SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06763  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012030
Annotation
PREDICTED:_serrate_RNA_effector_molecule_homolog_[Amyelois_transitella]
Location
Bomo_Chr11(+):14402682-14404953      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.471
 

Sequence

CDS
ATGGAGATCCTGAAACAAGTGGCTAACGCACAGGTCGTGTTCACTGCTGCGGTGGTATCCGTTGTTTTAGTTTGTGCGGCGTTGGTATTTGTTTTTGGGTTCCGTTCTGCTGAACCGCCGCAATTCGACAAGTTGCCGCTAGTATTGGACGACAAGAAATCTGCCAAAGCCAAGAATAAAAAAAAGGAGAAGAAGTCTTCACCCAACCGATCTACATCTGATGATGTGAAGACCAAGGCTGATTCCTCCAAGAAATCTCCATCTAAGGAGAAAAAGGAGGAAAAAGTAAAGGAAGCTGACAAGCCTAAGCCTAAGGAAAAATCTGTTGAACCCAAGTTAGCTAAAAAAGAAGCAGTTATTGAAAAGAAAAATAGAAAGAATAAGGCTGGTGCAGAAGTTGAAAAACCTGCTGACTTTGATGATGGTAATTGGGAAGAGGTACCTAAAAAGAATGATAAGAAAGGAGAAAAAAAGAAAGTAAAGGCTCCAGAGGAAAAACAGAAGGAAAAAGAAAAGAAAAAAGAAAGTCCCATCAAGAAGGTTAAAAAAGCAAAGGATACAGATGTTGAAGCTGCTAGACCTAATGAAGATTCAAGTGAGAAAGTTAAAATTGTTAGTGTGAAAGGCCCTAACTTAGATGCGAATGTAACAAAAGCACTTCAAGAACAAGTGAAAGAATTTGAACGTGCAATGAAAGAGGCTCAACGCCGAGACCAGGGAATTGTGAATGATGAAGGATCCAATGAAATTGAGGAGCTGACTGACGTTAAAGATCTCAGAAGCAATAAAAAAAAGGAAAATAAAGAGAAACAAATAAAGAAAAAGGCTGGTGAGATCAAAGCAGATTCTGTAGAGAAGGAAAACTTGGAGCCTGAGAAACAGGAGGAAAATCAGAATGCACCAGCTTTTGATGAGCTTGGTGATACCTGGACAGAATCAAAAACATCCAAAAAAGGAAAAAAGAAAGCTCGCAAAGACCAGTGA
Protein
MEILKQVANAQVVFTAAVVSVVLVCAALVFVFGFRSAEPPQFDKLPLVLDDKKSAKAKNKKKEKKSSPNRSTSDDVKTKADSSKKSPSKEKKEEKVKEADKPKPKEKSVEPKLAKKEAVIEKKNRKNKAGAEVEKPADFDDGNWEEVPKKNDKKGEKKKVKAPEEKQKEKEKKKESPIKKVKKAKDTDVEAARPNEDSSEKVKIVSVKGPNLDANVTKALQEQVKEFERAMKEAQRRDQGIVNDEGSNEIEELTDVKDLRSNKKKENKEKQIKKKAGEIKADSVEKENLEPEKQEENQNAPAFDELGDTWTESKTSKKGKKKARKDQ

Summary

Uniprot
H9JR70   A0A1E1WBU7   A0A2A4JKI9   A0A2H1WZ26   A0A212ELD0   A0A3G1T1D3   + More
I4DMP2   I4DN74   A0A194PG90   S4PHU7   A0A194R4Y8   A0A0L7LDC3  
Pubmed
19121390    22118469    22651552    26354079    23622113    26227816    + More
EMBL
BABH01016398    GDQN01006639    GDQN01006624    JAT84415.1    JAT84430.1    NWSH01001104    + More
PCG72595.1    ODYU01012166    SOQ58335.1    AGBW02014084    OWR42294.1    MG846942    AXY94794.1    AK402560    BAM19182.1    AK402750    BAM19364.1    KQ459606    KPI91719.1    GAIX01005690    JAA86870.1    KQ460779    KPJ12305.1    JTDY01001566    KOB73513.1   
Proteomes
UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000037510    + More
PRIDE
H9JR70   
Pfam
PF00085   Thioredoxin
Interpro
IPR036249   Thioredoxin-like_sf        + More
IPR005746   Thioredoxin       
IPR013766   Thioredoxin_domain       
SUPFAM
SSF52833   SSF52833       
ProteinModelPortal
H9JR70   A0A1E1WBU7   A0A2A4JKI9   A0A2H1WZ26   A0A212ELD0   A0A3G1T1D3   + More
I4DMP2   I4DN74   A0A194PG90   S4PHU7   A0A194R4Y8   A0A0L7LDC3  

Ontologies

KEGG
NA   
GO
GO:0016021   GO:0015035   GO:0045454   GO:0005623   GO:0006662  

Topology

Length:
327
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.77245
Exp number, first 60 AAs:
22.77245
Total prob of N-in:
0.97981
POSSIBLE N-term signal
sequence
inside
1  -  11
TMhelix
12  -  34
outside
35  -  327
 
 

Population Genetic Test Statistics

Pi
151.347676
Theta
137.280368
Tajima's D
0.153205
CLR
0
CSRT
0.412779361031948
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 GPNIDANVTK 100.00 1e-05
27102218 GPNIDANVTK 100.00 1e-05
27102218 AGAEVEKPADFDDGNWEEVPK 100.00 5e-05
26822097 AIQEQVK 100.00 8e-04
26280517 AKDFAEINHGQQISECVITVPGYFNQAER 100.00 8e-04
27102218 IPIVIDDK 100.00 8e-04
28467696 AKDFAGIDCQVIGVSTDSEFSHIAWINTPR 100.00 8e-04
28556443 GPNLDANVTK 100.00 8e-04
26822097 AIQEQVKEFER 100.00 0.001
26280517 DTDFFEK 100.00 0.001
27102218 DTDVEAARPNEDSSEKVK 100.00 0.001
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号