Silkworm Genome Informatics Database

Gene

KWMTBOMO06767

Pre Gene Modal

BGIBMGA012124

Annotation

extramacrochaetae_protein_[Bombyx_mori]

Location

Bomo_Chr11(-):14499424-14503681 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 2.895

CDS

ATGAAAGCGATAACAGCAGTGTGCGCGACCGGCGCCTCGGTCCCCGCGATCGCGAGCGGTCGAGTGCAGCGACACCGGGATGGCGAAAACGCTGAGATACAAATGTACCTCTCGAAGCTCCAGGATCTCGTACCCTTCATGCCCAAGAATAGAAAGATCTCCAAATTAGAAGTGATTCAGCATGTTATAGACTATATCTGCGACCTTCAATCAGCGTTGGAGAATCACCCAGCTGTTGGACAATTTGACGCTGAAGGCGCCTTAGCGTCGCCACCTTGCGCAGCGTCGCCGCAGCCCCGCCCTCAGAGGAGACCGCTAGGCCCTCGCCCTACGCCCAACACCATCCTCCGCAAATCACCCTCCACACACGAACACAGAAATCAAACGGCACCAGAAAAACAAAACCAACCTGACAGGCCGTCGTGTTAA

Protein

MKAITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENHPAVGQFDAEGALASPPCAASPQPRPQRRPLGPRPTPNTILRKSPSTHEHRNQTAPEKQNQPDRPSC

Uniprot

Q2F6A3 A0A0L7LHA1 H9JRG4 A0A2H1WXF1 I4DS37 A0A212ELE7 + More
A0A194R4Z3 A0A194PKU6 S4PUY3 A0A1Y1MRX3

Pubmed

26227816 19121390 22651552 22118469 26354079 23622113 + More
28004739

EMBL

DQ311169 ABD36114.1 JTDY01001144 KOB74744.1 BABH01016393 ODYU01011784 + More
SOQ57728.1 AK405402 BAM20727.1 AGBW02014084 OWR42298.1 KQ460779 KPJ12310.1 KQ459606 KPI91725.1 GAIX01009488 JAA83072.1 GEZM01029610 JAV86047.1

Proteomes

UP000037510 UP000005204 UP000007151 UP000053240 UP000053268

PRIDE

Q2F6A3 H9JRG4

Pfam

PF00010 HLH

Interpro

IPR036638   HLH_DNA-bd_sf        + More
IPR026052   DNA-bd_prot-inh
IPR011598   bHLH_dom

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

Q2F6A3 A0A0L7LHA1 H9JRG4 A0A2H1WXF1 I4DS37 A0A212ELE7 + More
A0A194R4Z3 A0A194PKU6 S4PUY3 A0A1Y1MRX3

PDB

4AYA E-value=6.63282e-09, Score=138

KEGG

693081 K17696 DNA-binding protein inhibitor ID, other | (RefSeq) extramacrochaetae protein

PATHWAY

04350 TGF-beta signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0046983 GO:0005634 GO:0045892 GO:0005737 GO:0003676 GO:0005515 GO:0006355 GO:0043565 GO:0016567 GO:0016020 GO:0006260

PANTHER

PTHR11723

Length:

142

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03494

Exp number, first 60 AAs:

0.03494

Total prob of N-in:

0.42761

outside

1 - 142

Pi

15.686653

Theta

16.977709

Tajima's D

-0.434753

CLR

0.133429

CSRT

0.255137243137843

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics