Silkworm Genome Informatics Database

Gene

KWMTBOMO06839

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr11(-):16680112-16681590 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.565

CDS

ATGGAGCGAATTATAAACACACAACTCCTGAAGTATCTTGAGGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTATCGAAGTTACCATCTTACGGAATCTCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCAGATGATAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACGTTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTGCTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCATGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCTCGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTATACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCAACATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTTGCCACGTACCATCCGGCTATGGAATGA

Protein

MERIINTQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGISEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDVSSDVQFRSHLEGKAKLASKMLGVLNRAKRCFTPGQRLLLYKAQVRPRMEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILSDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPTSRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFFATYHPAME

Cofactor

pyridoxal 5'-phosphate

Uniprot

Q6UV17 B9WPT7 A0A3S2NTH0 A0A3S2NMS5 A0A3S2LP03 A0A3S2L424 + More
A0A3S2LQP1 A0A3S2PCY7 A0A3D5S1K1 A0A0P4VXU0 T2M4I6 A0A0P4VTV9 A0A0P4VVV8 A0A0P4VX79 A0A0P4VPK5 A0A1E1XGQ7

Pubmed

30148503 24065732 28503490

EMBL

AY359886 AAQ57129.1 FM995623 CAX36787.1 RSAL01000090 RVE48098.1 + More
RSAL01000002 RVE54942.1 RSAL01002067 RVE40593.1 RSAL01000171 RVE45150.1 RSAL01000422 RVE41792.1 RSAL01000095 RVE47834.1 DPOC01000269 HCX22453.1 GDRN01105059 JAI57791.1 HAAD01000593 CDG66825.1 GDRN01111334 JAI56796.1 GDRN01111277 JAI56804.1 GDRN01111326 JAI56798.1 GDRN01111278 JAI56803.1 GFAC01000919 JAT98269.1

Proteomes

UP000283053

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF04939   RRS1
PF00282   Pyridoxal_deC
PF01585   G-patch
PF03081   Exo70
PF02460   Patched
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR007023   Ribosom_reg
IPR015424   PyrdxlP-dep_Trfase
IPR002129   PyrdxlP-dep_de-COase
IPR021115   Pyridoxal-P_BS
IPR015421   PyrdxlP-dep_Trfase_major
IPR015422   PyrdxlP-dep_Trfase_dom1
IPR010977   Aromatic_deC
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034653   SPF45_RRM
IPR003954   RRM_dom_euk
IPR000467   G_patch_dom
IPR040052   RBM17
IPR035979   RBD_domain_sf
IPR016159   Cullin_repeat-like_dom_sf
IPR004140   Exo70
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf

SUPFAM

SSF56219   SSF56219        + More
SSF53383   SSF53383
SSF54928   SSF54928
SSF74788   SSF74788
SSF57667   SSF57667

Gene 3D

3.60.10.10 3.40.640.10 3.90.1150.10 3.30.70.330

CDD

cd12647 RRM_UHM_SPF45

ProteinModelPortal

Q6UV17 B9WPT7 A0A3S2NTH0 A0A3S2NMS5 A0A3S2LP03 A0A3S2L424 + More
A0A3S2LQP1 A0A3S2PCY7 A0A3D5S1K1 A0A0P4VXU0 T2M4I6 A0A0P4VTV9 A0A0P4VVV8 A0A0P4VX79 A0A0P4VPK5 A0A1E1XGQ7

PDB

6AR3 E-value=3.38218e-05, Score=113

KEGG

101736731 no KO assigned | (RefSeq) uncharacterized LOC101736731

GO

GO:0003964 GO:0004519 GO:0003723 GO:0016021 GO:0003676

PANTHER

PTHR17602 PTHR13288 PTHR45951:SF3

Length:

395

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06272

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.01103

outside

1 - 395

Pi

3.816501

Theta

4.641527

Tajima's D

-0.787099

CLR

16.048349

CSRT

0.180640967951602

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree