Gene

KWMTBOMO06774  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012120

Annotation

PREDICTED:_arf-GAP_with_dual_PH_domain-containing_protein_1-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr11(-):14690719-14708491      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.356

CDS

ATGGTAGACCATAACCAGAAATTATTACAGGAGTTGCAAAAACGAAGTGGAAATAACGTGTGCGCCGACTGTTTAAATCCTGACCCAGACTGGGCTTCTTACAACCTTGGGATATTCATATGCATGCGATGTGCAAGCATCCACCGTGGCATGGGCGCTCATATCAGCAAAGTGAAACATTTGAAGCTGGACAGATGGGAAGACTCACAGGTACAGAGGATGAAGGAAGTCGGGAACGTAACTGCTAGGAATAAATACGAGGAACGAGTTCCCCCTTGCTACAGAAGACCTAATAGAAATGACCCTCAAGTCCTCATTGAACAATGGATCCGAGCCAAATATGAGCGCGAAGAATTCTGTCATCCCGAACGTCAGTCGTATTTGTCGGGAAGCATGCAGGGCTTCCTTATGAAACGAGGCAAGGAGGACAGCAGATACCAACTCAGAAAATTCATACTCAGTGAAACCGAAGATACGCTCAAGTATCACGTTAGAGAGGACAAGGAACCGAAGGGCGTTCTCAAATTGTCAGAGTTGAATGTTGCTTTCGCGCCACCAAAAATCGGCCACATGAACTCAATGCAGTTGACATTCATGAAAGATGGCACCACTAGGCACATCTATGTTTATCACGAGGAGCCTGAAGTAATAAGCAACTGGTATACAGCGATACGTTGTGCACAACTCCATCTACTTCAAGTTGCGTTTCCGTCGACTCCGGAGTCGGATCTCATTCATCGCCTACCAAGAGATTTCGCACGTGAAGGCTGGCTATGGAAGACCGGGCCCAGACCTACTGACGCTCATAGAAGACGCTGGTTCACCCTCGACAACAGAAAACTCATGTACCACGACGAGCCGCTTGATGCTTATCCCAAGGGCGAGATTTTTGTCGGTAACGAATCGAACGGCTACTGTATTAGAGTTTCAAATACGGGCAATGGCTGCAAGGAGGCGAGGTTCCCTTTCCAGCTGGTGACTCCAGAAAGAACGTACTGCCTCGCTGCGACAACACACGAGGACCGCGACTGTTGGCTAGCAGTTCTGCAGCAGACGATCAAAAGAAGTCTCACGCCTCAGGATTCTACCATTGAAGCTGTCCTTGTGAGGAAACGCAACACATCGAACCCGATCAACATTTTCTCGGGAAGGTAG

Protein

MVDHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWEDSQVQRMKEVGNVTARNKYEERVPPCYRRPNRNDPQVLIEQWIRAKYEREEFCHPERQSYLSGSMQGFLMKRGKEDSRYQLRKFILSETEDTLKYHVREDKEPKGVLKLSELNVAFAPPKIGHMNSMQLTFMKDGTTRHIYVYHEEPEVISNWYTAIRCAQLHLLQVAFPSTPESDLIHRLPRDFAREGWLWKTGPRPTDAHRRRWFTLDNRKLMYHDEPLDAYPKGEIFVGNESNGYCIRVSNTGNGCKEARFPFQLVTPERTYCLAATTHEDRDCWLAVLQQTIKRSLTPQDSTIEAVLVRKRNTSNPINIFSGR

Uniprot

A0A2A4JKR7   H9JRG0   A0A3S2M8T8   A0A2A4JK16   A0A194PEN7   A0A2H1VKP4   + More
A0A1E1W9M1   A0A212EUC5   A0A1E1WD80   A0A194R471   A0A1L8DMM1   A0A158NHU9   A0A1W4XCU1   F4X3D2   A0A1Y1KAN3   A0A2A3E3E3   A0A088A3I4   A0A067QZI2   E2AVA7   A0A154NYS9   A0A0M9A6X2   K7IQS0   E2C8N7   A0A232FKG3   A0A0C9QS63   A0A195FFM7   A0A1Q3G0D3   A0A195AWG4   A0A195CDF8   A0A1L8DM36   A0A195EHB5   A0A151WQU8   A0A182K2A8   A0A182XYP9   A0A182JGZ2   A0A1Y9IW65   A0A182R7B5   A0A182PQL3   A0A182QCS4   A0A182M0I1   A0A2J7QUM6   A0A182UNU8   A0A084VD62   A0A182X3X3   A0A182KR47   Q7QJA2   Q0IEU3   A0A182UGB4   A0A0L7L9T4   A0A182I346   A0A3L8DIX3   A0A1S4FI57   A0A182NI20   A0A2M3Z8K3   A0A2M4AD41   A0A182FDE4   A0A2M4BR19   A0A0L7QS65   W5JFR0   A0A1Q3G0I2   D6WDB5   A0A0T6B811   A0A2M4ADF0   A0A2M4CYS1   A0A1W4XN58   T1HGT2   A0A026WU38   A0A1B6HMU7   A0A182HAX0   A0A1B6EEN5   A0A2R7WLC3   A0A1B6CL23   A0A0A9WIF1   A0A0P5HJZ1   V5I111   E9GXU5   A0A0P5M1F1   L7M2N1   A0A0N8ABT6   N6U9M3   B7Q985   C3Y8X2   A0A131X8Y9   A0A2R5LL84   A0A0P4Y363   A0A0P4WGN9   A0A1J1ICP4   A0A293LNA0   A0A0P4W8F4   C0JBT6   A0A1S3HND0   A0A1S3HNB0   A0A3R7PES1   B0XIK8   R7U8G8   A0A1E1X6G8   T1GG86   A0A3Q0IZ79   M3Z2H0   O02753  

Pubmed

19121390    26354079    22118469    21347285    21719571    28004739    + More
24845553    20798317    20075255    28648823    25244985    24438588    20966253    12364791    14747013    17210077    17510324    26227816    30249741    20920257    23761445    18362917    19820115    24508170    26483478    25401762    26823975    25765539    21292972    25576852    23537049    18563158    28049606    19073266    23254933    28503490    23236062    9151987   

EMBL

NWSH01001146    PCG72409.1    BABH01016379    RSAL01000007    RVE54113.1    PCG72407.1    + More
KQ459606    KPI91737.1    ODYU01003082    SOQ41393.1    GDQN01007415    JAT83639.1    AGBW02012418    OWR45088.1    GDQN01006145    JAT84909.1    KQ460779    KPJ12319.1    GFDF01006470    JAV07614.1    ADTU01016068    GL888609    EGI59113.1    GEZM01090663    JAV57210.1    KZ288403    PBC26218.1    KK852855    KDR14920.1    GL443059    EFN62661.1    KQ434783    KZC04722.1    KQ435724    KOX78485.1    GL453666    EFN75767.1    NNAY01000082    OXU31152.1    GBYB01003487    GBYB01009813    JAG73254.1    JAG79580.1    KQ981636    KYN38829.1    GFDL01001798    JAV33247.1    KQ976725    KYM76588.1    KQ978023    KYM98103.1    GFDF01006694    JAV07390.1    KQ978957    KYN27262.1    KQ982813    KYQ50282.1    AXCN02000387    AXCM01000608    NEVH01010503    PNF32280.1    ATLV01011185    KE524650    KFB35906.1    AAAB01008807    EAA04627.4    CH477478    EAT40258.1    JTDY01002041    KOB72258.1    APCN01000197    QOIP01000008    RLU19798.1    GGFM01004102    MBW24853.1    GGFK01005207    MBW38528.1    GGFJ01006369    MBW55510.1    KQ414758    KOC61473.1    ADMH02001280    ETN63212.1    GFDL01001753    JAV33292.1    KQ971321    EEZ99543.2    LJIG01009233    KRT83490.1    GGFK01005495    MBW38816.1    GGFL01006269    MBW70447.1    ACPB03006856    KK107109    EZA59141.1    GECU01031730    JAS75976.1    JXUM01031575    KQ560926    KXJ80322.1    GEDC01000905    JAS36393.1    KK855033    PTY20413.1    GEDC01023176    JAS14122.1    GBHO01036423    GBRD01002263    GDHC01020808    GDHC01003506    JAG07181.1    JAG63558.1    JAP97820.1    JAQ15123.1    GDIQ01225847    GDIP01112848    LRGB01002451    JAK25878.1    JAL90866.1    KZS07480.1    GANP01003510    JAB80958.1    GL732573    EFX75755.1    GDIQ01170965    JAK80760.1    GACK01006719    JAA58315.1    GDIP01162849    JAJ60553.1    APGK01034640    APGK01034641    APGK01034642    KB740914    KB632352    ENN78390.1    ERL93266.1    ABJB010033394    DS887784    EEC15407.1    GG666492    EEN63028.1    GEFH01005228    JAP63353.1    GGLE01006089    MBY10215.1    GDIP01233095    JAI90306.1    GDRN01064076    JAI64895.1    CVRI01000043    CRK96209.1    GFWV01003465    MAA28195.1    GDRN01064077    JAI64894.1    FJ172672    ACN32215.1    QCYY01002630    ROT68815.1    DS233328    EDS29432.1    AMQN01009828    KB306314    ELT99981.1    GFAC01004374    JAT94814.1    CAQQ02194750    CAQQ02194751    AEYP01088986    JP005159    AER93756.1    D89940    BAA20132.1   

Proteomes

UP000218220    UP000005204    UP000283053    UP000053268    UP000007151    UP000053240    + More
UP000005205    UP000192223    UP000007755    UP000242457    UP000005203    UP000027135    UP000000311    UP000076502    UP000053105    UP000002358    UP000008237    UP000215335    UP000078541    UP000078540    UP000078542    UP000078492    UP000075809    UP000075881    UP000076408    UP000075880    UP000075920    UP000075900    UP000075885    UP000075886    UP000075883    UP000235965    UP000075903    UP000030765    UP000076407    UP000075882    UP000007062    UP000008820    UP000075902    UP000037510    UP000075840    UP000279307    UP000075884    UP000069272    UP000053825    UP000000673    UP000007266    UP000015103    UP000053097    UP000069940    UP000249989    UP000076858    UP000000305    UP000019118    UP000030742    UP000001555    UP000001554    UP000183832    UP000085678    UP000283509    UP000002320    UP000014760    UP000015102    UP000079169    UP000000715   

PRIDE

H9JRG0   

Pfam

PF00169   PH        + More
PF01412   ArfGap
PF00006   ATP-synt_ab
PF02874   ATP-synt_ab_N
PF16886   ATP-synt_ab_Xtn

Interpro

IPR001849   PH_domain        + More
IPR011993   PH-like_dom_sf       
IPR037278   ARFGAP/RecO       
IPR037849   PH1_ADAP       
IPR037851   PH2_ADAP       
IPR001164   ArfGAP_dom       
IPR038508   ArfGAP_dom_sf       
IPR005725   ATPase_V1-cplx_asu       
IPR004100   ATPase_F1/V1/A1_a/bsu_N       
IPR023366   ATP_synth_asu-like_sf       
IPR031686   ATP-synth_a_Xtn       
IPR036121   ATPase_F1/V1/A1_a/bsu_N_sf       
IPR024034   ATPase_F1/V1_b/a_C       
IPR022878   V-ATPase_asu       
IPR000194   ATPase_F1/V1/A1_a/bsu_nucl-bd       
IPR020003   ATPase_a/bsu_AS       
IPR027417   P-loop_NTPase       

SUPFAM

SSF57863   SSF57863        + More
SSF52540   SSF52540       
SSF50615   SSF50615       

Gene 3D

2.30.29.30     3.30.40.160     1.10.1140.10     2.40.30.20    

CDD

cd01251  PH2_ADAP
cd13252  PH1_ADAP

ProteinModelPortal

A0A2A4JKR7   H9JRG0   A0A3S2M8T8   A0A2A4JK16   A0A194PEN7   A0A2H1VKP4   + More
A0A1E1W9M1   A0A212EUC5   A0A1E1WD80   A0A194R471   A0A1L8DMM1   A0A158NHU9   A0A1W4XCU1   F4X3D2   A0A1Y1KAN3   A0A2A3E3E3   A0A088A3I4   A0A067QZI2   E2AVA7   A0A154NYS9   A0A0M9A6X2   K7IQS0   E2C8N7   A0A232FKG3   A0A0C9QS63   A0A195FFM7   A0A1Q3G0D3   A0A195AWG4   A0A195CDF8   A0A1L8DM36   A0A195EHB5   A0A151WQU8   A0A182K2A8   A0A182XYP9   A0A182JGZ2   A0A1Y9IW65   A0A182R7B5   A0A182PQL3   A0A182QCS4   A0A182M0I1   A0A2J7QUM6   A0A182UNU8   A0A084VD62   A0A182X3X3   A0A182KR47   Q7QJA2   Q0IEU3   A0A182UGB4   A0A0L7L9T4   A0A182I346   A0A3L8DIX3   A0A1S4FI57   A0A182NI20   A0A2M3Z8K3   A0A2M4AD41   A0A182FDE4   A0A2M4BR19   A0A0L7QS65   W5JFR0   A0A1Q3G0I2   D6WDB5   A0A0T6B811   A0A2M4ADF0   A0A2M4CYS1   A0A1W4XN58   T1HGT2   A0A026WU38   A0A1B6HMU7   A0A182HAX0   A0A1B6EEN5   A0A2R7WLC3   A0A1B6CL23   A0A0A9WIF1   A0A0P5HJZ1   V5I111   E9GXU5   A0A0P5M1F1   L7M2N1   A0A0N8ABT6   N6U9M3   B7Q985   C3Y8X2   A0A131X8Y9   A0A2R5LL84   A0A0P4Y363   A0A0P4WGN9   A0A1J1ICP4   A0A293LNA0   A0A0P4W8F4   C0JBT6   A0A1S3HND0   A0A1S3HNB0   A0A3R7PES1   B0XIK8   R7U8G8   A0A1E1X6G8   T1GG86   A0A3Q0IZ79   M3Z2H0   O02753  

PDB

3MDB     E-value=1.36271e-98,     Score=918

KEGG

101744912    no KO assigned | (RefSeq) arf-GAP with dual PH domain-containing protein 1-like

GO

GO:0005096   GO:0046872   GO:1902936   GO:0005886   GO:0016021   GO:0046034   GO:0046961   GO:0033180   GO:0005524   GO:0015991   GO:0005634   GO:0005829   GO:0006457   GO:0005515   GO:0006355   GO:0043565   GO:0016567   GO:0016020   GO:0006260   GO:0043547  

PANTHER

PTHR43607  

Length:

384

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02759

Exp number, first 60 AAs:

0.02744

Total prob of N-in:

0.01454

outside

1  -  384

 

 

Pi

265.293939

Theta

185.888319

Tajima's D

1.161737

CLR

0.000364

CSRT

0.701514924253787

Interpretation

Uncertain