Gene

KWMTBOMO06805  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012107

Annotation

THO_complex_subunit_1_[Papilio_xuthus]

Location

Bomo_Chr11(-):15482553-15498884      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.747

CDS

ATGTCGAGCAAACCAGGATTCGAAGAACTCCGCACGAAATACAAAGATGTACTTTCTAAAGCCTTTGCAACGAACAACATTGACCTCATCGATTCTTTTTCCAAAAACACTGACGAAACTGACAGAAAAGCAGCTATGGACCAAGCATTTAGGGATAAGCTACTTGAATTACTTACTGAGGATCATAACACTCTTGAAAATTTTGTATCGTTCTGCATAGAATCATGCAGGCGACTTATGGTTACGCCAACAATGCCTGTTGTATTACTTGGCGATATCTTTGACGCCCTCACACTAAATAAATGTGAACAATTATTCTCATACATTGAAAAAGGTGTCAGTATATGGAAGGAAGAACTATTTTTCGTGGCATGCAAAAATAATTTATTGAGAATGTGTAATGATTTATTAAGAAGACTTTCTCGATCTCAAAATACAGTTTTCTGTGGACGTATTCTACTTTTTTTGGCAAAATTCTTTCCATTCTCTGAACGCTCCGGTCTTAATATAGTCTCTGAATTCAATTTAGAAAATATAACGGAATTTGGTGTTGATAATTCAAGTACACTGAAAGATGCTTTGGAAGAAGAAATGGTTATTGATAATGAAAAACATAAACTGACTATAGATTACAATTTATACTGTAGATTCTGGAGTTTGCAAGAATTCTTCAGAAATCCTAATACTTGTTACAATAAACTCCAGTGGAAGACCTTTGTTGCACACTCTGGTAGTGTATTGTCCGCATTCTCATCCTACAAGCTAGAGACAGTTGAGCTGCAGAAATCTAAAATGAATCGATTGAAGCCATTGACTGACGTGGAAATGCAGGGTCAAGGCAAAGAGCAGCATTACTTTGCAAAATTTCTAACCAATCAGAAATTGTTAGAGTTGCAATTATCAGATTCGAACTTCAGAAGATGCGTCCTCATACAGTTTCTAATACTGTTTCAGTATCTGATGTCAACTGTTAAGTTCAAAACAGAAGCGCAGGAACTAAAATCTGACCAGTCTGATTGGATTAAAGATACAACCTCTCAGATTTATCGTTTGCTCGGTGAGACTCCACCGAATGGGAAGAAATTTGCGGAATGCGTTAAAAGCATACTAAAGCGAGAAGAACATTGGAACAACTGGAAAAATGATGGGTGTCCAGAATTTCAAAAACCCAAGCCACCGACACAATTGGACACCCCTGAAGATGTTAAGAAATCACGCAAAAGGCGTCGTCCGGTCGGCGATATTGTTAAGGAATACGAAGGACAGAAGAAATCCTATATGGGAAACAATGAGTTGACGAAACTCTGGAATCTGTGTCCGGATAATTTAGCGGCCTGTCGCACGAAGGAACGCGATTTCATGCCTTCGTTGGAGTCGTACATATCGAGCGCTTGTGACGAGTCGGGGCGGCGGCGCACGGCGGAGGGGGGTTGGGGGTGGCGCGCGCTGCGGCTCCTGGCGCGACGCTCGCCGCACTTCTTCGTGCAAACCAACAACCCTATAGGACGTCTCCCGGACTACCTCGATGCTATGGTCCATCGCATCACGAACGAGATGGCCGCCAACGCTGCGGCCGCCACCACCGAGCAGTCGCCGAAATCCGACGACAAGGCCAACAAGCCGGATGTGACCGAGGAGGAAATTAGTGAAGAACAAATGGAGGCTGATCTCATAAAAGAAGGCGACGCGAATGATATTGAACAGGTGCCCGACTCTACTCACGTCGGCGACGACGACTACGAGAAGTCGTCCAGGTCCCGCGTCACGATGATCACGCCCGCCCAGCTGGACGCGGTATCGGCCCAGCTCTCGGACTGGAAGACGCTGGCCGTGAAGCTCGGCTACAAGCCGGACGAGATCCAGTACTTCGAGACGGAAAACGCAACGGACGTCACGCGAGCCAAGAACATGCTTCAGCTCTGGTTCGACGACGACGAAGACGCGTCGGTCGAGAACCTCCTCTACACTATGGAGGGTCTGAAGATGACCGAGGCCTGCGAGGCGCTCAGACGAGTTATTTGA

Protein

MSSKPGFEELRTKYKDVLSKAFATNNIDLIDSFSKNTDETDRKAAMDQAFRDKLLELLTEDHNTLENFVSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQLFSYIEKGVSIWKEELFFVACKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENITEFGVDNSSTLKDALEEEMVIDNEKHKLTIDYNLYCRFWSLQEFFRNPNTCYNKLQWKTFVAHSGSVLSAFSSYKLETVELQKSKMNRLKPLTDVEMQGQGKEQHYFAKFLTNQKLLELQLSDSNFRRCVLIQFLILFQYLMSTVKFKTEAQELKSDQSDWIKDTTSQIYRLLGETPPNGKKFAECVKSILKREEHWNNWKNDGCPEFQKPKPPTQLDTPEDVKKSRKRRRPVGDIVKEYEGQKKSYMGNNELTKLWNLCPDNLAACRTKERDFMPSLESYISSACDESGRRRTAEGGWGWRALRLLARRSPHFFVQTNNPIGRLPDYLDAMVHRITNEMAANAAAATTEQSPKSDDKANKPDVTEEEISEEQMEADLIKEGDANDIEQVPDSTHVGDDDYEKSSRSRVTMITPAQLDAVSAQLSDWKTLAVKLGYKPDEIQYFETENATDVTRAKNMLQLWFDDDEDASVENLLYTMEGLKMTEACEALRRVI

Uniprot

H9JRE7   A0A2H1WM04   A0A194Q9D2   A0A3S2NWG7   A0A194R543   A0A2A4JXE8   + More
E9IQA4   A0A067RKL8   A0A088A7D4   A0A2J7RQX8   A0A0L7QUP7   A0A195BPU1   A0A154PRQ1   A0A0J7NZJ8   A0A195CWM9   F4X518   A0A151WYJ9   A0A2A3EB56   A0A310SEE7   E2ANQ3   A0A195DPJ3   A0A1W4WQ11   A0A195EYR7   E2B554   A0A158P2X1   A0A026WG44   A0A3L8DFV4   A0A1B0CCR7   A0A336M1X6   A0A1S4F250   A0A182YF18   A0A0M9A0A2   A0A1B0DDR4   A0A182NG63   A0A336KG73   Q17HT6   A0A0T6BD55   A0A182T6C0   A0A182JG52   A0A182QHV0   A0A182R3P9   A0A182TDI5   A0A182H6U2   A0A182K479   A0A182L7N9   A0A182UMF8   K7ISJ6   D6WX23   A0A182I826   A0A182MRI3   Q7QH59   A0A2P8Y2N2   A0A1I8JW94   A0A182VX40   A0A232FHI9   A0A182FQ83   A0A182PNK1   A0A2M4AGE0   A0A1B6EI84   A0A2M4AGF8   A0A0M8ZX54   W5JFR3   A0A1B6IAJ6   A0A1Y1MI33   A0A084VER7   A0A1I8NGH7   A0A1I8PR36   B0WA57   U4UCW0   N6UGB5   A0A2J7RQW9   A0A0L0CES3   B4JU04   T1PCA5   A0A034VHD5   A0A0K8UTJ7   B4LXR8   A0A0P5S7T9   A0A1B6CXE8   A0A1B0FAL1   A0A1A9Y8L4   A0A1A9VLK4   A0A1B0BPM3   A0A0P6G8W1   A0A240SX73   A0A0P5DLX7   A0A0N8BK75   A0A0P6EVF8   A0A0P5U6Y0   A0A0P5VPQ1   A0A1A9X2K4   A0A0P4Z9Y4   A0A0N8EN76   A0A0P5A5H4   A0A0P5NQP9   A0A1B6JPT5   A0A0P5V3Q0   A0A0P5R177  

Pubmed

19121390    26354079    21282665    24845553    21719571    20798317    + More
21347285    24508170    30249741    25244985    17510324    26483478    20966253    20075255    18362917    19820115    12364791    14747013    17210077    29403074    28648823    20920257    23761445    28004739    24438588    25315136    23537049    26108605    17994087    25348373    18057021   

EMBL

BABH01016296    BABH01016297    ODYU01009489    SOQ53962.1    KQ459252    KPJ02108.1    + More
RSAL01000045    RVE50609.1    KQ460779    KPJ12360.1    NWSH01000397    PCG76691.1    GL764688    EFZ17246.1    KK852621    KDR20035.1    NEVH01000613    PNF43227.1    KQ414734    KOC62348.1    KQ976432    KYM87514.1    KQ435012    KZC13790.1    LBMM01000669    KMQ97825.1    KQ977185    KYN05086.1    GL888680    EGI58475.1    KQ982649    KYQ52964.1    KZ288296    PBC28955.1    KQ770367    OAD52665.1    GL441295    EFN64939.1    KQ980713    KYN14404.1    KQ981905    KYN33440.1    GL445712    EFN89189.1    ADTU01007640    KK107231    EZA55022.1    QOIP01000009    RLU19053.1    AJWK01007043    UFQT01000289    SSX22833.1    KQ435782    KOX74745.1    AJVK01032172    AJVK01032173    UFQS01000316    UFQT01000316    SSX02778.1    SSX23149.1    CH477245    EAT46256.1    LJIG01001676    KRT85264.1    AXCN02001190    JXUM01027326    KQ560786    KXJ80892.1    KQ971361    EFA08780.1    APCN01002609    AXCM01006183    AAAB01008817    EAA05359.4    PYGN01001007    PSN38522.1    NNAY01000206    OXU30033.1    GGFK01006518    MBW39839.1    GECZ01032136    JAS37633.1    GGFK01006543    MBW39864.1    KQ435811    KOX72920.1    ADMH02001627    ETN61725.1    GECU01034797    GECU01023769    JAS72909.1    JAS83937.1    GEZM01030794    GEZM01030793    GEZM01030792    GEZM01030791    GEZM01030790    GEZM01030789    JAV85323.1    ATLV01012288    KE524778    KFB36461.1    DS231869    EDS40886.1    KB632061    ERL88421.1    APGK01036278    KB740939    ENN77692.1    PNF43229.1    JRES01000501    KNC30755.1    CH916374    EDV91583.1    KA646319    AFP60948.1    GAKP01017028    GAKP01017026    GAKP01017024    JAC41924.1    GDHF01022307    JAI30007.1    CH940650    EDW67877.1    KRF83547.1    GDIQ01095527    JAL56199.1    GEDC01019164    GEDC01001624    JAS18134.1    JAS35674.1    CCAG010010971    JXJN01018092    GDIQ01036919    JAN57818.1    GDIP01154232    JAJ69170.1    GDIQ01169659    JAK82066.1    GDIQ01070303    JAN24434.1    GDIP01134544    GDIP01118982    GDIP01102686    LRGB01001801    JAL84732.1    KZS10424.1    GDIP01097190    JAM06525.1    GDIP01216267    JAJ07135.1    GDIQ01010260    JAN84477.1    GDIP01203783    JAJ19619.1    GDIQ01145730    JAL05996.1    GECU01006813    JAT00894.1    GDIP01120987    JAL82727.1    GDIQ01106936    JAL44790.1   

Proteomes

UP000005204    UP000053268    UP000283053    UP000053240    UP000218220    UP000027135    + More
UP000005203    UP000235965    UP000053825    UP000078540    UP000076502    UP000036403    UP000078542    UP000007755    UP000075809    UP000242457    UP000000311    UP000078492    UP000192223    UP000078541    UP000008237    UP000005205    UP000053097    UP000279307    UP000092461    UP000076408    UP000053105    UP000092462    UP000075884    UP000008820    UP000075901    UP000075880    UP000075886    UP000075900    UP000075902    UP000069940    UP000249989    UP000075881    UP000075882    UP000075903    UP000002358    UP000007266    UP000075840    UP000075883    UP000007062    UP000245037    UP000076407    UP000075920    UP000215335    UP000069272    UP000075885    UP000000673    UP000030765    UP000095301    UP000095300    UP000002320    UP000030742    UP000019118    UP000037069    UP000001070    UP000008792    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000076858    UP000091820   

PRIDE

H9JRE7   

Pfam

PF00531   Death        + More
PF11957   efThoc1

Interpro

IPR011029   DEATH-like_dom_sf        + More
IPR000488   Death_domain       
IPR021861   THO_THOC1       

SUPFAM

SSF47986   SSF47986       

ProteinModelPortal

H9JRE7   A0A2H1WM04   A0A194Q9D2   A0A3S2NWG7   A0A194R543   A0A2A4JXE8   + More
E9IQA4   A0A067RKL8   A0A088A7D4   A0A2J7RQX8   A0A0L7QUP7   A0A195BPU1   A0A154PRQ1   A0A0J7NZJ8   A0A195CWM9   F4X518   A0A151WYJ9   A0A2A3EB56   A0A310SEE7   E2ANQ3   A0A195DPJ3   A0A1W4WQ11   A0A195EYR7   E2B554   A0A158P2X1   A0A026WG44   A0A3L8DFV4   A0A1B0CCR7   A0A336M1X6   A0A1S4F250   A0A182YF18   A0A0M9A0A2   A0A1B0DDR4   A0A182NG63   A0A336KG73   Q17HT6   A0A0T6BD55   A0A182T6C0   A0A182JG52   A0A182QHV0   A0A182R3P9   A0A182TDI5   A0A182H6U2   A0A182K479   A0A182L7N9   A0A182UMF8   K7ISJ6   D6WX23   A0A182I826   A0A182MRI3   Q7QH59   A0A2P8Y2N2   A0A1I8JW94   A0A182VX40   A0A232FHI9   A0A182FQ83   A0A182PNK1   A0A2M4AGE0   A0A1B6EI84   A0A2M4AGF8   A0A0M8ZX54   W5JFR3   A0A1B6IAJ6   A0A1Y1MI33   A0A084VER7   A0A1I8NGH7   A0A1I8PR36   B0WA57   U4UCW0   N6UGB5   A0A2J7RQW9   A0A0L0CES3   B4JU04   T1PCA5   A0A034VHD5   A0A0K8UTJ7   B4LXR8   A0A0P5S7T9   A0A1B6CXE8   A0A1B0FAL1   A0A1A9Y8L4   A0A1A9VLK4   A0A1B0BPM3   A0A0P6G8W1   A0A240SX73   A0A0P5DLX7   A0A0N8BK75   A0A0P6EVF8   A0A0P5U6Y0   A0A0P5VPQ1   A0A1A9X2K4   A0A0P4Z9Y4   A0A0N8EN76   A0A0P5A5H4   A0A0P5NQP9   A0A1B6JPT5   A0A0P5V3Q0   A0A0P5R177  

KEGG

101742757    K12878 THO complex subunit 1 | (RefSeq) THO complex subunit 1

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)
03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0007165   GO:0000347   GO:0032784   GO:0006406   GO:0000445   GO:0031990   GO:0003746   GO:0005515   GO:0009452   GO:0004930   GO:0006355   GO:0043565   GO:0016567   GO:0016020   GO:0005634   GO:0006260  

PANTHER

PTHR13265  

Length:

673

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01764

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00080

outside

1  -  673

 

 

Pi

16.724903

Theta

17.411048

Tajima's D

0

CLR

14.282458

CSRT

0.370031498425079

Interpretation

Uncertain