Silkworm Genome Informatics Database

Gene

KWMTBOMO06829

Pre Gene Modal

BGIBMGA012098

Annotation

PREDICTED:_GTP-binding_protein_Rhes_[Amyelois_transitella]

Location

Bomo_Chr11(-):16341963-16402001 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.224

CDS

ATGTCGAACGGAGCTGAGCGTGGCAGTTTGGCGCTGCAGTCTTCGCCTGTGAAGTCTACGTCGCCCGTCAGAGCTTCCCCGAGTCCGGTCAGGGCTCCGCCGTCGCCGTTGAAATCGTCGTTGTCGACTGGACGGCAACGGTCGCCGAGGAAATGCCAGTTTGCCGCGCCGTCTGAAGATGCTCGTGATAAGTGTGGGGCGTCGTGGTTGTGCCGACGTGGGGCTGGAGTGGAGGAGTCGGAACCTGAGCGGTCTCCGGGGCCGAGTGTACCTCTGCCCCAAGCCTGCGAGGAAAGCGCGCCTCCACCAAAGAACTGCTTCAGACTTGTCATGTTGGGGTCAGCACGTGTGGGCAAGACCTCATTAGTAGCCCGGTTCCTAGGCACGAAATTCGAAGACAGCTACACGCCCACCATAGAAGACTTCCACCGCAAGCTATACCGAATCCGCGGAGAGGTCTATCAATTGGATCTGCTCGACACCTCTGGGAACCACCCCTTCCCTGCGATGAGGAGGCTTTCATTTCTAACAGGTGATCTCTTCGTGTTAGTATTCGCTATGGACAGCCGCGAGTCCTTCGAGGAGGTCATTCGACTTCGGGAACAGATCTTGGAGACGAAGGCGAGCGCTAGCAGCAGCAACCGCGGGCGTCGACAAGTGCCCAGGGTCCCAATGGCTATTGCCGGGAACAAGTGTGATAAGGAACTTAAGACGGTGCAAGCTGAAGAAGCTCATGCCTATTGCACAACACAAGATTCAGCCTGTGTCTTCGTCGAAACATCGGCCAAGAAAAATTCTCACGTCGACGATCTCTTCTACGAACTATTTGTTGTCGCAAACTTACCTCTAGAAATGGCCCCAAACCATCACAAACGCGTCAGCACGGCCTTCGGGAGCCCGTGCACTCTCCCTCCTACCAGCAGTCAGAGTAATCGAAGCAAAAAATGTACATTATCGATAAAAAGAAGATTGTCTGATGCTTGCGGGGTCGTTGCTCCAAACGTGAGGCGGCCTAGTATTCGGACAGATCTGATGATAATGAGAACGAAGACTTGTGCCAAAGGCGACGGAGACAGCTCTAGCGGCAGTCCCAAGCTCACTCTCAACAGACTGGTGCGACCGACCGGACAAAATGAGAAGCGATCATGCGTTATACAGTGA

Protein

MSNGAERGSLALQSSPVKSTSPVRASPSPVRAPPSPLKSSLSTGRQRSPRKCQFAAPSEDARDKCGASWLCRRGAGVEESEPERSPGPSVPLPQACEESAPPPKNCFRLVMLGSARVGKTSLVARFLGTKFEDSYTPTIEDFHRKLYRIRGEVYQLDLLDTSGNHPFPAMRRLSFLTGDLFVLVFAMDSRESFEEVIRLREQILETKASASSSNRGRRQVPRVPMAIAGNKCDKELKTVQAEEAHAYCTTQDSACVFVETSAKKNSHVDDLFYELFVVANLPLEMAPNHHKRVSTAFGSPCTLPPTSSQSNRSKKCTLSIKRRLSDACGVVAPNVRRPSIRTDLMIMRTKTCAKGDGDSSSGSPKLTLNRLVRPTGQNEKRSCVIQ

Uniprot

A0A3S2PGC9 A0A194PFF9 A0A194R523 A0A336M1Z8 F4WGG2 E2AKT6 + More
A0A195F618 A0A151WJK9 A0A195EGW1 A0A0P5F4M0 E9FRT5 A0A0P5EPY4 A0A0P5FFT0

Pubmed

26354079 21719571 20798317 21292972

EMBL

RSAL01000045 RVE50622.1 KQ459606 KPI91758.1 KQ460779 KPJ12340.1 + More
UFQT01000412 SSX24070.1 GL888128 EGI66929.1 GL440405 EFN65959.1 KQ981763 KYN36035.1 KQ983039 KYQ48042.1 KQ978957 KYN27127.1 GDIQ01265834 GDIP01009268 JAJ85890.1 JAM94447.1 GL732523 EFX89903.1 GDIQ01266826 JAJ84898.1 GDIQ01258221 JAJ93503.1

Proteomes

UP000283053 UP000053268 UP000053240 UP000007755 UP000000311 UP000078541 + More
UP000075809 UP000078492 UP000000305

Pfam

PF00071 Ras

Interpro

IPR005225   Small_GTP-bd_dom        + More
IPR001806   Small_GTPase
IPR020849   Small_GTPase_Ras-type
IPR027417   P-loop_NTPase

SUPFAM

SSF52540 SSF52540

ProteinModelPortal

A0A3S2PGC9 A0A194PFF9 A0A194R523 A0A336M1Z8 F4WGG2 E2AKT6 + More
A0A195F618 A0A151WJK9 A0A195EGW1 A0A0P5F4M0 E9FRT5 A0A0P5EPY4 A0A0P5FFT0

PDB

2ERX E-value=1.3324e-28, Score=314

KEGG

105842521 K07843 RAS, dexamethasone-induced Ras-related protein 1 | (RefSeq) GTP-binding protein Rhes

GO

GO:0005525 GO:0007165 GO:0016020 GO:0003924 GO:0007264 GO:0003824 GO:0043565 GO:0016567 GO:0005634 GO:0006260

Length:

386

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00535999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00604

outside

1 - 386

Pi

23.027389

Theta

23.356872

Tajima's D

-1.41185

CLR

0.904289

CSRT

0.0662966851657417

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics