Gene

KWMTBOMO06810

Pre Gene Modal

BGIBMGA012104

Annotation

blue_opsin_[Mamestra_brassicae]

Location

Bomo_Chr11(-):15535956-15536964      View in EpiBrowser

Full name

Opsin-3      

Alternative Name

Rhodopsin 3, short-wavelength
Rhodopsin P450

Location in the cell

PlasmaMembrane   Reliability : 4.386

CDS

ATGTTTGTGATTAACTTGGCTATATTCGATCTGATGATGATGCTGGAGATGCCTCTGCTGATCATCAATTCATTCTACCAGCGTCTCGTGGGATACCAGTTGGGCTGTGACATATACGCCGTTTTAGGTTCCCTGTCTGGAATCGGAGGGGCCATCACAAATGCGGTTATCGCATTCGATAGATACAAGACTATCTCCTGTCCATTGGACGGTAGAATCAATAAGGTGCAAGCATCTCTTCTTATAGCCTTCACGTGGTTCTGGGCATTACCATTCACCATTCTACCAGCTTTCAGGATATGGGGACGATATGTTCCGGGTAAGTAA

Protein

MFVINLAIFDLMMMLEMPLLIINSFYQRLVGYQLGCDIYAVLGSLSGIGGAITNAVIAFDRYKTISCPLDGRINKVQASLLIAFTWFWALPFTILPAFRIWGRYVPGK

Description

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.

Similarity

Belongs to the G-protein coupled receptor 1 family.
Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.

Keywords

Chromophore   Disulfide bond   G-protein coupled receptor   Glycoprotein   Membrane   Photoreceptor protein   Receptor   Retinal protein   Sensory transduction   Transducer   Transmembrane   Transmembrane helix   Vision  

Feature

chain  Opsin-3

Uniprot

H9JRE4   A0A2A4IV32   V5L904   A0A2H1WCR8   Q05EC4   V5L9G3   + More
V5L9C0   U3LP66   V5L9C7   V5L8Z9   E6Y422   V5L9C5   A0A068PU91   O96107   A0A068PT78   A0A068PT74   A0A2S3SGK1   A0A068PT82   A0A068PU94   V5LAI3   A0A194R3H5   V5L9F9   V5L8P2   C4MEC2   V5L8Z5   A0A1Y0AYB1   E2DZM3   A0A1Y0AXY1   A0A1Y0AXY0   Q05EC6   G9B4U0   Q9UAM9   A0A194QAT3   Q9NL86   A0A1Y0AYC2   A0A1Y0AXZ7   E2DZM7   A0A1Y0AYK5   A0A1Y0AYH0   A0A1Y0AY94   A0A068PU88   G9B4U1   E2DZM8   A0A068PU84   Q7Z1L5   E2DZM2   A0A1Y0AYF8   A0A1Y0AY65   Q1JQF0   A0A1Y0AYD4   A0A1Y0AY52   A0A1Y0AY86   A0A1Y0AY37   E2DZN1   A0A1Y0AYJ4   A0A1Y0AY42   E2DZM1   A0A068PW27   E2DZN0   A0A068PU86   E2DZM9   A0A1Y0AY60   E2DZM6   A0A1Y0AXV8   A0A1Y0AYA4   A0A1Y0AYA9   A0A1Y0AYA1   E2DZM5   Q05EC7   Q05EC8   A0A1Y0AXW8   A0A1Y0AXX2   V5L8P5   A0A1Y0AY19   E2DZM4   C4MEC3   K7ZQ87   E1CG98   K7ZQ88   K7ZN61   E2DZM0   Q53AD1   K7ZRY9   A0A1Y0AY73   K7ZK36   A0A212ET15   M1VEF3   M1VRP9   C4MEC5   C4LS46   A0A1Y0AYI1   M1VKP7   Q00LM4   C4MEC1   Q401Q0   M1VPI6   G9B4T9   M1VKQ0   C4LS48   E2DZL9  

Pubmed

19121390    24205129    16888057    9343857    12939366    29358930    + More
26354079    28505307    20478921    9484709    10948267    12619069    16651559    21075944    15882645    22118469    15976082   

EMBL

BABH01016294    NWSH01006229    PCG63581.1    KF539436    AHA48180.1    ODYU01007780    + More
SOQ50837.1    AY918902    AAY16535.2    KF539434    AHA48178.1    KF539427    AHA48171.1    JX644013    KF539433    AGH28029.1    AHA48177.1    KF539437    AHA48181.1    KF539431    AHA48175.1    EU358778    ABY84502.1    KF539432    RSAL01000045    AHA48176.1    RVE50611.1    AB725227    BAP11284.1    AD001674    AAD11966.1    AB725198    BAP11255.1    AB725193    BAP11250.1    PDGJ01000159    POC56834.1    AB725203    BAP11260.1    AB725232    BAP11289.1    KF539428    AHA48172.1    KQ460779    KPJ12358.1    KF539429    AHA48173.1    KF539430    AHA48174.1    EU358777    ABY84501.1    KF539426    AHA48170.1    MF035654    ART30038.1    GU324684    ADN96748.1    MF035508    ART29893.1    MF035512    ART29897.1    AY918897    AAY16530.1    HM366557    AEG80173.1    AF077192    AAD34223.1    KQ459252    KPJ02105.1    AB028217    BAA93469.1    MF035650    MF035658    MF035662    ART30034.1    ART30042.1    ART30046.1    MF035530    MF035534    MF035537    MF035540    ART29915.1    ART29919.1    ART29922.1    ART29925.1    GU324688    ADN96752.1    MF035716    ART30100.1    MF035713    ART30097.1    MF035631    MF035634    ART30015.1    ART30018.1    AB725217    BAP11274.1    HM366558    AEG80174.1    GU324689    ADN96753.1    AB725207    BAP11264.1    AF414075    AAP49026.2    GU324683    MF035516    MF035519    MF035522    MF035526    ADN96747.1    ART29901.1    ART29904.1    ART29907.1    ART29911.1    MF035692    MF035695    MF035699    MF035702    MF035709    ART30076.1    ART30079.1    ART30083.1    ART30086.1    ART30093.1    MF035575    ART29960.1    AY918906    AAY16539.1    MF035666    MF035669    MF035673    MF035677    ART30050.1    ART30053.1    ART30057.1    ART30061.1    MF035582    MF035586    ART29967.1    ART29971.1    MF035617    MF035621    MF035624    MF035627    ART30001.1    ART30005.1    ART30008.1    ART30011.1    MF035568    MF035572    ART29953.1    ART29957.1    GU324692    MF035681    MF035684    ADN96756.1    ART30065.1    ART30068.1    MF035688    MF035705    ART30072.1    ART30089.1    MF035578    ART29963.1    GU324682    ADN96746.1    AB725221    BAP11278.1    GU324691    ADN96755.1    AB725212    BAP11269.1    GU324690    ADN96754.1    MF035593    MF035597    MF035601    ART29978.1    ART29982.1    ART29986.1    GU324687    MF035590    ADN96751.1    ART29975.1    MF035496    MF035499    ART29881.1    ART29884.1    MF035605    ART29989.1    MF035647    ART30031.1    MF035638    MF035641    MF035644    ART30022.1    ART30025.1    ART30028.1    GU324686    ADN96750.1    AY918894    AAY16527.1    AY918893    AAY16526.1    MF035502    ART29887.1    MF035505    ART29890.1    KF539435    AHA48179.1    MF035544    MF035548    MF035552    MF035556    MF035560    MF035564    ART29929.1    ART29933.1    ART29937.1    ART29941.1    ART29945.1    ART29949.1    GU324685    ADN96749.1    EU358779    ABY84503.1    AB721368    BAM66999.1    AB540940    BAJ22052.1    AB721373    BAM67004.1    AB721364    BAM66995.1    GU324681    ADN96745.1    AY605544    AAU07977.1    AB721376    BAM67007.1    MF035609    MF035613    ART29993.1    ART29997.1    AB721365    BAM66996.1    AGBW02012669    OWR44619.1    AB721390    BAM95300.1    AB721388    BAM95298.1    EU358781    ABY84505.1    DQ517943    ABF66138.1    MF035720    ART30104.1    AB721384    BAM95294.1    DQ402498    ABD64148.1    EU358776    ABY84500.1    AB208675    BAE19946.1    AB721387    BAM95297.1    HM366556    AEG80172.1    AB721389    BAM95299.1    DQ517945    ABF66140.1    GU324680    ADN96744.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000237283    UP000053240    UP000053268    + More
UP000007151   

PRIDE

H9JRE4   

Pfam

PF00001   7tm_1

Interpro

IPR000276   GPCR_Rhodpsn        + More
IPR017452   GPCR_Rhodpsn_7TM       
IPR000856   Opsin_RH3/RH4       
IPR027430   Retinal_BS       
IPR001760   Opsin       

ProteinModelPortal

H9JRE4   A0A2A4IV32   V5L904   A0A2H1WCR8   Q05EC4   V5L9G3   + More
V5L9C0   U3LP66   V5L9C7   V5L8Z9   E6Y422   V5L9C5   A0A068PU91   O96107   A0A068PT78   A0A068PT74   A0A2S3SGK1   A0A068PT82   A0A068PU94   V5LAI3   A0A194R3H5   V5L9F9   V5L8P2   C4MEC2   V5L8Z5   A0A1Y0AYB1   E2DZM3   A0A1Y0AXY1   A0A1Y0AXY0   Q05EC6   G9B4U0   Q9UAM9   A0A194QAT3   Q9NL86   A0A1Y0AYC2   A0A1Y0AXZ7   E2DZM7   A0A1Y0AYK5   A0A1Y0AYH0   A0A1Y0AY94   A0A068PU88   G9B4U1   E2DZM8   A0A068PU84   Q7Z1L5   E2DZM2   A0A1Y0AYF8   A0A1Y0AY65   Q1JQF0   A0A1Y0AYD4   A0A1Y0AY52   A0A1Y0AY86   A0A1Y0AY37   E2DZN1   A0A1Y0AYJ4   A0A1Y0AY42   E2DZM1   A0A068PW27   E2DZN0   A0A068PU86   E2DZM9   A0A1Y0AY60   E2DZM6   A0A1Y0AXV8   A0A1Y0AYA4   A0A1Y0AYA9   A0A1Y0AYA1   E2DZM5   Q05EC7   Q05EC8   A0A1Y0AXW8   A0A1Y0AXX2   V5L8P5   A0A1Y0AY19   E2DZM4   C4MEC3   K7ZQ87   E1CG98   K7ZQ88   K7ZN61   E2DZM0   Q53AD1   K7ZRY9   A0A1Y0AY73   K7ZK36   A0A212ET15   M1VEF3   M1VRP9   C4MEC5   C4LS46   A0A1Y0AYI1   M1VKP7   Q00LM4   C4MEC1   Q401Q0   M1VPI6   G9B4T9   M1VKQ0   C4LS48   E2DZL9  

PDB

2ZIY     E-value=6.84415e-07,     Score=120

KEGG

101742129    K04255 r-opsin | (RefSeq) opsin-3

GO

GO:0016021   GO:0007601   GO:0007602   GO:0004930   GO:0009881   GO:0018298   GO:0007186   GO:0006355   GO:0043565   GO:0016567   GO:0016020   GO:0005634   GO:0006260  

Subcellular location

Membrane  

Length:

108

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

65.68852

Exp number, first 60 AAs:

43.01628

Total prob of N-in:

0.78792

POSSIBLE N-term signal

sequence

inside

1  -  1

TMhelix

2  -  22

outside

23  -  36

TMhelix

37  -  59

inside

60  -  79

TMhelix

80  -  102

outside

103  -  108

 

 

Pi

35.072834

Theta

23.300488

Tajima's D

1.463915

CLR

0.272044

CSRT

0.785960701964902

Interpretation

Uncertain