Gene

KWMTBOMO06804

Annotation

reverse_transcriptase_[Lasius_niger]

Location

Bomo_Chr11(-):15429694-15431644      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.977

CDS

ATGGTGTCTAGGAGGCGGAATCTGCGCAGAATATGGCATAACACTGGCTATCCTGCTGATAAGAGAGCTTTTAATAAAGCTTCTGAGGAATTAAAACACCTAACTAAGGCAATGAAAGAAGACGAGCTACAATCGTTCTTAAGAAATTTAAAGCCTAGTCCAGACACCAACTATTCTCTATGGAAGGCTACTAGGAAAATGAAAAGACCGAAAATGCATGTACCACCTATTAGAGCACCTACTGGAAGCTGGGCCAGATCTGATTCTGAGAAGGCCTCAACTTTCGCAGAGCACCTCAAACTAGTGTTTAAGCCTTTCCCGGGATTAAACTTAACGCACAACGAGGAAGTTTTGAACTCTCTGAATTCTCCACTGCAGATGTGCCTACCGCTAATGTACACAAGTCCGACGGAAGTAGCTAATGAAATTAAGAACCTGAAAGAAGGCAAATCGCCAGGTTATGATGAAATCGATGCAACTATGCTTAAACATCTTCCTAAAAAAGGCATAACACTCATGACTATCATCTTTAATGCATGCATTAGACTGGAGTGCTTTCCTAGTCAATGGAAAATAGCCCAAGTGGTGATGGTGCCAAAGCCTGGAAAACCACCTCACGATGCAGGTTCTTATAGGCCAATAAGCCTCCTTCCAGTCATTGGTAAAATTTTGGAAAAGGTCATTCTTAACAGGATGAAGAAACATCTGCCGAGTGTCCTTCCCACACATCAATTTGGCTTTCGTGAAAAGCACGGAACAATTGAACAGATTCATCGCCTTGTGGATGTCATAAGTGGAACACTTGAAAATAAACAGTACTGCTCAGCTGCCTTTCTCGATATCGGGCAGGCATTTGATAAGGTGTGGCACGATGGACTGTTATTCAAATTGAAAAAAATGTTACCACACAGCTATTACGCTATTATTAAGTCATATCTTAGTGGACGATGCTTTGAGATTAAACATAACCGAGAATCATCACAGATGCATGAGATTACTTCTGGTGTGCCGCAAGGCAGCATACTCGGCCGTGTCCTGTACCTCATCTATACAGCAGATTTACCCACTAACAGAAACACTATCATTGCAACATACGCAGATGATACAGCTATAATGTCTGTTCATGACGACCCTACAACAGCTTCTGAAAACTTACAATCACATCTAGATGACCTTCAGAAATGGTTTAATATGTGGCGCGTTAAAGTAAACCAAAGCAAATCATCCCACGTTACATTCAGCCTCAGGAAACAAACCTGTCCACCTGTAAGCTTATATAACGAAAACATACCGCAAGCGGAAGATGCAAAATATCTTGGCATACATCTGGATCGAAGACTGACATGGCAAAAGCACATCTGGTCTAAGCGAAAACAATTAGACATAAGGCTAAGAAATATGTACTGGTTGACTGGAGGGAAATCCCAGCTTTCGCCAACAAGTAAAATTTTAATTTACAAAACCATCTTAAAGCCAATATGGACATATGGCATACAGCTTTGGGGAACTGCCAGCAATAGCAACGTCGAGATCCTGGAAAGGTTTCAAAATAAAACTTTCAGAACAATGCTAAGAATACCGCATTACATAAGCAACAAGATCATACAAATGGACCTAAATATTCCCACAGTGAAAGAGGAAATAGTAGCTTACAGCAAAAAATATCAAGCCAGGTTATCGACACACGTCAATAAATTGGCGTCGGACCTAGGAGGCACAGGAGCTGTGCAGTTTACTAGATTAAGGAGGCACAGTATACCTACCTTACACAACAGAAATTAA

Protein

MVSRRRNLRRIWHNTGYPADKRAFNKASEELKHLTKAMKEDELQSFLRNLKPSPDTNYSLWKATRKMKRPKMHVPPIRAPTGSWARSDSEKASTFAEHLKLVFKPFPGLNLTHNEEVLNSLNSPLQMCLPLMYTSPTEVANEIKNLKEGKSPGYDEIDATMLKHLPKKGITLMTIIFNACIRLECFPSQWKIAQVVMVPKPGKPPHDAGSYRPISLLPVIGKILEKVILNRMKKHLPSVLPTHQFGFREKHGTIEQIHRLVDVISGTLENKQYCSAAFLDIGQAFDKVWHDGLLFKLKKMLPHSYYAIIKSYLSGRCFEIKHNRESSQMHEITSGVPQGSILGRVLYLIYTADLPTNRNTIIATYADDTAIMSVHDDPTTASENLQSHLDDLQKWFNMWRVKVNQSKSSHVTFSLRKQTCPPVSLYNENIPQAEDAKYLGIHLDRRLTWQKHIWSKRKQLDIRLRNMYWLTGGKSQLSPTSKILIYKTILKPIWTYGIQLWGTASNSNVEILERFQNKTFRTMLRIPHYISNKIIQMDLNIPTVKEEIVAYSKKYQARLSTHVNKLASDLGGTGAVQFTRLRRHSIPTLHNRN

Uniprot

A0A2A4IUM2   A0A2J7R7D0   A0A2J7PVE7   A0A0J7K4E0   A0A2J7Q9Z1   A0A2J7R4U3   + More
A0A2J7PSM7   A0A2J7QES2   A0A2A4K918   A0A2J7PVX3   A0A1L8DIZ6   A0A2J7RQ52   A0A2J7R098   A0A2J7PMN4   A0A2J7QB68   A0A1Y1LKN6   A0A1Y1M7E9   A0A0J7MYU2   A0A2A4K8E7   A0A2J7PDM0   A0A2J7R8R8   A0A2J7Q0S7   A0A2P8Z520   A0A1Y1KFR3   J9LYS0   A0A2J7R579   A0A2J7R4B1   A0A2J7QPI2   X1WVQ4   A0A0J7K811   A0A023F6S4   A0A069DVA6   A0A2S2NI07   A0A2S2N629   A0A1Y1K0N4   A0A2J7RD70   A0A224XK92   A0A2S2N6Q7   A0A2H8U0H5   A0A224X6T4   A0A2S2PBB4   A0A2S2Q352   A0A2S2NPJ7   A0A224X746   A0A142LX26   Q6R811   A0A224X724   A0A0J7K7J8   Q04135   A0A069DZC5   A0A069DW01   A0A0M4EWX7   Q24335   A0A023F700   A0A023F7D1   A0A2S2P698   A0A224XIB0   A0A224XJI0   A0A2S2N814   X1WTA1   A0A0A9YJ00   Q961V7   A0A2S2Q7E7   A0A0V0G5B6   J9M4H5   A0A034VFD2   A0A1Y1JXT3   A0A0A9YU04   A0A2S2PHL7   A0A069DX78   A0A2S2PX53   A0A1B6J5Z9   A0A142LX53   A0A2H8TF37   A0A352X8G4   A0A2S2NNQ6   A0A224XI99   A0A2S2N9P4   A0A2H8TKI9   A0A2S2P6C4   A0A224X6U5   A0A2J7PEB1   A0A2S2NH02   A0A023F069   A0A2S2NPG3   X1WUG2   J9JRR4   A0A2S2QLY2   A0A2S2QJM7   A0A2S2PUS3   A0A023F0I3   A0A023F754   A0A2S2QDN9   A0A224XHW8   A0A2S2QEE0   J9KLB1   A0A224X6S1   A0A1B6EGD8   A0A2S2PJG2  

Pubmed

28004739    29403074    25474469    26334808    25527032    14745026    + More
1705654    2441397    25401762    25348373    30148503   

EMBL

NWSH01007753    PCG62823.1    NEVH01006736    PNF36716.1    NEVH01020963    PNF20308.1    + More
LBMM01014395    KMQ85192.1    NEVH01016340    PNF25410.1    NEVH01007402    PNF35856.1    NEVH01021925    PNF19341.1    NEVH01015305    PNF27092.1    NWSH01000032    PCG80496.1    NEVH01020940    PNF20481.1    GFDF01007661    JAV06423.1    NEVH01001347    PNF42959.1    NEVH01008277    PNF34262.1    NEVH01023979    PNF17579.1    NEVH01016302    PNF25823.1    GEZM01053022    JAV74219.1    GEZM01038405    JAV81653.1    LBMM01013518    KMQ85605.1    PCG80497.1    NEVH01026386    PNF14434.1    NEVH01006721    PNF37225.1    NEVH01019963    PNF22185.1    PYGN01000192    PSN51582.1    GEZM01084969    JAV60363.1    ABLF02041861    NEVH01007393    PNF35987.1    NEVH01007578    PNF35646.1    NEVH01012089    PNF30491.1    ABLF02023279    ABLF02041474    LBMM01012078    KMQ86419.1    GBBI01001646    JAC17066.1    GBGD01000881    JAC88008.1    GGMR01003787    MBY16406.1    GGMR01000005    MBY12624.1    GEZM01097906    JAV54051.1    NEVH01005295    PNF38784.1    GFTR01007997    JAW08429.1    GGMR01000226    MBY12845.1    GFXV01007093    MBW18898.1    GFTR01008261    JAW08165.1    GGMR01014053    MBY26672.1    GGMS01002955    MBY72158.1    GGMR01006491    MBY19110.1    GFTR01008151    JAW08275.1    KU543673    AMS38352.1    AY508487    AAS13459.1    GFTR01008169    JAW08257.1    LBMM01012041    KMQ86458.1    X17551    CAA35587.1    GBGD01000880    JAC88009.1    GBGD01000799    JAC88090.1    CP012527    ALC48130.1    M17214    AAA28508.1    GBBI01001699    JAC17013.1    GBBI01001570    JAC17142.1    GGMR01012305    MBY24924.1    GFTR01008246    JAW08180.1    GFTR01008257    JAW08169.1    GGMR01000676    MBY13295.1    ABLF02037660    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    AY047531    AAK77263.1    GGMS01004444    MBY73647.1    GECL01003538    JAP02586.1    ABLF02017668    ABLF02021394    ABLF02055728    GAKP01017773    JAC41179.1    GEZM01101509    JAV52620.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GGMR01016296    MBY28915.1    GBGD01000389    JAC88500.1    GGMS01000737    MBY69940.1    GECU01013097    JAS94609.1    KU543687    AMS38379.1    GFXV01000908    MBW12713.1    DNOY01000259    HBE18313.1    GGMR01006148    MBY18767.1    GFTR01008256    JAW08170.1    GGMR01000857    MBY13476.1    GFXV01002840    MBW14645.1    GGMR01012283    MBY24902.1    GFTR01008251    JAW08175.1    NEVH01026106    PNF14658.1    GGMR01003864    MBY16483.1    GBBI01003810    JAC14902.1    GGMR01006408    MBY19027.1    ABLF02016613    ABLF02022775    GGMS01009480    MBY78683.1    GGMS01008766    MBY77969.1    GGMR01020516    MBY33135.1    GBBI01003747    JAC14965.1    GBBI01001642    JAC17070.1    GGMS01006655    MBY75858.1    GFTR01008254    JAW08172.1    GGMS01006359    MBY75562.1    ABLF02040174    ABLF02040183    ABLF02055266    GFTR01008271    JAW08155.1    GEDC01000337    JAS36961.1    GGMR01016905    MBY29524.1   

Proteomes

UP000218220    UP000235965    UP000036403    UP000245037    UP000007819    UP000092553    + More

PRIDE

Q04135    Q24335    Q961V7   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4IUM2   A0A2J7R7D0   A0A2J7PVE7   A0A0J7K4E0   A0A2J7Q9Z1   A0A2J7R4U3   + More
A0A2J7PSM7   A0A2J7QES2   A0A2A4K918   A0A2J7PVX3   A0A1L8DIZ6   A0A2J7RQ52   A0A2J7R098   A0A2J7PMN4   A0A2J7QB68   A0A1Y1LKN6   A0A1Y1M7E9   A0A0J7MYU2   A0A2A4K8E7   A0A2J7PDM0   A0A2J7R8R8   A0A2J7Q0S7   A0A2P8Z520   A0A1Y1KFR3   J9LYS0   A0A2J7R579   A0A2J7R4B1   A0A2J7QPI2   X1WVQ4   A0A0J7K811   A0A023F6S4   A0A069DVA6   A0A2S2NI07   A0A2S2N629   A0A1Y1K0N4   A0A2J7RD70   A0A224XK92   A0A2S2N6Q7   A0A2H8U0H5   A0A224X6T4   A0A2S2PBB4   A0A2S2Q352   A0A2S2NPJ7   A0A224X746   A0A142LX26   Q6R811   A0A224X724   A0A0J7K7J8   Q04135   A0A069DZC5   A0A069DW01   A0A0M4EWX7   Q24335   A0A023F700   A0A023F7D1   A0A2S2P698   A0A224XIB0   A0A224XJI0   A0A2S2N814   X1WTA1   A0A0A9YJ00   Q961V7   A0A2S2Q7E7   A0A0V0G5B6   J9M4H5   A0A034VFD2   A0A1Y1JXT3   A0A0A9YU04   A0A2S2PHL7   A0A069DX78   A0A2S2PX53   A0A1B6J5Z9   A0A142LX53   A0A2H8TF37   A0A352X8G4   A0A2S2NNQ6   A0A224XI99   A0A2S2N9P4   A0A2H8TKI9   A0A2S2P6C4   A0A224X6U5   A0A2J7PEB1   A0A2S2NH02   A0A023F069   A0A2S2NPG3   X1WUG2   J9JRR4   A0A2S2QLY2   A0A2S2QJM7   A0A2S2PUS3   A0A023F0I3   A0A023F754   A0A2S2QDN9   A0A224XHW8   A0A2S2QEE0   J9KLB1   A0A224X6S1   A0A1B6EGD8   A0A2S2PJG2  

KEGG

NA   

GO

GO:0003964  

Length:

593

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07492

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01113

outside

1  -  593

 

 

Pi

13.950086

Theta

23.136801

Tajima's D

-0.930932

CLR

18.283393

CSRT

0.146592670366482

Interpretation

Uncertain