTCACCTAACGACAAAAGATATATACGCTTGGCAGCCCTGAACGAACCTTACTCTGGTAGAATGGAGACCCACTTAAATAGGGTTGGCTACAGCGCGATCAACTACGAGTGCCACAGACAGTCCATGCGCGACTATAACGGAACATTCGTTGCTGTGCTCTCAAACAGGGTAACAGACCTAATTTCATTAGTAAAACCGTCAGAACGTAACATTCCTGTTACAAATTTAAAGGGGGAAATTCTTTACCCTTCGTGGAGTAGCATATTTGATGGAGCCAGATCAATGCACGGGCAATCTAAGGCTAATATCTACAGTTTCGACAACAGAAACGTCTATGTGGATCAACAATGGCCTAAGAAAATGGTGTGGATAGGTGCTGATACTCTAGGCAATCGATCAACAAAAGCATACTGTGACGAGTGGAGCTCAGATAGCCAACAAATGTTTGGCACCGCATCTCCTCTAGACAAACTTTTAGAACAAAGACTATTGAGCTGTGATAATAAACTTATAGTCCTTTGCGTCGAGTTATCGTCGCAAGCATCGAGACACAATCATAAGAAGCGCTGGCCCAAGAAACGTGTTACGTACGATAAACGAATCCGAAAACCGTTTGCTGGTACATAG

Protein

MPEMRGPPGEAGPRGEPGLPGLHGEKGPEGPAGKPGLDGRVGEPGHDGVPGRNGKPGEPGPPGKDGAPGRDGEPGLRGPPGPPGPGFMETEEEKKARQIRIPGPKGEQGSPGLPGYPGPKGETGSKGDKGEIGQQGAKGEEGIMGQMGEKGKKGDKGDAGVDGRPGMHGNHGVDGRTGDKGDKGAPGLAGLPASLASILDEEMDELTKAAIIEKFRGFKGEHGDKGDKGSKGDQGNTGLAGEPGKDGRTGSTGPRGPTGPRGKQGPMGPRGYKGARGAPGPVGKVPASEIALLKGATGPPGPKGSTGEKGQKGDKAPEIDVSKLKGEKGDRGLEGSPGKPGPIGPVGPPGICEKSSPQPPIPGPPGPPGPPGSPGRDGEAGQPGASIIGPKGEPGFTMTSNNIDETVDFDSNDDEAFFKSYTIIFKTYKGLLKRTSKTPVGTLAYVLDEQILLLRVEYGWQNVNIGSMYQPSRSAPRLVPYNQPSKSPNDKRYIRLAALNEPYSGRMETHLNRVGYSAINYECHRQSMRDYNGTFVAVLSNRVTDLISLVKPSERNIPVTNLKGEILYPSWSSIFDGARSMHGQSKANIYSFDNRNVYVDQQWPKKMVWIGADTLGNRSTKAYCDEWSSDSQQMFGTASPLDKLLEQRLLSCDNKLIVLCVELSSQASRHNHKKRWPKKRVTYDKRIRKPFAGT

Uniprot

A0A1D2MCM4

Pubmed

27289101

EMBL

LJIJ01001818 ODM90730.1

Proteomes

UP000094527

Pfam

PF06482 Endostatin + More
PF01391 Collagen

Interpro

IPR016187   CTDL_fold        + More
IPR008160   Collagen
IPR010515   Collagenase_NC10/endostatin
IPR016186   C-type_lectin-like/link_sf

SUPFAM

SSF56436 SSF56436

Gene 3D

3.10.100.10

ProteinModelPortal

A0A1D2MCM4

PDB

1DY1 E-value=1.83626e-29, Score=325

KEGG

101738279 K06823 collagen, type XVIII, alpha | (RefSeq) collagen alpha-1(XVIII) chain-like

GO

GO:0005581 GO:0005604 GO:0005198 GO:0007155 GO:0031012 GO:0006396 GO:0004713 GO:0043565 GO:0016567 GO:0016020 GO:0005634 GO:0006260

Length:

694

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00004

outside

1 - 694

Pi

29.879212

Theta

30.45758

Tajima's D

0.156076

CLR

1.116466

CSRT

0.414179291035448

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics