Gene

KWMTBOMO06801  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012045

Annotation

small_nuclear_ribonucleoprotein_protein_F_[Bombyx_mori]

Location

Bomo_Chr11(+):15411635-15412769      View in EpiBrowser

Full name

Small nuclear ribonucleoprotein F      

Alternative Name

Membrane-associated protein Deb-B
Sm protein F

Location in the cell

Extracellular   Reliability : 1.52 Nuclear   Reliability : 1.89

CDS

ATGGCGGCTGCTATGCCAATAAATCCCAAACCATTTCTTAATAGTCTAACGGGTAAATCCGTGCTAGTTAAATTAAAATGGGGTCATGAATACAAAGGTTTGTTAGTATCAACAGATGGCTACATGAATTTGCAACTTGCTAATACTGAAGAACTTGTCGATGGAACTTGTACAGGTAATTTAGGTGAAGTTTTAATAAGATGCAATAATGTCTTGTATGTAAGAGGAGCTGATGAAGAAGATGAAGAAGGAGAAATGAAAGAATAA

Protein

MAAAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYVRGADEEDEEGEMKE

Description

Associated with the spliceosome snRNP U1, U2, U4/U6 and U5.

Subunit

Interacts with the SMN complex.

Similarity

Belongs to the snRNP Sm proteins family.
Belongs to the snRNP Sm proteins family. SmF/LSm6 subfamily.

Keywords

Complete proteome   mRNA processing   mRNA splicing   Nucleus   Reference proteome   Ribonucleoprotein   RNA-binding   Spliceosome  

Feature

chain  Small nuclear ribonucleoprotein F

Uniprot

Q1HPQ7   S4NXH0   A0A0L7KZ32   A0A2H1WM16   A0A2A4JYE5   A0A194R3I0   + More
A0A194QF67   A0A212EKD2   A0A1S6GLF7   A0A0J7JXM1   A0A1B0CZA5   A0A2R7X104   A0A084W718   A0A224XRJ9   A0A0P4VX43   R4FLT5   A0A1A9XLV0   A0A1A9UT45   A0A1B0B651   A0A1B0AE47   A0A154PS20   A0A0L7QT76   A0A2A3E808   A0A0M9A664   A0A088AAJ8   E9FTJ1   A0A0P5DVS9   A0A195CJT0   A0A195DWC0   F4W431   A0A195EUE1   A0A151X1K6   A0A158NK06   A0A1I8M2N4   A0A1I8QAT1   E2B6R6   D6WML7   T1E8G6   A0A2M3ZJJ4   A0A2M4ARM9   N6U090   W5JAC9   A0A182FAH3   A0A067R2E7   A0A182XAI7   A0A182MR52   A0A182RQL1   A0A182NRA0   A0A182QJ88   A0A182V4V3   A0A182JN00   A0A182Y6Q5   A0A182JTU1   A0A182LEC6   A0A182P3V3   A0A182TQF9   A0A182HSC7   A0A0P6GYV6   A0A1L8DGV7   A0A182VZY8   A0A0L0BU19   D3PHP0   Q7PR85   A0A0P6IV53   A0A023EDV8   A0A0K8TLI9   A0A0P6BYQ8   A0A2P8XF07   C1BNJ1   A0A2J7RQY2   E2A352   U5EJ89   A0A1Q3EZZ1   B0W6E0   A0A3L8D7G1   A0A2P8Y596   A0A1J1HQY0   A0A1W4UHG9   B4LJS9   B4KTL2   Q292C3   B4G9W8   B4P5M8   B3MC82   B4MY85   B4HP62   B4JW74   B3NS68   B4NSF8   Q24297   A0A026VRU8   A0A1Q3F121   A0A197K8A6   A7RX20   A0A0K0LC95   A0A087SM32   A0A336KN07   A0A023FDP6   A0A023FTZ5   A0A1E1WX16  

Pubmed

19121390    23622113    26227816    26354079    22118469    28043022    + More
24438588    27129103    21292972    21719571    21347285    25315136    20798317    18362917    19820115    23537049    20920257    23761445    24845553    25244985    20966253    26108605    12364791    14747013    17210077    26999592    24945155    26369729    29403074    30249741    17994087    15632085    17550304    22936249    1694092    10731132    12537572    12537569    18621711    24508170    17615350    26254009    25012212    28503490   

EMBL

BABH01016303    BABH01016304    DQ443345    ABF51434.1    GAIX01014205    JAA78355.1    + More
JTDY01004238    KOB68410.1    ODYU01009587    SOQ54121.1    NWSH01000397    PCG76698.1    PCG76699.1    KQ460779    KPJ12363.1    KQ459252    KPJ02111.1    AGBW02014303    OWR41908.1    KY314236    AQS22670.1    LBMM01022180    KMQ82933.1    AJVK01002214    KK856313    PTY25474.1    ATLV01021094    KE525312    KFB46012.1    GFTR01001281    JAW15145.1    GDKW01001358    JAI55237.1    ACPB03013618    ACPB03013619    GAHY01001258    JAA76252.1    JXJN01008984    KQ435119    KZC14702.1    KQ414755    KOC61769.1    KZ288337    PBC27845.1    KQ435727    KOX78050.1    GL732524    EFX89371.1    GDIP01151960    LRGB01003123    JAJ71442.1    KZS04558.1    KQ977642    KYN00986.1    KQ980295    KYN16859.1    GL887491    EGI71027.1    KQ981979    KYN31517.1    KQ982585    KYQ54258.1    GL446000    EFN88650.1    KQ971343    EFA04291.1    GAMD01002783    JAA98807.1    GGFM01007879    MBW28630.1    GGFK01009937    MBW43258.1    APGK01054265    APGK01054266    KB741248    KB632305    ENN71952.1    ERL91849.1    ADMH02002037    GGFL01004390    ETN59815.1    MBW68568.1    KK853064    KDR11878.1    AXCM01008428    AXCN02001467    APCN01000261    GDIQ01026722    JAN68015.1    GFDF01008396    JAV05688.1    JRES01001335    KNC23575.1    BT121146    ADD38076.1    AAAB01008859    EAA07677.2    GDUN01000891    JAN95028.1    GAPW01006638    GAPW01006637    GEHC01001252    JAC06961.1    JAV46393.1    GDAI01002818    JAI14785.1    GDIP01008688    JAM95027.1    PYGN01002385    PSN30588.1    BT076170    ACO10594.1    NEVH01000613    PNF43239.1    GL436272    EFN72155.1    GANO01002322    JAB57549.1    GFDL01014175    JAV20870.1    DS231848    EDS36614.1    QOIP01000012    RLU16186.1    PYGN01000910    PSN39429.1    CVRI01000019    CRK90437.1    CH940648    EDW60588.1    CH933808    EDW09595.1    CM000071    EAL24939.1    CH479181    EDW31720.1    CM000158    EDW90825.1    CH902619    EDV36182.1    CH963894    EDW77074.1    CH480816    EDW47511.1    CH916375    EDV98212.1    CH954179    EDV56370.1    CH982208    CH982209    CM002911    EDX15536.1    EDX15540.1    KMY93117.1    L33341    AE013599    AY118862    KK111204    EZA46457.1    GFDL01013795    JAV21250.1    KV442021    OAQ33403.1    DS469549    EDO43950.1    KJ787603    AIX87794.1    KL662135    QOKY01000159    KFM26786.1    RMZ55745.1    UFQS01000542    UFQT01000542    SSX04735.1    SSX25098.1    GBBK01004466    JAC20016.1    GBBL01002411    JAC24909.1    GFAC01007613    JAT91575.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000036403    UP000092462    UP000030765    UP000015103    UP000092443    UP000078200    UP000092460    UP000092445    UP000076502    UP000053825    UP000242457    UP000053105    UP000005203    UP000000305    UP000076858    UP000078542    UP000078492    UP000007755    UP000078541    UP000075809    UP000005205    UP000095301    UP000095300    UP000008237    UP000007266    UP000019118    UP000030742    UP000000673    UP000069272    UP000027135    UP000076407    UP000075883    UP000075900    UP000075884    UP000075886    UP000075903    UP000075880    UP000076408    UP000075881    UP000075882    UP000075885    UP000075902    UP000075840    UP000075920    UP000037069    UP000007062    UP000245037    UP000235965    UP000000311    UP000002320    UP000279307    UP000183832    UP000192221    UP000008792    UP000009192    UP000001819    UP000008744    UP000002282    UP000007801    UP000007798    UP000001292    UP000001070    UP000008711    UP000000304    UP000000803    UP000053097    UP000078512    UP000001593    UP000028924    UP000279271   

PRIDE

Q1HPQ7    Q24297   

Pfam

PF01423   LSM

Interpro

IPR016487   Lsm6/sSmF        + More
IPR010920   LSM_dom_sf       
IPR001163   LSM_dom_euk/arc       
IPR034100   Sm_F       

SUPFAM

SSF50182   SSF50182       

CDD

cd01722  Sm_F

ProteinModelPortal

Q1HPQ7   S4NXH0   A0A0L7KZ32   A0A2H1WM16   A0A2A4JYE5   A0A194R3I0   + More
A0A194QF67   A0A212EKD2   A0A1S6GLF7   A0A0J7JXM1   A0A1B0CZA5   A0A2R7X104   A0A084W718   A0A224XRJ9   A0A0P4VX43   R4FLT5   A0A1A9XLV0   A0A1A9UT45   A0A1B0B651   A0A1B0AE47   A0A154PS20   A0A0L7QT76   A0A2A3E808   A0A0M9A664   A0A088AAJ8   E9FTJ1   A0A0P5DVS9   A0A195CJT0   A0A195DWC0   F4W431   A0A195EUE1   A0A151X1K6   A0A158NK06   A0A1I8M2N4   A0A1I8QAT1   E2B6R6   D6WML7   T1E8G6   A0A2M3ZJJ4   A0A2M4ARM9   N6U090   W5JAC9   A0A182FAH3   A0A067R2E7   A0A182XAI7   A0A182MR52   A0A182RQL1   A0A182NRA0   A0A182QJ88   A0A182V4V3   A0A182JN00   A0A182Y6Q5   A0A182JTU1   A0A182LEC6   A0A182P3V3   A0A182TQF9   A0A182HSC7   A0A0P6GYV6   A0A1L8DGV7   A0A182VZY8   A0A0L0BU19   D3PHP0   Q7PR85   A0A0P6IV53   A0A023EDV8   A0A0K8TLI9   A0A0P6BYQ8   A0A2P8XF07   C1BNJ1   A0A2J7RQY2   E2A352   U5EJ89   A0A1Q3EZZ1   B0W6E0   A0A3L8D7G1   A0A2P8Y596   A0A1J1HQY0   A0A1W4UHG9   B4LJS9   B4KTL2   Q292C3   B4G9W8   B4P5M8   B3MC82   B4MY85   B4HP62   B4JW74   B3NS68   B4NSF8   Q24297   A0A026VRU8   A0A1Q3F121   A0A197K8A6   A7RX20   A0A0K0LC95   A0A087SM32   A0A336KN07   A0A023FDP6   A0A023FTZ5   A0A1E1WX16  

PDB

6QX9     E-value=1.25272e-27,     Score=299

KEGG

100101178    K11098 small nuclear ribonucleoprotein F | (RefSeq) small nuclear ribonucleoprotein protein F

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0005732   GO:0000387   GO:0005681   GO:0005685   GO:0071013   GO:0008380   GO:0006397   GO:0000398   GO:0071011   GO:0030532   GO:0005622   GO:0004930   GO:0006355   GO:0043565   GO:0016567   GO:0016020   GO:0005634   GO:0006260  

PANTHER

PTHR11021  

Subcellular location

Nucleus  

Length:

88

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000770000000000001

Exp number, first 60 AAs:

0.000690000000000001

Total prob of N-in:

0.25425

outside

1  -  88

 

 

Pi

19.174975

Theta

23.951814

Tajima's D

-0.611478

CLR

4.648756

CSRT

0.214089295535223

Interpretation

Uncertain