Gene

KWMTBOMO06759

Pre Gene Modal

BGIBMGA012028

Annotation

PREDICTED:_pentatricopeptide_repeat-containing_protein_1?_mitochondrial_[Plutella_xylostella]

Location

Bomo_Chr11(+):14381252-14385138      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.018

CDS

ATGGCATGTACTAATCTGCTGAGAAATATTAAAACAATACATTTTATTCGACGTAGCTTTTTCTCAACTTCGATTATACAAAATAATCAATCTAAATATCCCAAACATACAGAATTCCGAACAGAACACAATCAATTGGTGTATTTAGATGATCCTGATAAGTTTGGGACATTGTCCGGTTTCAAAATACAGGACGAAAAACTTGTAGATGCTGGAGATATAAAAGAAGAAGAATATACACAAAATAAACCCTTACCTGGTAAAAAATTAACCACTAGACAGTATGCTGATTTAATTAAACAATACATAAAGCATAAAAGATTAAAAGAAGCTATTGATGTATTGGAGGTGAGAATGCTACAGGAAGATAAAGTGAAACCGGAAAATTATATATTCAACATATTAATTGGTGCGTGTGCTGATGTAGGTTACACAAAAAAAGCATTTCGTTTGTTCAATGAAATGAAAGCACGAGGACTAAAACCTACAGGTGATACTTATACCTGTTTGTTTCATGCATGTAGCAAAAGTCCATGGGCATCGGATGGTTTAAAAAACGCTAAACATCTTCGAGAACATATGATTTTAAAAGGAATAGAACCAAATCTGACGAATTATAATGCAATGATAAAGGCATTTGGATGTTGTGGTGATTTGGTTACGGCTTTCAGAATAGTTGATGAAATGGTAACTAAGAAAATAAAAATTAGAGTTCATACTTTTAACCATCTGCTACAAGCTTGTATATCAGATAAAAATAATGGACTGAGGCATGCTCTGATTGTATGGAGAAAAATGTTGAATGTTAGAGAGAAACCTAATATTTACTCTTTCAATTTAATGCTTAAATGTGTGAAAGACTGCAATTTGGGAACTAAAGAGGACATTGAAGAATTAGTTGGTGCTGTCAAAGGAAAAACATTAAAAGGAAGCAAAAATGATATGCTAGAGACGCAAAATATTGACTCGCAAGAGTTAAAATTATTGCAAGATCCTAAAAGTCCTCCTGAAAAAATTAGAAAAGACCATATTGATTCTCAAAAAAGTATTAATGGTAGTAACAAAATGAATATGCAAAATTCAGATGCAGTAGAAACAACAGATTTAATGATTACAGAAAACAAAGCAAAGATAACAATACAATTAGTAGATAATTTAAAAAATACCAGCAAAGAACAAAGAAATGTACCTAATTTATTGTCAAAGGAAATTAATATGCACCATATATTAGCTTTACAAGAAGTGCATTCATTACAAGATAAGTTTACTGTAATAGGTGGACAAGAAGATTTCCTTGAAGAAATGAGTGCTTATTCAGTTAAACCAGACATTAAAACGTTTACACAAATGCTCCCATTATTGGATAATACAACAGAGGCTGAAAATAAACTACTTCATACTATGCACAATATGAAGATACGAGCAGATATTGACTTCTACAACATGTTAATAAAGAAAAGGTGTTTAAGGCTGGATTATGATGCTGCTAAAGCTGTTAAAAAGATAATAAAAAAGGAAAGTGAAATTCGGAAACGTTTGTATCCAGATAATAAAAAGAAGAGACTAAATCTTAATATAATGTCTTATGGCGTCTTGGCAATGGCTTGTAAAACTAAAGAAGATGCAGAAATCCTCCTAGCTGATATGAGACAAGAACAACTTAAGGTGAATATAGAAATTCTTGGAGCTCTATTGAAACATGGCATCGTAAATTATCGATTCGACTACGTTCTGTACGTATTGAATATTGTAAAAGACGAAAAGGTTCCTGTTAGTGATTTGTTTTTAAAGAATTTAGAGGACTTCAATGAAAAATGTATGAAAATTATACAGCAGAATGAAAACAGTCATCGCAAATATTCCAATTCTTTCGAAACAGCTTACAATAAATTCTCGAAGATTTATACTAATTGGTTAAGAGAAGTAAACATTCATGAAGCTTTGAAGCAAGAACATCCTTGGGAACAATTTAAGACTTCCAGCCCAGAAACAGTGCAAAGGCAAAATATTAAAATCATCGAACCAAAGAGATTTAACAAAAGAAATCGTAAATATGTACCATATGTTCCTAAGATATAA

Protein

MACTNLLRNIKTIHFIRRSFFSTSIIQNNQSKYPKHTEFRTEHNQLVYLDDPDKFGTLSGFKIQDEKLVDAGDIKEEEYTQNKPLPGKKLTTRQYADLIKQYIKHKRLKEAIDVLEVRMLQEDKVKPENYIFNILIGACADVGYTKKAFRLFNEMKARGLKPTGDTYTCLFHACSKSPWASDGLKNAKHLREHMILKGIEPNLTNYNAMIKAFGCCGDLVTAFRIVDEMVTKKIKIRVHTFNHLLQACISDKNNGLRHALIVWRKMLNVREKPNIYSFNLMLKCVKDCNLGTKEDIEELVGAVKGKTLKGSKNDMLETQNIDSQELKLLQDPKSPPEKIRKDHIDSQKSINGSNKMNMQNSDAVETTDLMITENKAKITIQLVDNLKNTSKEQRNVPNLLSKEINMHHILALQEVHSLQDKFTVIGGQEDFLEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMHNMKIRADIDFYNMLIKKRCLRLDYDAAKAVKKIIKKESEIRKRLYPDNKKKRLNLNIMSYGVLAMACKTKEDAEILLADMRQEQLKVNIEILGALLKHGIVNYRFDYVLYVLNIVKDEKVPVSDLFLKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQFKTSSPETVQRQNIKIIEPKRFNKRNRKYVPYVPKI

Uniprot

A0A2A4JMH5   A0A2H1WZ37   A0A212ELB0   A0A194R8V0   A0A194PKT8   A0A0L7LE76   + More
A0A1S4FCT3   Q176Y9   A0A0T6B1Q6   A0A182GXS9   A0A182NKG0   A0A182G5T5   A0A182R726   A0A182Q6L1   A0A182JX20   B0VZJ7   U5EGC6   A0A182PJT2   A0A182SG24   A0A084W446   A0A182XM40   A0A182MB69   A0A182VEF3   A0A182KPA7   A0A182I1M4   A0A182YR13   Q7Q645   A0A182UJB5   A0A182IQQ0   A0A182WHN6   A0A1J1J4U0   A0A1B0CB15   A0A182FD49   A0A2J7QW91   A0A1W4WRQ8   D6WG40   A0A1Y1K6Z0   A0A1B6FRY6   B4IWZ9   A0A336K072   A0A1B0CYP6   B4KWZ3   A0A2H8TDJ6   Q29FC7   B4H1I3   A0A1I8QCC8   A0A0A1WPX3   A0A2M4APC2   A0A2M4APC0   U4U9Z0   A0A2M4APG0   A0A3B0KTE5   A0A1A9VN20   B4LFQ0   W5JIQ6   A0A1A9X0I1   A0A1W4URV1   A0A1I8MYB1   A0A1A9ZMI7   B4HUD5   N6U5U9   A0A0K8W507   A0A1B0AQD1   A0A1A9XIM0   A0A1B0GGK1   B3M406   W8BSS3   B4MXF4   A0A0J9RQR6   B4QRI2   Q9VRJ7   B4PIE1   B3NG92   A0A2T7Q0Z1   A0A146LMM2   A0A146LV43   A0A0P5ED92   A0A023F079   T1HPW7   A0A0N8EB12   A0A0P6F6R5   A0A0V0G849   A0A0P5UDL2   A0A0N8BEL4   A0A0P4ZMD3   A0A0P5IF28   A0A0P5DDN6   A0A0P5JDR9   A0A0P5SKX6   A0A0P5TR25   A0A0N8CUR3   A0A0P5T0C0   A0A0P5DM19   A0A0P4ZSQ7   A0A0P5RU21   A0A0P5NC12   A0A3R7M0S5  

Pubmed

22118469    26354079    26227816    17510324    26483478    24438588    + More
20966253    25244985    12364791    14747013    17210077    18362917    19820115    28004739    17994087    15632085    25830018    23537049    20920257    23761445    25315136    24495485    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    26823975    25474469   

EMBL

NWSH01001104    PCG72600.1    ODYU01012166    SOQ58333.1    AGBW02014084    OWR42290.1    + More
KQ460779    KPJ12301.1    KQ459606    KPI91715.1    JTDY01001566    KOB73511.1    CH477380    EAT42220.1    LJIG01016199    KRT81318.1    JXUM01020768    KQ560581    KXJ81811.1    JXUM01043912    KQ561380    KXJ78776.1    AXCN02000399    DS231814    EDS31734.1    GANO01003498    JAB56373.1    ATLV01020275    KE525297    KFB44990.1    AXCM01004514    APCN01000069    AAAB01008960    EAA11660.4    CVRI01000069    CRL06978.1    AJWK01004728    NEVH01009766    PNF32841.1    KQ971319    EFA00524.1    GEZM01090985    JAV57144.1    GECZ01016819    JAS52950.1    CH916366    EDV96305.1    UFQS01000040    UFQT01000040    SSW98139.1    SSX18525.1    AJVK01020262    AJVK01020263    AJVK01020264    CH933809    EDW18614.2    GFXV01000354    MBW12159.1    CH379067    EAL31328.1    CH479202    EDW30160.1    GBXI01013586    JAD00706.1    GGFK01009299    MBW42620.1    GGFK01009137    MBW42458.1    KB632256    ERL90759.1    GGFK01009338    MBW42659.1    OUUW01000012    SPP87168.1    CH940647    EDW69277.1    ADMH02001390    ETN62679.1    CH480817    EDW50556.1    APGK01041328    KB740993    ENN76016.1    GDHF01006172    JAI46142.1    JXJN01001810    CCAG010020395    CH902618    EDV40368.1    GAMC01002135    JAC04421.1    CH963876    EDW76723.1    CM002912    KMY97704.1    CM000363    EDX09293.1    AE014296    BT011031    AAF50798.1    AAR30191.1    CM000159    EDW93483.1    CH954178    EDV50993.1    PZQS01000001    PVD39344.1    GDHC01010989    JAQ07640.1    GDHC01007674    JAQ10955.1    GDIP01143078    JAJ80324.1    GBBI01003819    JAC14893.1    ACPB03001903    GDIQ01044372    JAN50365.1    GDIQ01052562    JAN42175.1    GECL01001833    JAP04291.1    GDIP01131748    JAL71966.1    GDIQ01185347    JAK66378.1    GDIP01211275    JAJ12127.1    GDIQ01222049    JAK29676.1    GDIP01162935    JAJ60467.1    GDIQ01201001    JAK50724.1    GDIP01138489    JAL65225.1    GDIP01140736    JAL62978.1    GDIP01096943    JAM06772.1    GDIP01139594    JAL64120.1    GDIP01157736    JAJ65666.1    GDIP01210127    JAJ13275.1    GDIQ01097140    JAL54586.1    GDIQ01147370    JAL04356.1    QCYY01002655    ROT68584.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    UP000008820    + More
UP000069940    UP000249989    UP000075884    UP000075900    UP000075886    UP000075881    UP000002320    UP000075885    UP000075901    UP000030765    UP000076407    UP000075883    UP000075903    UP000075882    UP000075840    UP000076408    UP000007062    UP000075902    UP000075880    UP000075920    UP000183832    UP000092461    UP000069272    UP000235965    UP000192223    UP000007266    UP000001070    UP000092462    UP000009192    UP000001819    UP000008744    UP000095300    UP000030742    UP000268350    UP000078200    UP000008792    UP000000673    UP000091820    UP000192221    UP000095301    UP000092445    UP000001292    UP000019118    UP000092460    UP000092443    UP000092444    UP000007801    UP000007798    UP000000304    UP000000803    UP000002282    UP000008711    UP000245119    UP000015103    UP000283509   

PRIDE

Q9VRJ7   

Pfam

PF13041   PPR_2        + More
PF12854   PPR_1
PF13812   PPR_3
PF17177   PPR_long
PF01535   PPR

Interpro

IPR002885   Pentatricopeptide_repeat        + More
IPR011990   TPR-like_helical_dom_sf       
IPR033443   PPR_long       
IPR011009   Kinase-like_dom_sf       
IPR022495   Bud32       

SUPFAM

SSF56112   SSF56112       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A2A4JMH5   A0A2H1WZ37   A0A212ELB0   A0A194R8V0   A0A194PKT8   A0A0L7LE76   + More
A0A1S4FCT3   Q176Y9   A0A0T6B1Q6   A0A182GXS9   A0A182NKG0   A0A182G5T5   A0A182R726   A0A182Q6L1   A0A182JX20   B0VZJ7   U5EGC6   A0A182PJT2   A0A182SG24   A0A084W446   A0A182XM40   A0A182MB69   A0A182VEF3   A0A182KPA7   A0A182I1M4   A0A182YR13   Q7Q645   A0A182UJB5   A0A182IQQ0   A0A182WHN6   A0A1J1J4U0   A0A1B0CB15   A0A182FD49   A0A2J7QW91   A0A1W4WRQ8   D6WG40   A0A1Y1K6Z0   A0A1B6FRY6   B4IWZ9   A0A336K072   A0A1B0CYP6   B4KWZ3   A0A2H8TDJ6   Q29FC7   B4H1I3   A0A1I8QCC8   A0A0A1WPX3   A0A2M4APC2   A0A2M4APC0   U4U9Z0   A0A2M4APG0   A0A3B0KTE5   A0A1A9VN20   B4LFQ0   W5JIQ6   A0A1A9X0I1   A0A1W4URV1   A0A1I8MYB1   A0A1A9ZMI7   B4HUD5   N6U5U9   A0A0K8W507   A0A1B0AQD1   A0A1A9XIM0   A0A1B0GGK1   B3M406   W8BSS3   B4MXF4   A0A0J9RQR6   B4QRI2   Q9VRJ7   B4PIE1   B3NG92   A0A2T7Q0Z1   A0A146LMM2   A0A146LV43   A0A0P5ED92   A0A023F079   T1HPW7   A0A0N8EB12   A0A0P6F6R5   A0A0V0G849   A0A0P5UDL2   A0A0N8BEL4   A0A0P4ZMD3   A0A0P5IF28   A0A0P5DDN6   A0A0P5JDR9   A0A0P5SKX6   A0A0P5TR25   A0A0N8CUR3   A0A0P5T0C0   A0A0P5DM19   A0A0P4ZSQ7   A0A0P5RU21   A0A0P5NC12   A0A3R7M0S5  

PDB

5I9G     E-value=6.26063e-17,     Score=216

KEGG

101741183    K17710 pentatricopeptide repeat domain-containing protein 1 | (RefSeq) pentatricopeptide repeat-cont

GO

GO:0004674   GO:0000049   GO:0042780   GO:0005759   GO:0005739   GO:0003723   GO:0016021   GO:0005515  

Length:

692

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.17116

Exp number, first 60 AAs:

0.00093

Total prob of N-in:

0.00948

outside

1  -  692

 

 

Pi

132.521658

Theta

145.618358

Tajima's D

-0.647463

CLR

1.073967

CSRT

0.214789260536973

Interpretation

Uncertain