Gene

KWMTBOMO06811

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(-):15601759-15603974      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.12

CDS

ATGGTAAAGTCTAGCTTGCGACCAACTAGGCAACAAATCTTGGAGCCCCCAGATAACTTCCAATTGGAAGTCAAAAACAGGTTTGACGTGTTGGAAACTGACTGCGACGTGGATAAGCGCACCAACGAAATGGTGAAAATTCTAAGAGAAGTGGGCAATAAATACTTTCAGCATAGAAGAAAAGGCCAAGAGACTAAACTCTCCAACGAGACCCTGCTATTGATGAAACAGCGAAGGGAAACTGCAGATGCTACTCCGTCAGATGGAAAAACTATAAACACTAAAATCAGAAAGCTGATTAGGCGTGACCTTCGCCAATTCAACACAATAAAGATTAAAGAGGCAATACAACAAAACAAAGGCACCAAAGTGTTTATACGGCAACAACAACTAGGCCGAAGCCATCTGACGAAGCTCAAAACTGCCGATGGAAGAATTGTTGAATCAAGATCAGAAGTCCTCACTGAAGTGGAGAGCTACTATCGTAGTCTCTATGCCTCACAGGCTCCCAAGCCCTTTGCCCACCCAGAGATTGATCACCGAGCCCCCTTAGTCCGCCACTATACGGAAGACATACCCGACGTCAGTATAGAGGAGATAAGGGCTGCTTTGGAACAGCTTACAAATAACAGAGCTACAGGGGATGACGGAATCAGTGCAGAATTGTTGAAGGCAAGTGGTACATCAGTTCTCAACCAATTATGCACAACGTTCGACACTGTCATTCAAAAAACTACTACACCGGAAGCCTGGAGCAAGGGTACTGTCATTCTTTTCTTTAAGAAGGGAGACCGTGCTCTGCTCAAGAACTACAGGCCTATTTCACTTCTTAGCCATATTTATAAGCTGTTCTCGAGAGTCCTTACAAATCGCTTGGCCTCTAGACTTGACGAGTTCCAACCTCCGGAGCAGGCTGGGTTTCGCAAAGGCTATAGTACGGTAGACCACATCCACACGCTGAGACAGGTTATTCAGAAGACTGAAGAATACAATCGTCCTCTGTGTCTCGCATTTGTGGACTACGAAAAAGCCTTCGACTCCGTCGAAACTTGGGCTGTTCTGGAATCCTTACAGCGATGCCTAGTCGATTATCGGTACGTTGAGGTGTTGAAGAGTTTATACAAAGCCGCCAAAATGACAGTCCAGATCCAAAACCAGCAGACAAACCCGATTGAGCTTCACAGAGGGGTGCGACAGGGTGACGTTATATCGCCGAAACTGTTCACTGCTGCTCTCGAGGATGTCTTCAAGACTCTGGACTGGAGTAAGCTCGGCATCAATGTCAATGGCGAGTATCTCTCACACCTCCGATTTGCAGACGATATCGTTATGATGGCAGAGTCGCTGGAGGATCTCAGCTGTATGCTGGGTGAGCTGAATGCCGCGTCACGACGTGTTGGTCTAGGAATGAATCTGGACAAAACTAAGGTCATGTTCAACGACCATATCATTCCTGGACCGGTAATAGTCGAATCCGCGGTACTCGAAGTTGTGTCTGAATACACTTATCTAGGCCAAATTATTCAGCTAGGCAGGGCCAACTTTGAGAAGGAAGCTGATAGGCGCATACAGTTGGGTTGGGCTGCGTATGGAAAACTCCGTCATATCTTGAACTCAGGAATCCCGCAATGCCTAAAAACAAAAGTCTTCAACGCTTGCGTGCTGCCGGTCATGACATATGGCGCCGAAACGTGGACATTGACCGTAGGTCTAGTCCGTAAGTTCAAAGTCGCTCAGCGTGCTATGGAAAGGTGTATGCTCGGAGTTTCTTTGATGGATCGACTTAGAAATGAGGAAATCCGTCAAAGAACCAAAGTAACCGACATAGCCCTAAAGATTAGCAAGCTGAAATGGCAATGGGCTGGACATACGTGTCGCAGAACCGATGGGCGATGGAGCAGACGTGTTCTGGACTGGAGACCGCGTACCGGTAAGCGCAGCGTTGGGCGTCCCCCTGCCCGTTGGACCGATGACTTGCGGCGATATGCTGGGAGAGATTGGATGCGGAAGGCGGAGGATCGTTCATTGTGGCGGACTATGGGAGAGGCCTACATCCAGCAGTGGATAGATACAGGCTGA

Protein

MVKSSLRPTRQQILEPPDNFQLEVKNRFDVLETDCDVDKRTNEMVKILREVGNKYFQHRRKGQETKLSNETLLLMKQRRETADATPSDGKTINTKIRKLIRRDLRQFNTIKIKEAIQQNKGTKVFIRQQQLGRSHLTKLKTADGRIVESRSEVLTEVESYYRSLYASQAPKPFAHPEIDHRAPLVRHYTEDIPDVSIEEIRAALEQLTNNRATGDDGISAELLKASGTSVLNQLCTTFDTVIQKTTTPEAWSKGTVILFFKKGDRALLKNYRPISLLSHIYKLFSRVLTNRLASRLDEFQPPEQAGFRKGYSTVDHIHTLRQVIQKTEEYNRPLCLAFVDYEKAFDSVETWAVLESLQRCLVDYRYVEVLKSLYKAAKMTVQIQNQQTNPIELHRGVRQGDVISPKLFTAALEDVFKTLDWSKLGINVNGEYLSHLRFADDIVMMAESLEDLSCMLGELNAASRRVGLGMNLDKTKVMFNDHIIPGPVIVESAVLEVVSEYTYLGQIIQLGRANFEKEADRRIQLGWAAYGKLRHILNSGIPQCLKTKVFNACVLPVMTYGAETWTLTVGLVRKFKVAQRAMERCMLGVSLMDRLRNEEIRQRTKVTDIALKISKLKWQWAGHTCRRTDGRWSRRVLDWRPRTGKRSVGRPPARWTDDLRRYAGRDWMRKAEDRSLWRTMGEAYIQQWIDTG

Uniprot

D7F166   D7F157   D7F160   D7F165   D7F164   D7F159   + More
D7F158   A0A3S2KX72   A0A3S2TAR4   A0A2G8JFM9   A0A2W1BLC9   W4YXJ0   A0A2G8K4F2   D7F179   A0A2W1BCS2   A0A2H1VS24   A0A2W1BZV1   D7F176   A0A2W1B5F8   A0A2W1BDX2   D7F177   A0A023EXV2   A0A0K0FAW8   A0A016S1D2   A0A069DX96   A0A023EWU8   A0A0P4VWD0   A0A016RXU5   A0A016RYK0   A0A016WPY4   A0A016WCB8   A0A016V7H3   A0A016VV56   A0A016ULU9   A0A016S403   A0A016U784   A0A016UWI5   A0A016UTS3   A0A016TIA8   D7F178   A0A016WEQ1   A0A2H2JFN0   A0A016W5P9   A0A016WA79   A0A016S795   A0A016V419   A0A016S5B2   A0A016VVN3   A0A016THC6   K7HC54   K7HC53   E3LN61   K7HKK6   E3NB36   A0A2H2JHK8   A0A016SSP6   A0A016SG46   A0A016W4R1   A0A016TK11   A0A2H2ITH9   A0A2H2JKX8   A0A2H2JKG1   A0A016UGM6   A0A016T7J7   A0A2H2IZ03   A0A016SGC3   A0A016TXK2   K7IG36   A0A016VCD9   A0A2G8L2C7   A0A016VEC1   A0A016SX67   A0A016T590   A0A2H2JCS8   A0A016S5A1   E3NC15   E3MKV4   K7IG35   A0A016VGM4   E3MH09   A0A016VN75   A0A016VBB9   A0A016WKT9   K7I2A1   K7I2A2   E3NGJ2   A0A016T5Z1   A0A016WVQ3   A0A016UEM0  

Pubmed

20470440    29023486    28756777    25474469    25730766    26334808    + More
27129103   

EMBL

FJ265551    ADI61819.1    FJ265542    ADI61810.1    FJ265545    ADI61813.1    + More
FJ265550    ADI61818.1    FJ265549    ADI61817.1    FJ265544    ADI61812.1    FJ265543    ADI61811.1    RSAL01002130    RVE40575.1    RSAL01002362    RVE40503.1    MRZV01002136    PIK34564.1    KZ149985    PZC75698.1    AAGJ04050748    MRZV01000899    PIK42833.1    FJ265564    ADI61832.1    KZ150485    PZC70710.1    ODYU01004088    SOQ43598.1    KZ149907    PZC78256.1    FJ265561    ADI61829.1    KZ150317    PZC71439.1    KZ150108    PZC73382.1    FJ265562    ADI61830.1    GBBI01004876    JAC13836.1    JARK01001655    EYB84321.1    GBGD01000453    JAC88436.1    GBBI01004877    JAC13835.1    GDKW01001596    JAI54999.1    JARK01001677    EYB83168.1    EYB83167.1    JARK01000173    EYC41342.1    JARK01000388    EYC37469.1    JARK01001351    EYC23395.1    JARK01001340    EYC31295.1    JARK01001370    EYC16150.1    JARK01001639    EYB85201.1    JARK01001389    EYC11015.1    JARK01001362    EYC18843.1    EYC18844.1    JARK01001434    EYC02684.1    FJ265563    ADI61831.1    JARK01000347    EYC38051.1    JARK01000732    EYC35149.1    JARK01000460    EYC36749.1    JARK01001621    EYB86109.1    JARK01001354    EYC21986.1    JARK01001626    EYB85833.1    EYC30828.1    JARK01001438    EYC02111.1    DS268411    EFP03057.1    DS268581    EFO91764.1    JARK01001517    EYB93530.1    JARK01001565    EYB89683.1    JARK01001337    EYC34625.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001378    EYC13977.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001568    EYB89432.1    JARK01001406    EYC07496.1    JARK01001348    EYC25050.1    MRZV01000249    PIK54411.1    EYC25048.1    JARK01001500    JARK01001343    EYB95040.1    EYC28825.1    JARK01001473    EYB97806.1    JARK01001630    EYB85641.1    DS268591    EFO92565.1    DS268453    EFP04265.1    JARK01001346    EYC26784.1    DS268444    EFP01729.1    JARK01001344    EYC28218.1    JARK01001349    EYC24735.1    JARK01000248    EYC39628.1    DS268655    EFO97114.1    JARK01001470    JARK01000204    EYB98082.1    EYC40602.1    JARK01000077    EYC43894.1    JARK01001380    EYC13322.1   

Proteomes

UP000283053    UP000230750    UP000007110    UP000035680    UP000024635    UP000005237    + More
UP000008281   

PRIDE

D7F166    D7F157    D7F160    D7F165    D7F164    D7F159    + More
D7F158    D7F179    D7F176    D7F177    D7F178   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01826   TIL
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR029052   Metallo-depent_PP-like       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       

Gene 3D

3.60.10.10     3.60.21.10    

ProteinModelPortal

D7F166   D7F157   D7F160   D7F165   D7F164   D7F159   + More
D7F158   A0A3S2KX72   A0A3S2TAR4   A0A2G8JFM9   A0A2W1BLC9   W4YXJ0   A0A2G8K4F2   D7F179   A0A2W1BCS2   A0A2H1VS24   A0A2W1BZV1   D7F176   A0A2W1B5F8   A0A2W1BDX2   D7F177   A0A023EXV2   A0A0K0FAW8   A0A016S1D2   A0A069DX96   A0A023EWU8   A0A0P4VWD0   A0A016RXU5   A0A016RYK0   A0A016WPY4   A0A016WCB8   A0A016V7H3   A0A016VV56   A0A016ULU9   A0A016S403   A0A016U784   A0A016UWI5   A0A016UTS3   A0A016TIA8   D7F178   A0A016WEQ1   A0A2H2JFN0   A0A016W5P9   A0A016WA79   A0A016S795   A0A016V419   A0A016S5B2   A0A016VVN3   A0A016THC6   K7HC54   K7HC53   E3LN61   K7HKK6   E3NB36   A0A2H2JHK8   A0A016SSP6   A0A016SG46   A0A016W4R1   A0A016TK11   A0A2H2ITH9   A0A2H2JKX8   A0A2H2JKG1   A0A016UGM6   A0A016T7J7   A0A2H2IZ03   A0A016SGC3   A0A016TXK2   K7IG36   A0A016VCD9   A0A2G8L2C7   A0A016VEC1   A0A016SX67   A0A016T590   A0A2H2JCS8   A0A016S5A1   E3NC15   E3MKV4   K7IG35   A0A016VGM4   E3MH09   A0A016VN75   A0A016VBB9   A0A016WKT9   K7I2A1   K7I2A2   E3NGJ2   A0A016T5Z1   A0A016WVQ3   A0A016UEM0  

PDB

6AR3     E-value=0.0138876,     Score=93

KEGG

101737796    no KO assigned | (RefSeq) craniofacial development protein 2-like

GO

GO:0003964   GO:0004519  

Length:

692

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.26183

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00074

outside

1  -  692

 

 

Pi

3.43189

Theta

15.002992

Tajima's D

-1.399399

CLR

27.703456

CSRT

0.0709964501774911

Interpretation

Uncertain