SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06840
Pre Gene Modal
BGIBMGA012060
Annotation
PREDICTED:_uncharacterized_protein_LOC101738416_[Bombyx_mori]
Location
Bomo_Chr11(+):16758221-16833812      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.041
 

Sequence

CDS
ATGAAGTATGCAGAGACTTGGCTCTACGGGTCCGTCAGGACCCAGACGCCCCCTGTTCGACCTAGCGTCTTTACGGCCTATCCAGAAGTCGCTGGTCCTGTTCTTATTAGCACCCCACAAAAACCAACACCACACAACTACGCTGTCATTCTATGTTCCTGTCCTGAGTACCTGAACGGTACAAAGAAAACCAGTTCAACCAAAGTCAGTATATGTAAGAAATGCAAGGGATCTCGTTTGCCATTAACAATAGCTGAAAGTCCGAGGCTACTTGTGGGTGGAACAGTCAGAGGACCACAAGTTAGTCGTGATACGAGCTTGCTTAGGTCAGGAACAGTTCGAGTACAAGGCTCTAAATCAAGACCTACAATACTTAAGTCAAATGGAGAAGCAGATCCTTATGATTTAATGCGACGCAGTAGACTAGCACCTCCCCACGAAGCTCGTATTGGAAGTCAATTCTCAACGACAAGATCTAGAGCAAAAAGCATAAGCCCTTGCAGGATTAAAAGTAAAAAACCAATTCCAGAAACTCTTAGCAAGAGTAGAAGCAAATCCACGAGTCGGGTAAACGAAATCTGGATTGAAGAAGATTCTAATACTATTGAGTCCAAGAAGTCAATATTGTCTTGCGATATCAACCCGTATGATTTGGTTAAGGCGAGTGGAGGCTCAAAATCTCTGGCAGAAATTGAATTTGATGATGATTATTCGGATGTTTTTGCAGATTCATTAAAAAATAACAAAGGTACTCTTACTAAATCTAAACAAGACTCTTGTGTCAAAGCCATCAGTGGACAAAGGGTTAGAATATCCGATGAGTCTAAAAATTGCATAGTCGAAGAAATAGGGGTATACGATACGGTTAATTATGATCTCAAAAATTCAGAACTGAAAACGAAAGAAATCCCTTCGGCGTTGTCGTTACGTAACAATAAATCTGAAAATAAAAAATTATCATTTAGTAAAAGTACAAGTAAGAAAATTCTTTCTATACCCACATCGAACCGAACAAAACAAAAAAGTGTTTCTCCAAAAAGACCTCCCAGAAGGATCAGAAATGTGAATAAGACAGACGATGACAGCGAAAGTGACAATCCACGCTTATTAGAGAACAACAATAGAATCCCCAAAAATAAGAATTCAAATAACGACACAATTAAATCGATTTTAAAGAAGCCAAGAAATTATGAATTAGATGAATCATTAACCAAAATCGATACATTTGATGACACACCGGAACATAAACGTGCAAATACCACCCTTTTCTACTTACCAATACCAAAAGATAAAGGAACGATCTCAAAACCTAGTACTATTTTGCAAAGGAAACGTGTTCAATTTTTGGTAGAGAATGATGAGACAAAAGTCATTTATACAGCTGAGCTGAATCTTGAGCAAGATATTATCAGGGAGAGTCCTGAGCAGTCACAAACGAATACAGAAACTGAAGATGATGTAACAGAAGAAGGCGATATAGTGAGTCAGAGCTTGACTCCTGAAGTAATTAGTCATACTTTGACTCCTGCAATAGAGAGTCAGAGTTTTACCGCCGAAGATACCGGCGAAGCTTTAAACTCAGTTGAAATAGCAGAACTGGATAAAATTGAAGAAGTATTTGAAAATGTTCAGATCAAAGACGATAGCACAGTATCGGCAGAAGAATATAACACACGTGAAGAGAGCAAAGATGAAATAACTGAAATTGTATTCCAGAAAAAAGTCAAAGAAGATAACAATATTCCGAAAATTCCAGTGCTCCGAAGATCTGAATCTGAACGATTGACTTCGACAATAATCGTCGACCCACCGAAGTTTTTAGATACTATGGCCCTTAGACCGAAGACTAGGCACGGTCACACCAGTCAAGTATTTTTTACTTCTCCTGGAGAAAATAACACAGCTATTGAATATCAACACGAGATTAAACAAATAAATGTTGAGTCATCTAAAGCTACCGAAGAATTTGAGTCAGGGAACTTAAGTGATAGCAGTGATATAACGAGAAGTATTCTGAATAACTTGCGCCGTGGCATATCAGAGTCGCCAGAACCACCGCCTAGACAAAAAGTTAAGGAGCGAACTAAATCTAAGAAGCACACGTATGTAAAAACAAGATTTGTCAGGAATAACTCCAATAGTTCTACGAGTGACGAATGGTCGGACGCAAATGATTACGAACAAAAGACTATATTAAGAGTAAGACAATTTGACCCAGATTCTGAGAACGAAGATCCTAGAACAGTATCGAATGCAACGAAAATAGCTGATAACGAACCTAGAAAAACATCGATTCAAATAAATGGAAACGAATGTTATTCAACAATGAATGTTAGCAGTGATACTCCAATTTATCTTTCATCTGTTGTTGTAAATGATGATGGTGGCAATACTTGTAACACGTATCAAACAGGCACTACTGTAACAATAAGTGTGGGGTCTCCTTTGAAAGAAGTGAAGAAATCAAAAAGTCAAATTTACATTGGAGCGGTTTTTAGTCCGGAAAATAGTAGTCAAGATTTCAATACGTACGAAGAGTACTATGCAGAGAATAAATCGGCTGTGTATAATGACACCATAACCCACGACAGTTCGTCTGATATTTCTTCCATATTGAAAGACCCTGTAGAAGCCGTTAGACGTAACTTAATTCCTCATGTTTGTGGAAAGAAAAACGAGGCTATGAAAGATGCGAACGAAGATAAATGTGAATATGACAACGAAACCGGAAATGGAAATTTCGTTTCGAAACTATTTGACGATCCATTCTTCGGTCATTTAGCTGAAGGCCTTGATTCCGATTTGGTAAAGAAGTTAATAGAAAATTCTTTGATCAAATTACAAGAAACGAAAAATTTGGAAGGTAATGAAAGTAATGAAATAACCATTGAAAAATTAATTGAAAGCTCCCTTAAAAGTATGAAAGAAGAAAATGATAAATTAGTAAATAAAGAGACGACGAATGAAATCAAATATCAGACAAGTGCCAACGAAGGCGAGTCGAAACAGAATAATAACGTCGACTCGTCCGTTTGTGAAAATGACGATAACGGCTGCTCTGCTCCCTATGAAAGTATGGAGTATGAGAGCGGTGCTGCGGGAGTTTTTCCAGATCAAGAACTTATGTCAGATTGCTATAACGCCTCAGCGAGCGAATTATCCACGGAAGACGATACAAATTCAACTAGATCGAAGTTTTATCAAATGTTAGTCGACGCTGCTCTTTGTGAAATCGAAGTTGCTAATAATACGGACGATGATCATCATTATGAATCGATACGTCTAAACACGGATCCTATTTATGAGGAAATTGGTGATATGCCACCACCGTTACCTGTAAACCCTCCACCGAATTCACTGTTAATACTTGACGATGAAAAACGTAGTGGTTCCCGGTCAATATTTGAAGGGGCATCGAAATATGATATTCTGTCGTACTTAGTGGATGCTAAAGAAAGGGGTATTGATGACGAAGAAACATACATTACTAGTTATGCCAATAACGAATCAAGCAATTTACTAGAAGAATCAAAAGAGAAAAATTCTACAAACGAAATTATTGAAACGCGATTGAGTAGTAACAACAGTCAACTTTCAAACGCCTCTGATTCAAGTGAAGATAACTCATTAACTATTCATCACGAGTGCTTAGAGAAGACAGTACTGAGCAAAAAGACGTCAGCAGAAATAGAAAGAAATGATTCAGGAGTTGGTTCAGAGACGAGTAAATCTTCAAGAAGTAGGCTTCAAGGGAAAACCTCGCCCGCTAATTCCATGACACAACAAGAGGCGACTATACATCTTTGCGAAGATTGTGACACTGCTGTTGAAACTCAAGTAACTGAACAAGGTTCTGTTTACGCTCCGCTAGTGTGCAGAAAATGTGCTAAAAAAAGATCCGAAAGAAAGGAGATTATCACTGAAATAGTAGAGACTGAAGAAAAATACGGTCGAGATCTACAGATTATTTTAGAAGAGTTTTACAAACCCATGTTAGTAGCTGGTCTTCTAACGCACGAACAGCTCAGCGCTATATTTTTAAACGTAGAAGAACTTATTGAAAACAATCAAGTACTGTCTGAGAAGCTGAGAGATGGGCTTGAAATTGCTATGGAACAAGGAGATGAGGATTTACTAACGGTGAATGTAGGTAAAATCCTCCTGGAGTGTTCAGGGATGCTAACAGCGTTCCAATCGTACTGCGTAAAGCAAGCCGGTGCCGCTTTGCTATTGGCCGGACTGGAGAAGGAGAAAGAGCTCCTGAGGATATTCTTACGCGTCTCTCAGATGGAAAACACCGTGTTACGACGAATGAATCTAAATTCGTTCCTTATGGTGCCAGTACAACGCGTGACAAAGTATCCCCTCCTTCTCTCTCGGCTTCACCGAGCGACAGCCTCCTGCGCCACCGAGCGGGAAGACGTGCGTTCAGCTCAGCGCTGCGTCGAATCTAGGTTGGAAGAGATCAACGCAGCCGCCGCAGCTGCAGCCGCCGCCGCCAGAGATGTTCCTTTGTGGAGGAGGCTGGCTGCGGCTAGACGCACGGCCCACGACCTGCACGTAGCCGATATAAGGCTCAGGAAGATGGCCGTCGATGTGCTAGATTGGAATCACGATGATGCTAGGTTCGCAATGGAAGGGAAATTGCTCTTCACTCAACCGAACGATAACAATTGGAGGAAAGGCCGCACCATCAAGTTGACGCCGATCAACGCTCTCTTGGTAACCAACGGAAAGCCAACGATAACCCACAAAACGAATGAGATCCGCGAGACCAGAGAAGCGAGAGACCGGGAAGCGAGAGAGAAAGAGGGGGAGACGCTGTTCGCTCGGAGCGGCGTGAGGGAGGCCGCCCTCCTCCTGGTGAGGGAGAAAGCGGGCAGGTACACGCTGCAGAGAGAGCCGTTATTCCTCGACCGCTGTGTGGTGGCCGCTGATCACGAGCCGGAACATTTCTTTGAAGTACACGAAATAACTACAAAAGACTCTTACATATTTAAGGCTGAAGAAAACACACGAACACGATCATGGTATAGGCAGTTGCAGTACCACGCGCAAGGAGCCGGCGCTTGGAGGAAGAGGCGTAACGCACTCGCGAACATAATGATCAACCCGATGCTGACTAGAAATTAA
Protein
MKYAETWLYGSVRTQTPPVRPSVFTAYPEVAGPVLISTPQKPTPHNYAVILCSCPEYLNGTKKTSSTKVSICKKCKGSRLPLTIAESPRLLVGGTVRGPQVSRDTSLLRSGTVRVQGSKSRPTILKSNGEADPYDLMRRSRLAPPHEARIGSQFSTTRSRAKSISPCRIKSKKPIPETLSKSRSKSTSRVNEIWIEEDSNTIESKKSILSCDINPYDLVKASGGSKSLAEIEFDDDYSDVFADSLKNNKGTLTKSKQDSCVKAISGQRVRISDESKNCIVEEIGVYDTVNYDLKNSELKTKEIPSALSLRNNKSENKKLSFSKSTSKKILSIPTSNRTKQKSVSPKRPPRRIRNVNKTDDDSESDNPRLLENNNRIPKNKNSNNDTIKSILKKPRNYELDESLTKIDTFDDTPEHKRANTTLFYLPIPKDKGTISKPSTILQRKRVQFLVENDETKVIYTAELNLEQDIIRESPEQSQTNTETEDDVTEEGDIVSQSLTPEVISHTLTPAIESQSFTAEDTGEALNSVEIAELDKIEEVFENVQIKDDSTVSAEEYNTREESKDEITEIVFQKKVKEDNNIPKIPVLRRSESERLTSTIIVDPPKFLDTMALRPKTRHGHTSQVFFTSPGENNTAIEYQHEIKQINVESSKATEEFESGNLSDSSDITRSILNNLRRGISESPEPPPRQKVKERTKSKKHTYVKTRFVRNNSNSSTSDEWSDANDYEQKTILRVRQFDPDSENEDPRTVSNATKIADNEPRKTSIQINGNECYSTMNVSSDTPIYLSSVVVNDDGGNTCNTYQTGTTVTISVGSPLKEVKKSKSQIYIGAVFSPENSSQDFNTYEEYYAENKSAVYNDTITHDSSSDISSILKDPVEAVRRNLIPHVCGKKNEAMKDANEDKCEYDNETGNGNFVSKLFDDPFFGHLAEGLDSDLVKKLIENSLIKLQETKNLEGNESNEITIEKLIESSLKSMKEENDKLVNKETTNEIKYQTSANEGESKQNNNVDSSVCENDDNGCSAPYESMEYESGAAGVFPDQELMSDCYNASASELSTEDDTNSTRSKFYQMLVDAALCEIEVANNTDDDHHYESIRLNTDPIYEEIGDMPPPLPVNPPPNSLLILDDEKRSGSRSIFEGASKYDILSYLVDAKERGIDDEETYITSYANNESSNLLEESKEKNSTNEIIETRLSSNNSQLSNASDSSEDNSLTIHHECLEKTVLSKKTSAEIERNDSGVGSETSKSSRSRLQGKTSPANSMTQQEATIHLCEDCDTAVETQVTEQGSVYAPLVCRKCAKKRSERKEIITEIVETEEKYGRDLQIILEEFYKPMLVAGLLTHEQLSAIFLNVEELIENNQVLSEKLRDGLEIAMEQGDEDLLTVNVGKILLECSGMLTAFQSYCVKQAGAALLLAGLEKEKELLRIFLRVSQMENTVLRRMNLNSFLMVPVQRVTKYPLLLSRLHRATASCATEREDVRSAQRCVESRLEEINAAAAAAAAAARDVPLWRRLAAARRTAHDLHVADIRLRKMAVDVLDWNHDDARFAMEGKLLFTQPNDNNWRKGRTIKLTPINALLVTNGKPTITHKTNEIRETREARDREAREKEGETLFARSGVREAALLLVREKAGRYTLQREPLFLDRCVVAADHEPEHFFEVHEITTKDSYIFKAEENTRTRSWYRQLQYHAQGAGAWRKRRNALANIMINPMLTRN

Summary

Uniprot
H9JRA0   A0A2A4JTW1   A0A2H1X490   A0A3S2NLF7   A0A194R8Y2   A0A194PKW8   + More
A0A212ERX7   A0A0L7LTG9  
Pubmed
19121390    26354079    22118469    26227816   
EMBL
BABH01016195    BABH01016196    NWSH01000680    PCG74832.1    ODYU01012905    SOQ59444.1    + More
RSAL01000045    RVE50630.1    KQ460779    KPJ12331.1    KQ459606    KPI91750.1    AGBW02012898    OWR44248.1    JTDY01000120    KOB78737.1   
Proteomes
UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000037510   
PRIDE
H9JRA0   
Pfam
PF00621   RhoGEF
Interpro
IPR000219   DH-domain        + More
IPR001849   PH_domain       
IPR035899   DBL_dom_sf       
SUPFAM
SSF48065   SSF48065       
Gene 3D
1.20.900.10    
CDD
cd00160  RhoGEF
ProteinModelPortal
H9JRA0   A0A2A4JTW1   A0A2H1X490   A0A3S2NLF7   A0A194R8Y2   A0A194PKW8   + More
A0A212ERX7   A0A0L7LTG9  
PDB
3JZY     E-value=1.39729e-10,     Score=165

Ontologies

KEGG
101738416    no KO assigned | (RefSeq) uncharacterized LOC101738416
GO
GO:0035023   GO:0005089   GO:0030515   GO:0006396   GO:0004713   GO:0043565   GO:0016567   GO:0016020   GO:0005634   GO:0006260  

Topology

Length:
1710
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00485
Exp number, first 60 AAs:
0.0032
Total prob of N-in:
0.00018
outside
1  -  1710
 
 

Population Genetic Test Statistics

Pi
30.179182
Theta
26.443178
Tajima's D
0.252598
CLR
0.714944
CSRT
0.450927453627319
Interpretation
Uncertain
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