SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06814
Pre Gene Modal
BGIBMGA012049
Annotation
PREDICTED:_tyrosine-protein_phosphatase_Lar_isoform_X5_[Papilio_xuthus]
Full name
Tyrosine-protein phosphatase Lar       + More
Receptor-type tyrosine-protein phosphatase delta      
Alternative Name
Protein-tyrosine-phosphate phosphohydrolase
dLAR
Location in the cell
Nuclear   Reliability : 2.346
 

Sequence

CDS
ATGTATCCCGAAAATACGACAACTGTTCGCGCGCGTCAAAAATCCTTCTTATATCTAACAGACGAAGAATCCGAAGATACCGAACCGCCATCAGAAGTGCCAGAATTACCAGAAGAACCACAAGTACAGGAAACGCCAGAGATCCCGCAAGCTCCGGATAGCTCAGGAATACCAGAAACGCCATCCATACCAGAAGAACCTCGGATACCGGAACCGCAAATACCAGATGAGGAAGAAACTGAAGAGCCATATATAACCGTAACACAGCATATACCGGGCAGTACTTATCCGATAGCCCCTCATCTACCAGGTGTACCGTACTTTGCGGTACCATATATTCCTGGGCCGCAACCAGAAGTTACACACACGGGATTTCCGCAAATACCACCACATTATCCACCTAGCTATCAAACTCCGCCCGGGTATCCGCAACCGCATCCCGGATACCCGCAACCGCCACCGGGATATCCGCAACCTCCACCGAGCTATCCGCAGCCACCGCAAGGCTATCCACAGACTCCGCCAGGCTACCCTCAATTACCACCTGGTTTTCCGATTCCGCCCGGATATCAGTTGCCACCTGGATTTGCATTACCGCCGGGGTACCCGCATTTACTACCCGGCTATCCGCAACTACCGCCAGGATATTCGCATTTTCCGGACGTGGTCACAGACTACAAACCACCTATCTTTGCACCACCAATCAACGACTCCGGAAATATCTATATCAGATATTTAACACATCCGCCTGAGATCACGATCCGGCCGAGGAACCTTCAAGTTCGAGCTAACAGCATCGCAGCGTTCTATTGCGCGGCACGAGGAGACCCGATACCTAACATACAGTGGCGCAAAAACGGAAAGAAAGTTTCCAACATGCAAACCCGCTACCAAGTATCGGGCATGGACGGAGCGGCCGGCCCCGGTGCCAACGGAGCTGTCCTTCGCATCGAACCAGTGCGGGCGCAACGCGACGACGCGACCTACGAGTGCGTTGCCGAGAACGGCGTTGGCGACGCTGTCACTGCCGTAGCTACGTTGACGGTGTTCGAAGTTGATAAAGTCCCGCCCGGTTTCCCGAGCATTTCGCCGCCCTCCACCATGATGGTCGTCGAGATTGGCCACACGGCTACCCTGCCCTGCCAAGCTACCGGGAACCCAACGCCCAAAATAAGATGGCTTCGGAACTCCTTGCCACTGGACGTCGCTTCGAATCCAAGATACGCTCTGCTCAACGATAAGATGCATGGCACACTGCAAATAGTGAAGAGTGAAGAGGATGACAATGGCAAATTTGAATGTATCGCGGAAAACTCGATTGGAACTGAATTCTCTAAGCCCACGGTTCTATACGTGAAAGTACGAAGAGTCGCACCCCAGTTTTCGATACCACCCCCTCCCCGCTCAGAAGTGATGCTCGGTGGAAACCTGACTTTGAAATGCGTTGCTTTCGGAGCACCGATGCCTACTGTTAAATGGAGGAAAGGATTAACGAAATGGTTGACCCCGGAGGATAATCCTCCTCTAGGGCTGAACAACCTTGAATTAAGAGACATCAGAGAATCTGCCAACTACACTTGCGAAGCAGCCAGCGTGCTTGGAGTCATTGAAGCCACAGCCGAAGTCAAAGTTCAATCATTACCTGGAGCCCCCACTGAAGTTAGACCTTCCGAAGTTACAGCGACCGCAGTTCGCCTGTCATGGACATATAACGGCCCAGAAGAACCCCAGTACTATGTCATACAGTACAAACCTAAAAACGCTCATCAGGCCTTCAGCGAGATATCTGGAGTGATCACCCAATACTACTCCGTTACGAATCTATCGCCTTACACTGAATACGAGATGTACGTCATTGCGGTCAACAACATCGGCAGGGGACCTCCGTCTTCACCGGCGGTCATCAGTACCGGAGAAACAGAGCCCGGTTCAGCGCCGAAGAATGTTCAAGTCCGTCCACTCAGCTCCAGCACGATGGTGATACAATGGGAAGAACCGGAGACGCCTAACGGTCAAGTCACCGGCTACAAGATATTTTACACTACGGATCCATCGCAACCTTTACAGTCTTGGCACTCTCATATGATGGACAACAGTCACTTGACAACGATAAGCGAGCTAACCCCACACACGGTGTACACGATAAGAGTGCAAGCGTATACATCCGTTGGACCCGGTCCGATATCTGCTCCAGTTCAAGTGAAAACCCAACAAGGAGTACCGTCGCAGCCATCGAACCTCGTTGCCACGGAAGCTGGTGAAACATCTGTGACTCTGTCGTGGAAACGACCAGCTCACGCCGGCGACAACATCGTCTCTTACGAACTCTATTGGAACGATACGTACGCTAAGGAGCATCATAAAAAACGCATCCCGATAACGGAGACATACACCCTGAACGGTCTGTATCCGAATACGTTGTACTACATCTGGCTAGCGGCGAGGTCTCAGCGAGGGGAAGGCGCCACCACACCCGCCATAGCCGTCAGAACCAAACAGTATGTGCCTGGTGAACCACAAGACGTCAAGGTGACAGCCATCAACTCAACCTCTATCCATGTTACGTGGAAGCCGCCACATGATAAAGATAAAAACGGAATCATCAGGGGCTATCATGTTCACGTCCAAGAAGTTAGAGAAGAAGGGAAAGGTCTTCTCAACGACCCCATGCGTTTCAATGTAATGGATGACACGACATTGGAACTGAACGTTTCTGGCCTCCAACCGGACACACGGTACAATGTTCAGGTTGCCGCGCTGACAAGGAAAGGAGACGGCGACCGGAGTCCACCAGTATCTGTCAAAACCCCTGGCGGAGTGCCAAACAGACCCACCGTTAGTCTAAAAATCCTGGAACGCGAACCAATAGTTTCTATCGAATTAGATTGGGCGAGACCTACACAGACATACGGAGACTTACTTGGATATCGATTACGATTCGGAATTAAAGATCAGCCGTTAGAGGAAATCAATTTCCCTGGTACCAAAGTGACGTCACATAGAATAAGTGATTTAGAACGAGGAGTTCAGTATGAGTTTAGAATAGCAGGAACAAATCAAATAGGCGTCGGACAAGAAACTATAAAGTACATGTTGACTCCAGAAGGTGCTCCTAAGGGACCTCCAACTAATGTTACATATCATTTCCAAACTCCCGATATCATAAGTATAACCTGGGAACCCCCTGTAAGAGCGGACAGAAGTGGCCAAATTAAGAAATATGACGTCCAATTTTATAAAAGAGGAGATCAGTCGTCATTATTAGAAAAAACCACTAACCAAACGAAGGCCGTATTCACGGGTCTGGAAGAGGACGCACATTACGTATTTAAGGTTCGTGCGTATACTGATCAGGGGCCTGGACCCTACAGCAAAGATATGACTGCTCATACCGAAAGAGATATCGGAAGAGCACCCATGTCCGTCAAAGCTGTCGCCACCTCAGAGTCAAGCGTCGAAGTATGGTGGGAAACATTCCGTTCCAGAAAGAAGATAATAGGCTATGTCTTATTTTATACTATGACGCCGGTTGAAGATTTGGACGAATGGCAACAAAAGAGTATACATGTAACACATTCGGCTGATTTGGAAAATCTGGAAACGTTTGCGGAGTATGCTATAGCAGTGGCTGCTAAAACAGCGGACGGATTGGGAAGGCTGTCGGAAAAGGTTACTGTTAAAGTTAAACCAGAAGAAGTGCCTTTACACCTAAGAGCTCAGGACGTGTCTACACATTCTATGACTCTGTCCTGGTCATCCCCGCTACGATTAAACCCTGTTAGTTATAAAATCTCGTACAATGCCATCAAAGAGTTCGTAGACTCGCTCGGTATGACACAGACTCAAGAGATACCTAGAAAAGAAATTATTGTTAAGCATAATAGAACATCATTTTCTATCAACGACTTGTCGCCTTTTACGACTTACAATGTAAACGTAAGCGCCATACCGAATGACGATTCGTATCGGCCGCCTAAAAAGATTACAGTGACGACGCAAATGGCCGCACCTAAGCCGATGGTCAAACCAGACTTCTATGGTGTTGTCGAAAACGAAATACTCGTAATTCTACCTCAAGCTTCCGAGGAATACGGACCTATCTCCCATTATTATTTAGTCGTAGTACCTGATGATAAGTTGCACAATCACAAGAATCCGGATCAGTTCCTAACAGACGACCTAATCAAGAATAACATGAGAACGGACGATGAAAACGCTCCCTACATTGCAGCCAAATTTTTACAGAGAAACATTTTGTATACCTTTCACCTCGGCAACGACGAACTGTACGAAGGATTTTTGAATAGAAAATTGAACCTGAACAAAAGGTATCGAGTGTTTGTAAGAGCAGTAGTAGACACACCTCAGAAACACTTGTATACATCAAGTCCATTTTCGGAATATCTGTCTTTGGATATGCGAGAAGCTCCTCCGGGTGAGGAACCTAGCAGACCAGATCCCAAGGATATTAATGGCGATCCTGAAATTCGAATAGAAGAGAACAGGAAAGAGGCGGGCATGGCGGCGGTCACCAGACCTTTGATGTCCGCCGATGTTGGTTTTGGTGCTCCATCTGACCCCGTGGAAATGAGACGATTAAACTTCCAGACACCCGCGATGATCTCTCATCCGCCTATTCCGATTTCTGAACTAGGCGAACACATTGATAGACTGAAAGCCAACGACAATATGAAATTCTCTCAAGAATATGAGAGTATCGAGCCAGGACAACAGTTTACTTGGGACCATTCTAACATGGAAGTTAACAAACCGAAGAATCGGTATGCTAATGTGATCGCGTACGACCACAGTCGAGTCATCCTTCAGCCCATCGATGGAATTCTAGGCAGTGATTACATTAATGCCAATTATTGCGACGGCTACCGCAAACATAACGCATACGTAGCTACTCAAGGGCCGCTGCAGGAAACTTTTGCGGATTTCTGGAGAATGTGTTGGGAGCTACGCACGTCCACGATTGTTATGATGACAAAATTGGAAGAGAGAACTAGAATAAAATGCGACCAATATTGGCCGAGCCGCGGCACTGAATCGTACGGCATGATGAGCGTTACCATTGCCGAAGTTCAAGAACTTTCGACTTATTCCATACGTACTTTCCAAGTATCTAGGAACGGATGCGCCGAACGTAGAGAAATCAAACAGCTACAGTTTACGGCTTGGCCGGATCACGGCGTTCCCGATCATCCTGCGCCCTTCCTCCAGTTTTTGAGACGCGTTCGTGCCTTGAATCCGCCCGAAGCCGGTCCGCTGGTCGTCCACTGTTCCGCCGGGGTGGGTCGTACGGGGTGCTTCATAGTCATTGACTCGATGCTTGAGAGAGCCCGACATGAGCGCACTGTCGATATATACGGGCACGTGACCTGTCTCCGCGCTCAACGTAACTACATGGTGCAAACCGAGGACCAATACATCTTCATTCACGACGCCTTACTGGAGGCGGTTATCTGCGGCGACACGGAAGTGCCGGCGCGCAATCTGCACGCTCACATCCAGAAGCTGATGCGAATCGACTCTATCGAGAACATAACGGGCATGGAATTAGAATTCAAGAAGCTGGCGAACATGAAGGCGGACTCCAGTAGGTTTGTCTCGGCCAGTTTGCCTTGCAACAAGCACAAGAACAGGCTAGTCCACATCTTGCCGTACGAGTCTAGTCGGGTCTGCCTGACGCCGCGCGATGGCTCCGATTACATCAACGCGTCGTTCGTTGACGGATACAGATACAGGGCGGCGTATATCGCCACGCAGGGCCCCCTACCGGACACCACCGACGACTTCTGGCGAATGCTTTGGGAGCACAACTCAACCATCATCGTGATGCTGACCAAACTGAAGGAAATGGGCCGGGAAAAATGTCACCAATATTGGCCGTCTGACCGCTCGGTGCGTTACCAGTGCTTCGTAGTGGATCCGATTGCCGAATACAACATGCCTCAATACATTTTGAGGGAATTTAAGGTCACGGATGCCCGGGACGGCGCCTCCAGGACGGTCAGACAGTTCCAGTTCACGGACTGGCCCGAACAAGGAGTGCCGAAAAGCGGAGAAGGCTTCATCGATTTCCTCGGACAAGTTCACAAGACCAAGGAACAATTCGGACAGGACGGACCTATAACTGTGCACTGCAGTGCGGGCGTCGGTCGCACGGGCGTGTTCATAACTCTGTCAACGGTGTTGGAGCGTATGCAGTATGAAGGCGTGGTGGATGTATTCCAGACGGTACGCACGCTCCGCACGCAGCGACCCGCCATCGTGCAGACTGAGGACCAGTACGAGTTCTGCTACCGCGCAGCCCTGGAGTATCTCGGCTCGTTCGATCACTACACCAACTGA
Protein
MYPENTTTVRARQKSFLYLTDEESEDTEPPSEVPELPEEPQVQETPEIPQAPDSSGIPETPSIPEEPRIPEPQIPDEEETEEPYITVTQHIPGSTYPIAPHLPGVPYFAVPYIPGPQPEVTHTGFPQIPPHYPPSYQTPPGYPQPHPGYPQPPPGYPQPPPSYPQPPQGYPQTPPGYPQLPPGFPIPPGYQLPPGFALPPGYPHLLPGYPQLPPGYSHFPDVVTDYKPPIFAPPINDSGNIYIRYLTHPPEITIRPRNLQVRANSIAAFYCAARGDPIPNIQWRKNGKKVSNMQTRYQVSGMDGAAGPGANGAVLRIEPVRAQRDDATYECVAENGVGDAVTAVATLTVFEVDKVPPGFPSISPPSTMMVVEIGHTATLPCQATGNPTPKIRWLRNSLPLDVASNPRYALLNDKMHGTLQIVKSEEDDNGKFECIAENSIGTEFSKPTVLYVKVRRVAPQFSIPPPPRSEVMLGGNLTLKCVAFGAPMPTVKWRKGLTKWLTPEDNPPLGLNNLELRDIRESANYTCEAASVLGVIEATAEVKVQSLPGAPTEVRPSEVTATAVRLSWTYNGPEEPQYYVIQYKPKNAHQAFSEISGVITQYYSVTNLSPYTEYEMYVIAVNNIGRGPPSSPAVISTGETEPGSAPKNVQVRPLSSSTMVIQWEEPETPNGQVTGYKIFYTTDPSQPLQSWHSHMMDNSHLTTISELTPHTVYTIRVQAYTSVGPGPISAPVQVKTQQGVPSQPSNLVATEAGETSVTLSWKRPAHAGDNIVSYELYWNDTYAKEHHKKRIPITETYTLNGLYPNTLYYIWLAARSQRGEGATTPAIAVRTKQYVPGEPQDVKVTAINSTSIHVTWKPPHDKDKNGIIRGYHVHVQEVREEGKGLLNDPMRFNVMDDTTLELNVSGLQPDTRYNVQVAALTRKGDGDRSPPVSVKTPGGVPNRPTVSLKILEREPIVSIELDWARPTQTYGDLLGYRLRFGIKDQPLEEINFPGTKVTSHRISDLERGVQYEFRIAGTNQIGVGQETIKYMLTPEGAPKGPPTNVTYHFQTPDIISITWEPPVRADRSGQIKKYDVQFYKRGDQSSLLEKTTNQTKAVFTGLEEDAHYVFKVRAYTDQGPGPYSKDMTAHTERDIGRAPMSVKAVATSESSVEVWWETFRSRKKIIGYVLFYTMTPVEDLDEWQQKSIHVTHSADLENLETFAEYAIAVAAKTADGLGRLSEKVTVKVKPEEVPLHLRAQDVSTHSMTLSWSSPLRLNPVSYKISYNAIKEFVDSLGMTQTQEIPRKEIIVKHNRTSFSINDLSPFTTYNVNVSAIPNDDSYRPPKKITVTTQMAAPKPMVKPDFYGVVENEILVILPQASEEYGPISHYYLVVVPDDKLHNHKNPDQFLTDDLIKNNMRTDDENAPYIAAKFLQRNILYTFHLGNDELYEGFLNRKLNLNKRYRVFVRAVVDTPQKHLYTSSPFSEYLSLDMREAPPGEEPSRPDPKDINGDPEIRIEENRKEAGMAAVTRPLMSADVGFGAPSDPVEMRRLNFQTPAMISHPPIPISELGEHIDRLKANDNMKFSQEYESIEPGQQFTWDHSNMEVNKPKNRYANVIAYDHSRVILQPIDGILGSDYINANYCDGYRKHNAYVATQGPLQETFADFWRMCWELRTSTIVMMTKLEERTRIKCDQYWPSRGTESYGMMSVTIAEVQELSTYSIRTFQVSRNGCAERREIKQLQFTAWPDHGVPDHPAPFLQFLRRVRALNPPEAGPLVVHCSAGVGRTGCFIVIDSMLERARHERTVDIYGHVTCLRAQRNYMVQTEDQYIFIHDALLEAVICGDTEVPARNLHAHIQKLMRIDSIENITGMELEFKKLANMKADSSRFVSASLPCNKHKNRLVHILPYESSRVCLTPRDGSDYINASFVDGYRYRAAYIATQGPLPDTTDDFWRMLWEHNSTIIVMLTKLKEMGREKCHQYWPSDRSVRYQCFVVDPIAEYNMPQYILREFKVTDARDGASRTVRQFQFTDWPEQGVPKSGEGFIDFLGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSTVLERMQYEGVVDVFQTVRTLRTQRPAIVQTEDQYEFCYRAALEYLGSFDHYTN

Summary

Description
Possible cell adhesion receptor (Probable). It possesses an intrinsic protein tyrosine phosphatase activity (PTPase) (PubMed:2554325). It controls motor axon guidance (PubMed:8598047). In the developing eye, has a role in normal axonal targeting of the R7 photoreceptor, where it negatively regulates bdl (PubMed:24174674). Inhibits bdl cell adhesion activity in vitro; this effect is independent of its PTPase function (PubMed:24174674).
Can bidirectionally induce pre- and post-synaptic differentiation of neurons by mediating interaction with IL1RAP and IL1RAPL1 trans-synaptically (PubMed:25908590). Involved in pre-synaptic differentiation through interaction with SLITRK2 (PubMed:25989451).
Catalytic Activity
H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate
Subunit
Interacts with PPFIA1, PPFIA2 and PPFIA3 (By similarity). Interacts (via extracellular domain) with SLITRK4 (via LRR 1 and 2 repeats) (PubMed:25989451). Interacts with SLITRK2; induces presynaptic differentiation (PubMed:25989451). Interacts (via the second immunoglobilin domain) with IL1RAPL1 (via the first immunoglobilin domain); induces pre- and postsynaptic differentiation of neurons and synapse formation. Isoform G, isoform H, isoform I, isoform J, and isoform K do not interact with IL1RAPL1 (PubMed:25908590, PubMed:21940441). Interacts (via the third immunoglobilin domain) with IL1RAP (via the first immunoglobilin domain); induces pre- and postsynaptic differentiation of neurons (PubMed:25908590).
Similarity
Belongs to the protein-tyrosine phosphatase family. Receptor class 2A subfamily.
Keywords
3D-structure   Cell adhesion   Complete proteome   Disulfide bond   Glycoprotein   Heparin-binding   Hydrolase   Immunoglobulin domain   Membrane   Neurogenesis   Phosphoprotein   Protein phosphatase   Receptor   Reference proteome   Repeat   Signal   Transmembrane   Transmembrane helix   Alternative splicing  
Feature
chain  Tyrosine-protein phosphatase Lar
splice variant  In isoform A and isoform B.
EC Number
3.1.3.48
EMBL
NWSH01002307    PCG68563.1    CH933807    KRG03743.1    KRG03744.1    CH940649    + More
KRF81056.1    KRF81059.1    CM000158    KRJ99186.1    KZ288204    PBC33179.1    CM002910    KMY91068.1    CH954179    KQS61874.1    KRJ99182.1    AE014134    AGB93132.1    CH379062    KRT05061.1    CH902620    KPU73547.1    KQS61870.1    AFH03768.1    KMY91071.1    KRT05066.1    AGB93130.1    KRJ99184.1    KPU73548.1    AGB93131.1    OUUW01000010    SPP85923.1    KMY91069.1    KMY91072.1    KQS61869.1    KPU73551.1    KRT05068.1    SPP85925.1    KQ435714    KOX79189.1    CP012523    ALC40272.1    KRG03745.1    EDW13409.2    KRG03746.1    EDW63355.2    EDV54619.1    KQS61871.1    KRG03747.1    M27700    U36857    U36849    U36850    U36851    U36852    U36853    U36854    U36855    U36856    AY051985    EDW90449.1    AAN11057.2    KRG03742.1    KRJ99187.1    KRF81057.1    KRF81058.1    KRF81064.1    KRF81063.1    KQS61873.1    KRJ99185.1    KQS61872.1    CH916372    EDV99394.1    KRJ99181.1    KRJ99183.1    AGB93129.1    KRF81060.1    KRF81061.1    KRF81062.1    KRF81065.1    KMY91066.1    CM000361    EDX05549.1    KMY91064.1    KMY91070.1    EDV31687.1    KPU73552.1    CH963857    EDW75971.2    KMY91065.1    KMY91067.1    KPU73545.1    EDY70741.1    CH479184    EDW37427.1    KPU73543.1    SPP85926.1    SPP85924.1    KRT05064.1    KRT05069.1    KRT05070.1    KPU73546.1    KPU73550.1    KPU73544.1    KPU73549.1    KRT05067.1    KRT05060.1    KRT05063.1    KRT05065.1    KRT05062.1    ADMH02000562    ETN65882.1    KK118240    KFM72534.1    AEMK02000004    AAEX03007837    KK500601    KFP09389.1    AJFE02082354    AJFE02082355    AJFE02082356    AJFE02082357    AJFE02082358    AJFE02082359    AJFE02082360    AJFE02082361    AJFE02082362    AJFE02082363    D13903    D13905    D13904    AF326559    AF326560    AL844848    AL845517    AL929181    Z23051    KL871841    KGL93593.1    AAGW02032701    AAGW02032702    AAGW02032703    AAGW02032704    AAGW02032705    AAGW02032706    AAGW02032707    AAGW02032708    AANG04001055   
Pfam
PF00041   fn3        + More
PF00102   Y_phosphatase
PF07679   I-set
Interpro
IPR013783   Ig-like_fold        + More
IPR003599   Ig_sub       
IPR000387   TYR_PHOSPHATASE_dom       
IPR003595   Tyr_Pase_cat       
IPR036116   FN3_sf       
IPR000242   PTPase_domain       
IPR007110   Ig-like_dom       
IPR003961   FN3_dom       
IPR036179   Ig-like_dom_sf       
IPR016130   Tyr_Pase_AS       
IPR003598   Ig_sub2       
IPR029021   Prot-tyrosine_phosphatase-like       
IPR013098   Ig_I-set       
SUPFAM
SSF52799   SSF52799        + More
SSF48726   SSF48726       
SSF49265   SSF49265       
Gene 3D
PDB
2FH7     E-value=0,     Score=2593

Ontologies

Topology

Subcellular location
Membrane  
Length:
2118
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03038
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00036
outside
1  -  2118
 
 

Population Genetic Test Statistics

Pi
23.507605
Theta
22.610697
Tajima's D
0.107801
CLR
1.108046
CSRT
0.405429728513574
Interpretation
Uncertain
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