Silkworm Genome Informatics Database

Gene

KWMTBOMO06834

Pre Gene Modal

BGIBMGA012058

Annotation

PREDICTED:_tonsoku-like_protein_[Amyelois_transitella]

Location

Bomo_Chr11(+):16578941-16597666 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.26

CDS

ATGGAAGAAGAAAAACTTTTGCGTAAAAAAAAGAAAGCTCTAAACGGAAGTAACAGAAGAGCCTTAGCAGAAGCTTGTAATGATTTAGCTACGTTTTATTACAAAAATAATCGGTACAATGACGCTCTCGACGAGTATAAAATTGAAGCCTCGGTATGCAAAGAGTTGGGTCTCCGTATGGAATGGGGAACTTGCAGCAGGATGATCGGCGAGATGTACATGTTAATGGCTGAATTTGATAAAGCCCTGAAATACGAAGAGAGACATTTGGCTGTAGCTAAAGAATTAAAGAATTTAGTGGAAGAACAAAGAGCTATGGCAACATTAGGCAGGATATATCTGCTACAAGGACAAAGCACAATTGATGAAGTTGAGGCAAAGACATCTCTGAATGCAGCAGAAAAAGCTTTCATGAAAAGCTTAGTGTTGTGTGAAAATCTAAATGGAAAAATAAATAAACATGAGTTAATGGACATGAGAGCCCGATTACTCCTGAATATTGGTGTGGTCCAAGAACACCTTGGTTTTCTTGAAAAAGCAACAGATTGTATACATAAAGCAATCTCAATATGTTCTAATCAGGACTTGTATGAAGTATTGCATAATTGTTATATGACTGAAGCATTGCTACATAGCAATAAAAAGAAGGATTATGCAAAAGCTTTAAGTTGCTTGAATAAAGCCCTTGAAATAGCAAGTAGACTGGAGAATAAGGTTCTGAAGACGTGTGAAACACTATCATCAAAAGCAGACATACTGTGCAAAATCTCAGACTATCAGAGTGCCAAACAAGTGCTCCTCAAAGCATGGAAGTTGAAGACCCCTGATGAAGAAGAAAGGGATAATATTGAAACAAATTTGAGAGTTGTGGCGGCAATGTGCTATACAGAAGATCTCTTAATCTCAACGAACCCATCAGACCACGCGACCTTCAAGAAACTTTATGAGAAGCTTGGAGATGGAGCTTGTCACATTCGGAATTATCCCGGGGCCGTAGAGTATTATCTGAAGATGTTGGAACACGCTGAACTAGCTGGAGATTGTGGAAAGACTTTAATACCCATTTATGTTAGCTTGTATCAAACATACAAAGACATGGGTTTGTATAGTGAAGCCTTAGATTATTACGAGAAAGAATACGAACTTATAAAGGATGTCCCGAAAGAAGCATACACTACACTCTACAACATTGCGGAGACATTGTATCTGGCTAAGAGGCCTTATGAACAAGTAGAAGAGGCATGTTTAAATGCTCGGAAAGCTGCACAAGCTTGGAATAAAAGGAAATATGAAATCAGAATATTAAGAAATCTTCTAAAATACCAAGAGGCATATTTTGAGATTGATAAAACGGAAGAGACCAAATATGAACTAAGAACATTAGGCTGTGATAATTTTGACAACGTGGAGCATTCCGAAGATGATCAAAGTTCAGCGGGTGGGGGGGACGATGACACGACTCATATCGGTGATGATATATGCCTCGATGATCTTACAGATATGTCTGACACAAATGAAGAAGACGTGACAGAGACGAAACGCGAGACAAGAAAGAGAGGGAAGGGCTATGTTATAAAGAAAAATATGAAAGGCGAAACACAGTTACATGTAGCTGCTATATCCGGAAACAAACTTCTGTTGGAACGGCTTCTAGCCAAAGGACATCCGGTCAATATCAGGGACAATGCCGGCTGGCTACCCCTACACGAGGCTTGCATTCATGGGCACCTTGAAATAGCTAACATGCTCATACACAACGGAGCCAATGTCAATGATCGGGGCGGCTCCAACTGTGATGGTATTACCCCGCTGTATGACGCCGCCAGTAATGGTCATCTCGAAGTCGTACAGCTACTCCTAGAAAAGGGCGCGATACCTTCACTGAAGACAGACTTCGGGGACACGCCCTTAAGGGCACTGCAGAAATGGCGGGCCGGCACTATCCTCACCAGAGACGAAGAAACCATGTACAATAACGTGTGCAATAAAATCCAAAATTCAAGCGATAGAACCAACGCTGACCTAAGGTGCAAATCGGTGACTCCGGTCAAAAATGAAGACGAAATCGCTCCGCCAAGCACGTCAAAATCCAAGAGGAATCTAGACTCACCGGCGCTCAGACGCAGAAATATCATTGATGACGGCAGCGATGACGAAATCGATCTGTCTCAGAACGTCCGGAGAGAATTGGCGTTCCCGTCCGACGATTCAAACGATTCCGACGAAAAATCAAACGTTAATATTGAGGTTTCCGGTGTCAAAGAGTACAGGAATGCCATGTCCGCTTTGAGAAACAGAAACCTCAACGACCATTCTGAAGTTAATACGAAAAAGACGAAGCCTAAGTCAGCTCTGTTAGCCCCCGAAGAGGTCGACGATGATTGGTTGGAAGACGATTTGGGTATTCATAAAAATAAAAAGAGAAAACTCAGCGACCCACTCACGATCGTCTCGAAGAAACCTTCGTACGAACAAATCAAGGAAAGCGTTGACAGTATCAATAGCATACCAGAACCTCTGATCGAAAATACCTTGAAACAAAACAGGTCACGGATCGATGACGTCATCGATATAGACTATATCTCGGATTACGATCGGGTAGACGAGAACATTCGACCCGAAGCAAGTCCCGCCAAATTCGCGAGGAACAATACAAGAGAATTAGATTTTAAGACGAACGACAGCAGGGAGAACATGAGGAAACGCTGGAAGCGCCAGAGCACGCTACTGAAGTCCGGCTTCCAGAGGAAACTGGACGAGGACCAATCTAGTAACAGCGGAAGTGAAACCGAATTTACTAGAAGAGACTCTTTTCATGCTAGAAACAAGTCGATCTCCCGACATTCTTCCGCCGAAAATTTCAATGAAGGCTTCAATATAATGCAAAATATTAATCCTAATATCGTCCAACCGGTAAATGTGATACAGCCAATTAATATAGTCAAATCGACGAAGAACGGGAGGCCGGTACAGACGCAGATACTACCACCGGCCGCCGTGAAGGTTCACATAGAGGACAAAGTGTTGCTGATCTCTTTGAAATTGGACACAATAAACAGATTGACGATAAGCTGGCTGGTTGAGGAAGTCAAGACCAGATATTATAAACTGACCGGCGTGCGTCCAGTGTTCAGCCTGATGACGTCAGACGGTGCGATTCTCTCCGAAGACGACCCCCTGAGCCTGGTGCTCTCGTCGCCCGAACTGAAGACCTGCATCACCAACTGGAAGGCTTCTCCAGCTGAAGAACGATACTTGGAGTGCTGTGATGCTTTGGGAACGTCGCCCTCGAAGGAAATTCAAGAGGCAATCGGCCGGAGTCTCACGACTCGCAGACTGGCGCTCGGTCCGCGGACGCTCTCCTCCTCGCAAACACGACCCCTCTTCAGAGCGATCACCCACCAAACACACATCACGGCCATCATAATGTCGGACAACAATTTGGGAGACGCCGGCGTCAAACATCTAGTTGATTGTGTGTCGACATTGAAACACCTGACGCTGATTGATATCAGCAAAAACAATATCTCCAGTGAAGGAACGAAATTGATACTGAACTTGTTCGAGAAATCGCCCAGAATGGTGTGTCAATCGTTAGAGGAATTTGTAATTAGCAACAATCCAATTTCTGATGACGGATTCCGGAATATAATCAGAATGTTTGATTTGGAGTTGAACAATGTGGGATTGGAAGGGAGTGCCGTTGGATGTGTTGCCAGCTTTCTGGATTCTGCTAAAGATTTAAAGTTGAGGCGCTTTGGTTTATCGAACTGTAAACTCGTCGATGGACAGTTTATGAGGATATTCAGAAGCCTGAGCAGAGCCAAACACCTACAATCAATAAGTCTAAGGAAAAACAACATAACGTTTATAACACTCAAGAAACTGCTACAAAGACAGCCGCCCGTGCCACAAGTCAACTTAGAAGGGTGCCCGGACATATTCAAGTACTCGCCCGATTCAGATTTTCAAGTGTGGCTACCAGCAGTCAACTTTGGACGGTGTTTACCAGAAATCAATGTCACCCCAGTGTCTAAGAGCGAGGAGGAGAGAGACAGTTTTAAGTCTTTCTCTAAAACCTGGCTCAGTTGTTTCAATGGTAGGGGTGTCATAGAACATTGCGATGGAACAGTAATCAAATTAACGGCTAGGTGA

Protein

MEEEKLLRKKKKALNGSNRRALAEACNDLATFYYKNNRYNDALDEYKIEASVCKELGLRMEWGTCSRMIGEMYMLMAEFDKALKYEERHLAVAKELKNLVEEQRAMATLGRIYLLQGQSTIDEVEAKTSLNAAEKAFMKSLVLCENLNGKINKHELMDMRARLLLNIGVVQEHLGFLEKATDCIHKAISICSNQDLYEVLHNCYMTEALLHSNKKKDYAKALSCLNKALEIASRLENKVLKTCETLSSKADILCKISDYQSAKQVLLKAWKLKTPDEEERDNIETNLRVVAAMCYTEDLLISTNPSDHATFKKLYEKLGDGACHIRNYPGAVEYYLKMLEHAELAGDCGKTLIPIYVSLYQTYKDMGLYSEALDYYEKEYELIKDVPKEAYTTLYNIAETLYLAKRPYEQVEEACLNARKAAQAWNKRKYEIRILRNLLKYQEAYFEIDKTEETKYELRTLGCDNFDNVEHSEDDQSSAGGGDDDTTHIGDDICLDDLTDMSDTNEEDVTETKRETRKRGKGYVIKKNMKGETQLHVAAISGNKLLLERLLAKGHPVNIRDNAGWLPLHEACIHGHLEIANMLIHNGANVNDRGGSNCDGITPLYDAASNGHLEVVQLLLEKGAIPSLKTDFGDTPLRALQKWRAGTILTRDEETMYNNVCNKIQNSSDRTNADLRCKSVTPVKNEDEIAPPSTSKSKRNLDSPALRRRNIIDDGSDDEIDLSQNVRRELAFPSDDSNDSDEKSNVNIEVSGVKEYRNAMSALRNRNLNDHSEVNTKKTKPKSALLAPEEVDDDWLEDDLGIHKNKKRKLSDPLTIVSKKPSYEQIKESVDSINSIPEPLIENTLKQNRSRIDDVIDIDYISDYDRVDENIRPEASPAKFARNNTRELDFKTNDSRENMRKRWKRQSTLLKSGFQRKLDEDQSSNSGSETEFTRRDSFHARNKSISRHSSAENFNEGFNIMQNINPNIVQPVNVIQPINIVKSTKNGRPVQTQILPPAAVKVHIEDKVLLISLKLDTINRLTISWLVEEVKTRYYKLTGVRPVFSLMTSDGAILSEDDPLSLVLSSPELKTCITNWKASPAEERYLECCDALGTSPSKEIQEAIGRSLTTRRLALGPRTLSSSQTRPLFRAITHQTHITAIIMSDNNLGDAGVKHLVDCVSTLKHLTLIDISKNNISSEGTKLILNLFEKSPRMVCQSLEEFVISNNPISDDGFRNIIRMFDLELNNVGLEGSAVGCVASFLDSAKDLKLRRFGLSNCKLVDGQFMRIFRSLSRAKHLQSISLRKNNITFITLKKLLQRQPPVPQVNLEGCPDIFKYSPDSDFQVWLPAVNFGRCLPEINVTPVSKSEEERDSFKSFSKTWLSCFNGRGVIEHCDGTVIKLTAR

Similarity

Belongs to the tetraspanin (TM4SF) family.

Uniprot

H9JR98 A0A3S2M3Q2 A0A194PEQ4 A0A194R492 A0A212ES30 A0A2H1W997 + More
A0A0L7KP64 A0A1I8Q8X6 A0A0J9RQV1 Q2M112 B4GQT7 B4PCA9 B4N6W5 A0A1W4VNA5 B4LGR6 A0A336LVF7 A0A0T6B1S4 A0A0Q9WTK6

Pubmed

19121390 26354079 22118469 26227816 22936249 15632085 + More
17994087 17550304

EMBL

BABH01016216 RSAL01000045 RVE50626.1 KQ459606 KPI91757.1 KQ460779 + More
KPJ12339.1 AGBW02012898 OWR44254.1 ODYU01007134 SOQ49640.1 JTDY01008094 KOB64744.1 CM002912 KMY98198.1 KMY98199.1 CH379069 EAL30762.1 CH479188 EDW40122.1 CM000159 EDW93794.1 CH964168 EDW80104.1 CH940647 EDW70531.2 UFQS01000219 UFQT01000219 SSX01535.1 SSX21915.1 LJIG01016206 KRT81298.1 KRF84961.1

Proteomes

UP000005204 UP000283053 UP000053268 UP000053240 UP000007151 UP000037510 + More
UP000095300 UP000001819 UP000008744 UP000002282 UP000007798 UP000192221 UP000008792

PRIDE

H9JR98

Pfam

PF12796   Ank_2        + More
PF00023   Ank
PF13516   LRR_6
PF13181   TPR_8
PF13176   TPR_7
PF00335   Tetraspanin

Interpro

IPR019734   TPR_repeat        + More
IPR001611   Leu-rich_rpt
IPR011990   TPR-like_helical_dom_sf
IPR036770   Ankyrin_rpt-contain_sf
IPR020683   Ankyrin_rpt-contain_dom
IPR002110   Ankyrin_rpt
IPR032675   LRR_dom_sf
IPR013026   TPR-contain_dom
IPR006553   Leu-rich_rpt_Cys-con_subtyp
IPR001995   Peptidase_A2_cat
IPR008952   Tetraspanin_EC2_sf
IPR018499   Tetraspanin/Peripherin

SUPFAM

SSF48452   SSF48452        + More
SSF48403   SSF48403
SSF48652   SSF48652

Gene 3D

1.25.40.10 1.25.40.20 3.80.10.10 1.10.1450.10

CDD

cd00204 ANK

ProteinModelPortal

H9JR98 A0A3S2M3Q2 A0A194PEQ4 A0A194R492 A0A212ES30 A0A2H1W997 + More
A0A0L7KP64 A0A1I8Q8X6 A0A0J9RQV1 Q2M112 B4GQT7 B4PCA9 B4N6W5 A0A1W4VNA5 B4LGR6 A0A336LVF7 A0A0T6B1S4 A0A0Q9WTK6

PDB

5JA4 E-value=1.868e-30, Score=336

KEGG

NA

GO

GO:0004190 GO:0016021 GO:0005515 GO:0006468 GO:0005524 GO:0004713 GO:0043565 GO:0016567 GO:0016020 GO:0005634 GO:0006260

Length:

1384

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00974

Exp number, first 60 AAs:

0.0001

Total prob of N-in:

0.00007

outside

1 - 1384

Pi

22.992818

Theta

23.483132

Tajima's D

0.040577

CLR

1.345477

CSRT

0.381480925953702

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics