Gene

KWMTBOMO06747

Pre Gene Modal

BGIBMGA012022

Annotation

PREDICTED:_uncharacterized_protein_LOC105842523_[Bombyx_mori]

Location

Bomo_Chr11(+):14162622-14163999      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 2.23

CDS

ATGAATCGTGTATCGGTCGAAAGGTCAGTTCACGGCTGCGGGCCGACCCTCAGCCCGCGATCGAATGGTCATCCCATTGCTGTTCAGCCTCAACCACAGGGCCTCATCGTCGAGACAGGCAATGGCGCGAGCGTCCTCCAACTGCCAGCGACGACCCTAGAACAAATAAGACACATAGCCACAGACCCCGGTGCGTCTACGCTTCGTCTGCCTCCGCCAGCAACCGAAACCCCGATCGGGTCACGCGAGCTTGACTTCGACCTGTGCTACGTGTGCAAGCACTGCAAAGTTGCGTTCCCGTCGCCCGCGCCCCTGCAGATACATCAGGCTCGATCGTGTTACGCGGGCCGAGAGGCAACTCGCGGCGTCATCCGCGTGATCCAACCCGCACTGGAATGCCGCTCGTGTCCCGGGGAACGGTTCCGTACAGCTATGGACTTCCGGCGCCACGCAGAAACAGAAACGCATATTCGGAATATGGGACTGCCGCCTCCGATACCCGCTCAACCGGAAGCTTTAACGCACGAGATGGAAGACGTCGTCAATCAAATTACTTTATTGGCGGCTCGTGCAGCGCAGGACTCCGCACCGAAGGATCCCAATGCCAACTTCTGTGTGCCCGGGCCTCGCTTCCAACCGCCCGGCGAGCTTCCGATAGCGAGCGCCGGCCACTAA

Protein

MNRVSVERSVHGCGPTLSPRSNGHPIAVQPQPQGLIVETGNGASVLQLPATTLEQIRHIATDPGASTLRLPPPATETPIGSRELDFDLCYVCKHCKVAFPSPAPLQIHQARSCYAGREATRGVIRVIQPALECRSCPGERFRTAMDFRRHAETETHIRNMGLPPPIPAQPEALTHEMEDVVNQITLLAARAAQDSAPKDPNANFCVPGPRFQPPGELPIASAGH

Uniprot

H9JR62   A0A2H1W0R2   A0A2A4JRD1   A0A0L7LVM5   A0A194R4X3   A0A194PG75   + More
A0A2A4JRS1   N6TV75   U4UQI3   A0A1W4WY59   A0A1W4X905   A0A139WK81   A0A1Y1MTX5   A0A139WKI3   E0VGR3   A0A2P8Y7S6   A0A2P8YN78   A0A088AMP5   A0A310SIP4   A0A088AQV5   A0A195CWX8   A0A0J7JWR2   A0A026WIX2   A0A3L8DE75   A0A195EZV5   A0A1B6E2S3   A0A1B6C1I5   A0A0L7R4V8   A0A1B6LT97   A0A2S2QHE3   A0A2S2Q8Z4   J9LCC7  

Pubmed

19121390    26227816    26354079    23537049    18362917    19820115    + More
28004739    20566863    29403074    24508170    30249741   

EMBL

BABH01016420    ODYU01005628    SOQ46668.1    NWSH01000797    PCG74164.1    JTDY01000007    + More
KOB79490.1    KQ460779    KPJ12290.1    KQ459606    KPI91704.1    PCG74163.1    APGK01050913    KB741178    ENN73170.1    KB632325    ERL92391.1    KQ971330    KYB28326.1    GEZM01021158    JAV89112.1    KYB28327.1    DS235151    EEB12569.1    PYGN01000825    PSN40317.1    PYGN01000476    PSN45683.1    KQ762903    OAD55262.1    KQ977185    KYN05057.1    LBMM01024200    KMQ82608.1    KK107231    EZA55049.1    QOIP01000009    RLU18472.1    KQ981905    KYN33409.1    GEDC01005104    JAS32194.1    GEDC01029926    JAS07372.1    KQ414657    KOC65878.1    GEBQ01013128    JAT26849.1    GGMS01007918    MBY77121.1    GGMS01004837    MBY74040.1    ABLF02041231   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000019118    + More
UP000030742    UP000192223    UP000007266    UP000009046    UP000245037    UP000005203    UP000078542    UP000036403    UP000053097    UP000279307    UP000078541    UP000053825    UP000007819   

PRIDE

H9JR62   

Pfam

PF00096   zf-C2H2        + More
PF00046   Homeodomain

Interpro

IPR013087   Znf_C2H2_type        + More
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR017970   Homeobox_CS       
IPR036236   Znf_C2H2_sf       
IPR009057   Homeobox-like_sf       
IPR001356   Homeobox_dom       

SUPFAM

SSF46689   SSF46689        + More
SSF57667   SSF57667       

CDD

cd00086  homeodomain

ProteinModelPortal

H9JR62   A0A2H1W0R2   A0A2A4JRD1   A0A0L7LVM5   A0A194R4X3   A0A194PG75   + More
A0A2A4JRS1   N6TV75   U4UQI3   A0A1W4WY59   A0A1W4X905   A0A139WK81   A0A1Y1MTX5   A0A139WKI3   E0VGR3   A0A2P8Y7S6   A0A2P8YN78   A0A088AMP5   A0A310SIP4   A0A088AQV5   A0A195CWX8   A0A0J7JWR2   A0A026WIX2   A0A3L8DE75   A0A195EZV5   A0A1B6E2S3   A0A1B6C1I5   A0A0L7R4V8   A0A1B6LT97   A0A2S2QHE3   A0A2S2Q8Z4   J9LCC7  

KEGG

105842523    no KO assigned | (RefSeq) uncharacterized LOC105842523

GO

GO:0003676   GO:0008270   GO:0006355   GO:0043565   GO:0005634   GO:0000122   GO:0000978   GO:0044212   GO:0045893   GO:0003677   GO:0046872  

Subcellular location

Nucleus  

Length:

224

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.15627

outside

1  -  224

 

 

Pi

159.152557

Theta

162.492661

Tajima's D

-0.351213

CLR

0.096294

CSRT

0.276786160691965

Interpretation

Uncertain