SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06798
Pre Gene Modal
BGIBMGA012110
Annotation
PREDICTED:_drebrin-like_protein_A_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.268
 

Sequence

CDS
ATGGCTATAAACCTAGATAAACATAAAGAAGCTTTAATCAGTGCGTGGAGAGATGTATTAGACGAAAAAACCGAAACGAACTGGGCCTTGTATGGTTATGAAGGGCTCACAAATGATCTCAAGTTCGTCAGCAAAGGAGATGGAGGCTTGACTGAGTTGATTGATGACTTGAATAGTGGGAAAATACAATATGCATTCTTAAAAGTGGATGTACCAAATGGAAGCATATCTAAATATGTGCTTATCAACTGGCAGGGTGAAGGTGCACCAACTGTTAGGAAAGGAACCTGTGCAAACCACATTAAACATGTGGCTAATTTCTTCACCGGTTTCCACTTGACCATGCACGCAAGAACCGAAGATGACTTAGACGAAAAGATAATCCTAGACAAACTGGCCAAAGCTGGTTCAGCATTTAATTTCAAGTCGAGTAGACCCGAGGAATTACCGCCAAGTGGACCAGTTGGGACTGCATATCAGAAAGTTAATCCGGTAAAAGAAATCAATTCAAAAGAGAGAGACCAGTTTTGGCAGAAAGAAGAAATTGAAGAGAAGAAAAGAATAGAAGCAGAAAAGAAAAGGAAAGAGGAGGATAAAAGAAAAGCCGAGGAAATGGTCAGAAGAAGAGACGAGTTAGAAGCACAGAAAAGAGCGAAAGCCGAACACGACAAAAGTCCAGTGGAAACTGTGAGTCCTACCGGGGTGAGTGCGAGCGAGGCGCTCCGGCGGCAACGGTCTGCGGAAGCGAGACAGCTGATCGGCTCCTCCACCGCTGCTGCACGAGCACTCTTCCAACAGAACTTGGCTCAAGGACAGATCAACACCTCAAGATCGAATTCGATCCCAGAAAAGCCCGTACGTAGTTCAGTGATCGCGCAACGCATCAACACGTTCACGCGAGGTCAATCACCCCAACCGGTTTCGCCGGTCAAAGCCCCTACGAAATTGGACACGAACATTCCGGAAGTAGGGGTGCAGCCCGAAACGAGTCCCCTGAAGAACATCGACAAGATCAAGATGAGCCTAGAGAGTCCTTCCCAGATTCAGTACGAGCCGATCATCGACCCGTCGGACTTGAGTCCCAGCACTGACGTCGAGCCGGCCTCGTTCGGTGACGTCACGTACGCGGAATGCAAACGTGACGACAGCTACCGGGACATCGGAACGGACTCGTCGAAGCAAAGCGAGCCGATGATAAAGCAGAACATTCTGGAAAACGACATGTTCGACGCAGCGTACTCCAGTTCGAACGAAAACGACGATGACGACAGCGACAATAAGTTCAGCACGATCAAACGGTCGCCCTACAGTAAGAGTAGTGCGGCCGAAGACACCGGCAAGGAGCTCAGCCGACAGAACACAGTCATAGAGAATGTTAATTACAAAAAAGAAGCCAACGGTACCTTAAACGAAGATGCATCTCCTGAGGGTTTAGAAGAAGAGGGTACAATATACGAAGATCTCAATGAAGATCCTGGACTGACCGCTAGGGCGCTGTACGATTATCAAGCTGCGGACGAGTCTGAGATAACGTTCGACCCGGGGGACATCATCTCGCACATCGAGCAGATAGACGCGGGCTGGTGGCAGGGGCTCGGGCCGCGGGGGGAGTTCGGCCTGTTCCCCGCCAACTACGTGGAGCTGCTGCCGGCGCACCCCCGCTAG
Protein
MAINLDKHKEALISAWRDVLDEKTETNWALYGYEGLTNDLKFVSKGDGGLTELIDDLNSGKIQYAFLKVDVPNGSISKYVLINWQGEGAPTVRKGTCANHIKHVANFFTGFHLTMHARTEDDLDEKIILDKLAKAGSAFNFKSSRPEELPPSGPVGTAYQKVNPVKEINSKERDQFWQKEEIEEKKRIEAEKKRKEEDKRKAEEMVRRRDELEAQKRAKAEHDKSPVETVSPTGVSASEALRRQRSAEARQLIGSSTAAARALFQQNLAQGQINTSRSNSIPEKPVRSSVIAQRINTFTRGQSPQPVSPVKAPTKLDTNIPEVGVQPETSPLKNIDKIKMSLESPSQIQYEPIIDPSDLSPSTDVEPASFGDVTYAECKRDDSYRDIGTDSSKQSEPMIKQNILENDMFDAAYSSSNENDDDDSDNKFSTIKRSPYSKSSAAEDTGKELSRQNTVIENVNYKKEANGTLNEDASPEGLEEEGTIYEDLNEDPGLTARALYDYQAADESEITFDPGDIISHIEQIDAGWWQGLGPRGEFGLFPANYVELLPAHPR

Summary

Pfam
PF00241   Cofilin_ADF        + More
PF00018   SH3_1
PF14604   SH3_9
Interpro
IPR036028   SH3-like_dom_sf        + More
IPR002108   ADF-H       
IPR035717   Drebrin-like_SH3       
IPR001452   SH3_domain       
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR029923   Dbnl       
SUPFAM
SSF50044   SSF50044       
Gene 3D
PDB
1X67     E-value=1.6914e-28,     Score=315

Ontologies

Topology

Length:
554
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00218
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00244
outside
1  -  554
 
 

Population Genetic Test Statistics

Pi
22.911109
Theta
19.670742
Tajima's D
0.464491
CLR
0.678947
CSRT
0.504824758762062
Interpretation
Uncertain
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