Gene

KWMTBOMO06752

Pre Gene Modal

BGIBMGA012026

Annotation

PREDICTED:_thyroglobulin-like_[Bombyx_mori]

Location

Bomo_Chr11(+):14314602-14320810      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 4.752

CDS

ATGTATTTTATAAATACTCATTTATCGAGGACCTGGATAGTGTTAGCATTGTGTTTCTATTGGTTTTGTGTGGTGAATTCGCAGTGTCAAGTCGCGCAAACCTGTGTCCACGACGCCACAGTTTCTGATTGTCTTGCTGGCGAAGTTTTGGCACCAAATGTACACATTTTCAATTGTTGTCCTGCGTGTCGACTACCTGGCCCGACTGATCCGGGCGATGGTACGGAGTGCAAACCACCTTCTAGCTGTTTACCTGATGGTTCTTTTGGACCAGTACAATGCAAAGGCGATATGTTCACAGGACGGTGTTTCTGTTCCGATAAAGATGGAAACAGAATATTTGGACAAATGTGGCGGAATGAAGCTAGTGACATGAGTTGCGCATGTAGCAGAAGACGAGCCGAAATAGAAGCATCGGGAAGAAAATTTGTAACACTACACTGTACTGGTAACGGTGATTATGAGCCCTTACAATGTGATGATGGGCTATGCTGGTGTGCAAATGTTAAAACGGGACAGCCAACGGTCACCCCAGTTCCGCAAGAAGATATGAAGCGTTTGCCGTGCTATAGTGCGGGAGTGGCAGGCGAGCAATACTTGCGAAGATGTGAAAGTTTAGTTCAGTCAATGGCAACGATTAATCAAGAGCAAGCAGAACATGGCACTAAGTTTTTCGGTAACCCCACGACATTCTGTGCTTATGATGGAAGCTATGGACCGTTTCAAATACGGAACGGAGTTGCATACTGTACTGGAAGGGATGGTGAGATACTGGGTTCGTGGCAAGTTATAAGCAGTGAAATGTCTAGAATGAATTGCAATTGTGCTCGCGACACCATGATATATTTCCCAGAACGGGGCATGACTGTGACGGAAATATGTTTGGCTAATGGCAACTACCAACCGCATCAGAACGTTGGAGACGTATACTATTGTGTTGATACTGACGGTTACCCGATAGAGTTTCTAGATGAATGGCCTTCGGATAGATGTGCCAGTTACGCCTGA

Protein

MYFINTHLSRTWIVLALCFYWFCVVNSQCQVAQTCVHDATVSDCLAGEVLAPNVHIFNCCPACRLPGPTDPGDGTECKPPSSCLPDGSFGPVQCKGDMFTGRCFCSDKDGNRIFGQMWRNEASDMSCACSRRRAEIEASGRKFVTLHCTGNGDYEPLQCDDGLCWCANVKTGQPTVTPVPQEDMKRLPCYSAGVAGEQYLRRCESLVQSMATINQEQAEHGTKFFGNPTTFCAYDGSYGPFQIRNGVAYCTGRDGEILGSWQVISSEMSRMNCNCARDTMIYFPERGMTVTEICLANGNYQPHQNVGDVYYCVDTDGYPIEFLDEWPSDRCASYA

Uniprot

A0A1Z2RRK1   A0A194R8U5   A0A194PKT3   A0A0L7LKU3   A0A212ELB8   A0A2H1X1F2   + More
A0A2A4JRC2   A0A1Q3FY93   A0A182GND1   Q17IS7   A0A1Q3FHF9   A0A182H4V9   B0WKC4   A0A084WA94   A0A182U846   A0A182J145   A0A182KPN3   A0A1I8JTS3   A7UTY7   A0A182UYY4   A0A182QSP7   A0A182FHD1   A0A182X703   Q17IS6   A0A182WKR0   A0A182PH57   A0A182RZQ5   A0A182YD27   A0A1S4F195   W5JQC5   A0A2J7QRD9   A0A182IPE9   A0A182KPN2   A7UTY8   W5JPZ4   A0A182VLC3   A0A182NIN9   T1E9L0   A0A182UCM0   A0A1I8JTT5   A0A336MMA9   A0A139WFB4   A0A336MXI8   A0A182K001   A0A2P8YA19   U4UUJ1   A0A1J1II56   A0A336MII2   N6TPW3   A0A182TDN3   A0A0N8ACJ2   A0A2J7QRD6   A0A0P5C5J4   A0A0P5C4Z5   A0A0N8D635   A0A0P5D7Y1   A0A0P5DWP1   A0A0N8D5L0   A0A0P4Z054   A0A0P5CDJ2   A0A0P5Z516   A0A0N8CN36   A0A0P6H6G1   A0A0P5X9S4   A0A0P6C5Z6   A0A1D2NAC8   A0A0N8EGV2   A0A1D2NAE5   A0A0P4YEZ9   A0A0P5YK26   A0A226EI35   A0A226EDL9   A0A0P5K226   A0A0N8D518   B7P6S2   V5H507   D6WQ56   Q16UL9   A0A1B0CW87  

Pubmed

28605547    26354079    26227816    22118469    26483478    17510324    + More
24438588    20966253    12364791    14747013    17210077    25244985    20920257    23761445    18362917    19820115    29403074    23537049    27289101    25765539   

EMBL

KY938833    ASA46474.1    KQ460779    KPJ12296.1    KQ459606    KPI91710.1    + More
JTDY01000759    KOB75989.1    AGBW02014084    OWR42286.1    ODYU01012727    SOQ59175.1    NWSH01000797    PCG74154.1    GFDL01002542    JAV32503.1    JXUM01076153    KQ562928    KXJ74817.1    CH477237    EAT46561.1    GFDL01008083    JAV26962.1    JXUM01025802    JXUM01025803    JXUM01025804    JXUM01025805    JXUM01025806    JXUM01025807    JXUM01025808    KQ560734    KXJ81088.1    DS231969    EDS29715.1    ATLV01022053    KE525327    KFB47138.1    APCN01000100    AAAB01008960    EDO63762.1    AXCN02000418    EAT46562.1    ADMH02000830    ETN64939.1    NEVH01011914    PNF31135.1    EDO63763.1    ETN64940.1    GAMD01001252    JAB00339.1    UFQT01001510    SSX30875.1    KQ971352    KYB26622.1    UFQT01002418    SSX33413.1    PYGN01000765    PSN41091.1    KB632375    ERL93841.1    CVRI01000050    CRK99450.1    UFQT01001052    SSX28643.1    APGK01025893    APGK01025894    KB740605    KI209968    ENN80043.1    ERL96118.1    GDIP01160801    JAJ62601.1    PNF31133.1    GDIP01175892    JAJ47510.1    GDIP01175893    JAJ47509.1    GDIP01065167    JAM38548.1    GDIP01175895    JAJ47507.1    GDIP01151503    JAJ71899.1    GDIP01066567    JAM37148.1    GDIP01231996    LRGB01001061    JAI91405.1    KZS13578.1    GDIP01175894    JAJ47508.1    GDIP01049515    JAM54200.1    GDIP01115559    JAL88155.1    GDIQ01033731    JAN61006.1    GDIP01075267    JAM28448.1    GDIP01008598    JAM95117.1    LJIJ01000120    ODN02213.1    GDIQ01028052    JAN66685.1    ODN02217.1    GDIP01231995    JAI91406.1    GDIP01056617    JAM47098.1    LNIX01000004    OXA56246.1    OXA55675.1    GDIQ01192058    JAK59667.1    GDIP01068103    JAM35612.1    ABJB010761899    ABJB011085371    DS647609    EEC02294.1    GANP01012414    JAB72054.1    KQ971354    EFA06927.2    CH477618    EAT38224.1    AJWK01032005   

Proteomes

UP000053240    UP000053268    UP000037510    UP000007151    UP000218220    UP000069940    + More
UP000249989    UP000008820    UP000002320    UP000030765    UP000075902    UP000075880    UP000075882    UP000075840    UP000007062    UP000075903    UP000075886    UP000069272    UP000076407    UP000075920    UP000075885    UP000075900    UP000076408    UP000000673    UP000235965    UP000075884    UP000007266    UP000075881    UP000245037    UP000030742    UP000183832    UP000019118    UP000076858    UP000094527    UP000198287    UP000001555    UP000092461   

PRIDE

V5H507   

Pfam

PF00086   Thyroglobulin_1        + More
PF06870   RNA_pol_I_A49

Interpro

IPR036857   Thyroglobulin_1_sf        + More
IPR000716   Thyroglobulin_1       
IPR001368   TNFR/NGFR_Cys_rich_reg       
IPR009668   RNA_pol-assoc_fac_A49-like       
IPR009030   Growth_fac_rcpt_cys_sf       

SUPFAM

SSF57610   SSF57610        + More
SSF57184   SSF57184       

Gene 3D

4.10.800.10    

CDD

cd00191  TY

ProteinModelPortal

A0A1Z2RRK1   A0A194R8U5   A0A194PKT3   A0A0L7LKU3   A0A212ELB8   A0A2H1X1F2   + More
A0A2A4JRC2   A0A1Q3FY93   A0A182GND1   Q17IS7   A0A1Q3FHF9   A0A182H4V9   B0WKC4   A0A084WA94   A0A182U846   A0A182J145   A0A182KPN3   A0A1I8JTS3   A7UTY7   A0A182UYY4   A0A182QSP7   A0A182FHD1   A0A182X703   Q17IS6   A0A182WKR0   A0A182PH57   A0A182RZQ5   A0A182YD27   A0A1S4F195   W5JQC5   A0A2J7QRD9   A0A182IPE9   A0A182KPN2   A7UTY8   W5JPZ4   A0A182VLC3   A0A182NIN9   T1E9L0   A0A182UCM0   A0A1I8JTT5   A0A336MMA9   A0A139WFB4   A0A336MXI8   A0A182K001   A0A2P8YA19   U4UUJ1   A0A1J1II56   A0A336MII2   N6TPW3   A0A182TDN3   A0A0N8ACJ2   A0A2J7QRD6   A0A0P5C5J4   A0A0P5C4Z5   A0A0N8D635   A0A0P5D7Y1   A0A0P5DWP1   A0A0N8D5L0   A0A0P4Z054   A0A0P5CDJ2   A0A0P5Z516   A0A0N8CN36   A0A0P6H6G1   A0A0P5X9S4   A0A0P6C5Z6   A0A1D2NAC8   A0A0N8EGV2   A0A1D2NAE5   A0A0P4YEZ9   A0A0P5YK26   A0A226EI35   A0A226EDL9   A0A0P5K226   A0A0N8D518   B7P6S2   V5H507   D6WQ56   Q16UL9   A0A1B0CW87  

KEGG

101746642    no KO assigned | (RefSeq) thyroglobulin-like

GO

GO:0005736   GO:0006360   GO:0003677   GO:0003899   GO:0006351   GO:0005634  

PANTHER

PTHR14440  

SignalP

Position:   1 - 27,         Likelihood:  0.968466

 

 

Length:

335

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.32560999999998

Exp number, first 60 AAs:

4.32512

Total prob of N-in:

0.18311

outside

1  -  335

 

 

Pi

186.460712

Theta

179.341249

Tajima's D

0.500998

CLR

0.362196

CSRT

0.517574121293935

Interpretation

Uncertain