Gene

KWMTBOMO06835  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012059

Annotation

PREDICTED:_U3_small_nucleolar_RNA-associated_protein_6_homolog_[Papilio_xuthus]

Location

Bomo_Chr11(+):16599481-16603175      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.911

CDS

ATGGCTGAACAAGTAAATCAACGTATTGAGAATATGATAAATGAGTTGGAGCAAATGAGAAGAACAAACTTATATACAGATGAAGAGATAAAAGAAATATCCCAAAAACGAAAAGAGTTTGAATATCACATACAAAGGAGAGTCAAACAAAAAGAAGATTATGTTCAATACATCGCTTATGAACTTGCCTTACTTGAGGATATAACAACGCGTAGAAAAAAAATACAACTAACAGAGAAGAAAAAGGATTTGGAGTATGCCATTGCTCAACGTTTGAACCAACTTTTCAAGCGCTTTATTTATAAGTTCCAAAATGAAATTGAAATATATTTTGAGTATATAAAATTCTGTAAGGGTGTGGGGTTTCAACAGGCTATCTCAGGTATCATCGGACAAATGTTGCAGATACATGGTGATAAACCTCAAATGTGGTTGATGGCGAGCAAATGGGAGAGTTTAGAACAGAACAATCTAGAAAATGCAAAGGCCTTTCTTTTAAAGGGAATTCAAAGAAACCCTGATGCTGAGCCATTGTACCTTGAATTGTTCAACATTGAGCTAATTGATTTGTGCTTTAAGGCGGAGACTGACGAAGAAAAGGAGAAACTGCAAAAGAAGGCTGATATAATCTGGAGAAACGGAGCAAAGAATATCCAAAATGTGAAGTTTCTATTCAAATTGTATGACTTGTGTACCAAGTATGAATATACCGGTGGATTAGTGGACGATATAAAACTTGAAATATGGTCAAATCGTAATAACCAAGAAGTTTGGCCTTATCTTGCATTGAAGGAACTGGAAGGTTTTCATTGGAAGGAAATAGAGGAATTTGCTGATGATGAACATAATTTTCCTAAAGTTGTTGGTTATGTAATAGGTATTTACGAAGAAGCACTGCAATTGTTTATGGACGAAAATTTATGCACACGTTTCATCCATGATTTGCTTGGTATGAGTGAAGATATATGTTCCGATCAACAAAAAATCAAAGCTGTAAAACATGCTTGGATGTACGGTCATGACAATGGTCTTCTCAGCAATGACATGTATGCGTTTGGCATTGAAATGTTGAAACTGGAGAATGAGACAACTACTGATGAACTATTAGAGATCTTAAATGCAGCAATAAAGAGAAATCCCAAACTAAAGAGTGTCTGGGAACAGTTGTTACTTCATAAAAAAGACGATGAGAAACAACTTTTAGTAATACTACAAAATGCAACAAAGTCTTTGAATACTGGTGATGCCTTGCAGTTGTATAATATTCTATTAGATAACATTGAATCAGGGCCTATGATCAAAACCCTATACAAGAAGTTTCAAAATTGTGACAATGCAATTCTTCTTGCTGTTAAACCAAAACTTTTACAGAAAATGTACGAACATAATGGCCTGAAAGCTACTAGGGAATTGTATGAAGATTTTATTAGGACACCACCAACACAAATTGAACTTCATAAAATAATGATCAATATCGAAAAATCGCAAGAAAAGCTAAATTTGAAAGCAATTAGAAAATGTTATGAGTGTGCTGTGCATCATCACGGGACTGACAACAAAGAAATTTGGGCAGATTATATTAATTTTGAAATTGAGAATGGGAATGCTCCAAATTCAGCAGTTGTATATAGAAGAGCTGTGGGCATGCTCAAGAAAGATATTGTTGATGAGTTTATTAGAGATCAAACTTTATCAAAAATAAAATGA

Protein

MAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVQYIAYELALLEDITTRRKKIQLTEKKKDLEYAIAQRLNQLFKRFIYKFQNEIEIYFEYIKFCKGVGFQQAISGIIGQMLQIHGDKPQMWLMASKWESLEQNNLENAKAFLLKGIQRNPDAEPLYLELFNIELIDLCFKAETDEEKEKLQKKADIIWRNGAKNIQNVKFLFKLYDLCTKYEYTGGLVDDIKLEIWSNRNNQEVWPYLALKELEGFHWKEIEEFADDEHNFPKVVGYVIGIYEEALQLFMDENLCTRFIHDLLGMSEDICSDQQKIKAVKHAWMYGHDNGLLSNDMYAFGIEMLKLENETTTDELLEILNAAIKRNPKLKSVWEQLLLHKKDDEKQLLVILQNATKSLNTGDALQLYNILLDNIESGPMIKTLYKKFQNCDNAILLAVKPKLLQKMYEHNGLKATRELYEDFIRTPPTQIELHKIMINIEKSQEKLNLKAIRKCYECAVHHHGTDNKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEFIRDQTLSKIK

Uniprot

A0A2A4JU10   A0A2H1W965   A0A1E1WCU7   A0A194PFF5   A0A194R487   A0A3S2NWH1   + More
A0A212ERY2   A0A0L7LAS7   A0A1E1WND8   A0A067RGS1   A0A0L7QXW4   A0A2J7QS59   E2BZ17   A0A0C9QS71   A0A087ZQI1   A0A2A3E472   A0A232ETI9   K7JA79   A0A195CXK4   E2AAN7   T1HPQ3   A0A154P8Y7   E2BZ18   A0A0P4VPP8   A0A224XA13   A0A195FX33   A0A195ATW6   A0A023FA15   A0A0V0G6L9   F4WUU5   A0A151JCL0   A0A158P0T0   A0A336LW32   A0A151WW60   A0A3L8E0X1   H9GF89   A0A1L8DFJ2   R4WST9   E9IZA8   U3FZ92   A0A2R5L4Z8   A0A0F7Z2C8   A0A026VWK0   A0A023GLK8   U3JHX0   H0Z3L4   A0A1B0CGG0   A0A1B6E402   A0A1B6HLF9   A0A1W7RBR5   A0A1B6GID5   A0A218UWU7   F1NLG7   A0A1S3IB83   G3MNC1   A0A3L8SBT8   A0A293MWJ1   A0A2D4H9X5   A0A147BSV4   A0A1U8DSY5   A0A0Q3TFY5   A0A1U7RND9   A0A131XVT8   A0A091F0S4   E9GVM3   W5UE51   E0W1D1   A0A1E1XR21   A0A1A7WJX9   A0A099ZDL5   A0A3P8XPJ1   A0A1E1X2J2   A0A1V4KW80   A0A131XLP9   A0A1Z5KVB9   H3BC90   A0A224Z2S1   A0A060XD50   A0A131YT66   A0A0C9PQJ7   A0A3B4EJ79   A0A3Q2GPQ8   K7G189   A0A2R8RMC9   A0A3Q1BIA4   A0A0R4IGM5   A9JTC5   A0A1A8GSY8   A0A1U7QXW4   A0A1A8AL68   A0A3P8U3X4   L7M6U4   A0A1A8LL24   A0A3Q2W658   A0A3P8NYI3   A0A3P9DBZ2   Q803K2  

Pubmed

26354079    22118469    26227816    24845553    20798317    28648823    + More
20075255    27129103    25474469    21719571    21347285    30249741    21881562    23691247    21282665    23915248    24508170    20360741    26358130    15592404    22216098    30282656    29652888    21292972    23127152    20566863    29209593    25069045    28503490    28049606    28528879    9215903    28797301    24755649    26830274    17381049    23594743    25576852    25186727   

EMBL

NWSH01000618    PCG75266.1    ODYU01007134    SOQ49639.1    GDQN01006246    JAT84808.1    + More
KQ459606    KPI91753.1    KQ460779    KPJ12334.1    RSAL01000045    RVE50627.1    AGBW02012898    OWR44253.1    JTDY01002015    KOB72321.1    GDQN01002540    JAT88514.1    KK852649    KDR19476.1    KQ414699    KOC63457.1    NEVH01011878    PNF31407.1    GL451549    EFN79056.1    GBYB01003497    JAG73264.1    KZ288386    PBC26488.1    NNAY01002265    OXU21679.1    AAZX01008028    KQ977141    KYN05376.1    GL438137    EFN69487.1    ACPB03001895    KQ434846    KZC08369.1    EFN79057.1    GDKW01001618    JAI54977.1    GFTR01007229    JAW09197.1    KQ981200    KYN44998.1    KQ976738    KYM75673.1    GBBI01000390    JAC18322.1    GECL01002385    JAP03739.1    GL888378    EGI62009.1    KQ979038    KYN23468.1    ADTU01005780    ADTU01005781    UFQS01000144    UFQT01000144    SSX00473.1    SSX20853.1    KQ982691    KYQ52068.1    QOIP01000001    RLU26381.1    AAWZ02011871    GFDF01008852    JAV05232.1    AK417782    BAN20997.1    GL767121    EFZ14077.1    GAEP01001041    JAB53780.1    GGLE01000391    MBY04517.1    GBEX01003779    JAI10781.1    KK107921    EZA47219.1    GBBM01000689    JAC34729.1    AGTO01011150    ABQF01037331    AJWK01011081    GEDC01021530    GEDC01004632    JAS15768.1    JAS32666.1    GECU01032187    GECU01010668    JAS75519.1    JAS97038.1    GDAY02002883    JAV48584.1    GECZ01007584    JAS62185.1    MUZQ01000104    OWK58275.1    AADN05000628    JO843372    AEO34989.1    QUSF01000033    RLV99258.1    GFWV01018972    MAA43700.1    IACK01020264    LAA68780.1    GEGO01001949    JAR93455.1    LMAW01002589    KQK79454.1    GEFM01006010    JAP69786.1    KK719227    KFO62129.1    GL732568    EFX76504.1    JT413274    AHH40180.1    DS235869    EEB19437.1    GFAA01001672    JAU01763.1    HADW01004439    HADX01010770    SBP05839.1    KL892480    KGL79867.1    GFAC01005703    JAT93485.1    LSYS01001520    OPJ88561.1    GEFH01002130    JAP66451.1    GFJQ02007918    JAV99051.1    AFYH01051099    AFYH01051100    GFPF01013012    MAA24158.1    FR904998    CDQ74760.1    GEDV01006877    JAP81680.1    GBYB01003498    JAG73265.1    AGCU01100770    AGCU01100771    AGCU01100772    BX663498    AL954746    CR589950    BC155285    AAI55286.1    HAEB01013598    HAEC01006205    SBQ74282.1    HADY01016475    HAEJ01015245    SBP54960.1    GACK01005018    JAA60016.1    HAEF01007207    HAEG01013045    SBR44589.1    BC044444    AAH44444.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    UP000037510    + More
UP000027135    UP000053825    UP000235965    UP000008237    UP000005203    UP000242457    UP000215335    UP000002358    UP000078542    UP000000311    UP000015103    UP000076502    UP000078541    UP000078540    UP000007755    UP000078492    UP000005205    UP000075809    UP000279307    UP000001646    UP000053097    UP000016665    UP000007754    UP000092461    UP000197619    UP000000539    UP000085678    UP000276834    UP000189705    UP000051836    UP000052976    UP000000305    UP000221080    UP000009046    UP000053641    UP000265140    UP000190648    UP000008672    UP000193380    UP000261440    UP000265020    UP000007267    UP000000437    UP000257160    UP000189706    UP000265080    UP000264840    UP000265100    UP000265160   

Pfam

PF08640   U3_assoc_6        + More
PF15340   COPR5

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR003107   HAT       
IPR013949   Utp6       
IPR029289   COPR5       
IPR013026   TPR-contain_dom       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A2A4JU10   A0A2H1W965   A0A1E1WCU7   A0A194PFF5   A0A194R487   A0A3S2NWH1   + More
A0A212ERY2   A0A0L7LAS7   A0A1E1WND8   A0A067RGS1   A0A0L7QXW4   A0A2J7QS59   E2BZ17   A0A0C9QS71   A0A087ZQI1   A0A2A3E472   A0A232ETI9   K7JA79   A0A195CXK4   E2AAN7   T1HPQ3   A0A154P8Y7   E2BZ18   A0A0P4VPP8   A0A224XA13   A0A195FX33   A0A195ATW6   A0A023FA15   A0A0V0G6L9   F4WUU5   A0A151JCL0   A0A158P0T0   A0A336LW32   A0A151WW60   A0A3L8E0X1   H9GF89   A0A1L8DFJ2   R4WST9   E9IZA8   U3FZ92   A0A2R5L4Z8   A0A0F7Z2C8   A0A026VWK0   A0A023GLK8   U3JHX0   H0Z3L4   A0A1B0CGG0   A0A1B6E402   A0A1B6HLF9   A0A1W7RBR5   A0A1B6GID5   A0A218UWU7   F1NLG7   A0A1S3IB83   G3MNC1   A0A3L8SBT8   A0A293MWJ1   A0A2D4H9X5   A0A147BSV4   A0A1U8DSY5   A0A0Q3TFY5   A0A1U7RND9   A0A131XVT8   A0A091F0S4   E9GVM3   W5UE51   E0W1D1   A0A1E1XR21   A0A1A7WJX9   A0A099ZDL5   A0A3P8XPJ1   A0A1E1X2J2   A0A1V4KW80   A0A131XLP9   A0A1Z5KVB9   H3BC90   A0A224Z2S1   A0A060XD50   A0A131YT66   A0A0C9PQJ7   A0A3B4EJ79   A0A3Q2GPQ8   K7G189   A0A2R8RMC9   A0A3Q1BIA4   A0A0R4IGM5   A9JTC5   A0A1A8GSY8   A0A1U7QXW4   A0A1A8AL68   A0A3P8U3X4   L7M6U4   A0A1A8LL24   A0A3Q2W658   A0A3P8NYI3   A0A3P9DBZ2   Q803K2  

PDB

5WLC     E-value=7.16749e-15,     Score=198

KEGG

101739847    K14557 U3 small nucleolar RNA-associated protein 6 | (RefSeq) U3 small nucleolar RNA-associated prot

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0030515   GO:0000462   GO:0034388   GO:0032040   GO:0005730   GO:0043985   GO:0005634   GO:0042393   GO:0006396   GO:0005515   GO:0004713   GO:0043565   GO:0016567   GO:0016020   GO:0006260  

Length:

568

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0890299999999999

Exp number, first 60 AAs:

0.00057

Total prob of N-in:

0.00810

outside

1  -  568

 

 

Pi

32.10366

Theta

29.119574

Tajima's D

0.280458

CLR

0.699429

CSRT

0.461026948652567

Interpretation

Uncertain