Gene

KWMTBOMO06735  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012016

Annotation

putative_ATP-dependent_RNA_helicase_DDX17_[Operophtera_brumata]

Location

Bomo_Chr11(+):13253473-13255405      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.583 Mitochondrial   Reliability : 1.193 Nuclear   Reliability : 1.868

CDS

ATGTCTTGCTTGGAAAAAGAACGAAAACCAATGGTACCCGTTAAAAATTTGGATGTTATATTCAGAAGACGGTACGTACCCAATACGCAATATTACTTTGCTAATAGAAAACATGCCCTTAATGAAGTCAAAGAAAGGCCTGACCGTAGTCGGCCCTTCAGAGTGCCGCGTTCAGAAAAACTATTGTCATATATAAAATATAGTGAGCGGAAAGAAAAATTAAATGATCTGCATAGACTGAAATTGCCGGTGCGTTTTAAAGATAATTTGAAAATAGCAGCATCCAGAGATATATCAAGAAGACTCTTCGTACCCGAACCCCTCGATGATGTTAGAGCTGTAGTTGAGATACATCCTGAGTTCTACAAAGTTATTGAAGGTCGTCCTACGCGATGCTTAGACGATATTAAAGTCTACGTCAATAATATTCGGGCTTATGCTATGAATCGACAACAAATAGGATATCGACGTGACTTGGTCATGAAAATACAAGAAAATGCTGTGGAAGAAACTGTACAGTACGAGCGTATAGTAGAAAAATTGAAAGAGCACATTAAGAACTTTGAAAAGTTTTTGACTGAAGATTATAAAAATGCTTGCAACAAAGTATCCAAAGCTGAGAAAGTTTACAGTGATTTGCTATCAAAAAACTCAGAGTTTCTTGCTTACATATCCTCACTGACAATATTGAGTAACGTTCTATTTAAATTAGACGCTATTCGAAGTGTCTTAAAAGTTTACAGAAGTTTCTTAATTTTTATCGCCCCGATCTCATGGCGGCAACAAAACGATGAAAATTTGAGAGGTAAAATACAGTCGATACAGTTTGAGTCTGGAATATTCGTTACTGATAACGATTTAGTTGAATCGCTGGATATTGATAAAATGATTGAATTTGCTAAAAATGAACTTAGTAATCCACAGCCAGCAACATTGTACTTTAAAAAACCCGAGGAATTAAAGTACTTGTTTAGAACAATGGAGATACAAAGTAGAGAATATTTGACACAGTTATCAAAAACCGATGCCCCTAATCGATTGTTACAAGAACGTATGAAGCAATTAAAACAAGCTACTAAACAGGAATTAGATTATTTTCAGTTCTACATCGATAGCATTAATAAGGAAATCGAAAGGGAAAGGTATAACGAAACCTACTTACAAGACAAGTTTTTTCGAATATTAAATGAAACTTTTTTCGAAAACGTCGCCAGTCCTAGTACACTAAAACTTAAAATTTGTGTTGAGTATGTTTACGAAGAAATATTTGGTAAATGCGAGGAAGGCCATCAGAGTCTACATGATCCCATGAAGATTTTAGAAGTAATGTATGAAGATTACAATTTACGCCTGGACTCCTTAGATTTTAAAATAGTGAATACGGCCCGTAGTGACTTTTTCAGTCAAGATTTGAAGATTATGAAAAATGCGTATAAAGCTCAAAGAGAATTAAGGTCTTTTTGGGAAATGAAAAGTGCTATGAACAAAGCATTTTTAGAACCGCGTAAATACACCAGACCGGTTCTCAAAAAGTTTTTGGATAAAAAGACTAGGTTAGCGTTATTGATCGCTGAAAAGAAAAAATACCAACTGGAAACCGGGGAATGTAATAAAAAGAAAAAATACAAGTTGTCACCTGAAGAAAAAGAGGGTTTACTGTTTTTTACGGAATGGTGTGAAGGTTTGAATCCAGCCCCATATTTAGCTGAATATTACAAATTTATTAAGCCGGCCTTAGAATGGGTACCTCGTTCTTCCGTTTTCCCTTGA

Protein

MSCLEKERKPMVPVKNLDVIFRRRYVPNTQYYFANRKHALNEVKERPDRSRPFRVPRSEKLLSYIKYSERKEKLNDLHRLKLPVRFKDNLKIAASRDISRRLFVPEPLDDVRAVVEIHPEFYKVIEGRPTRCLDDIKVYVNNIRAYAMNRQQIGYRRDLVMKIQENAVEETVQYERIVEKLKEHIKNFEKFLTEDYKNACNKVSKAEKVYSDLLSKNSEFLAYISSLTILSNVLFKLDAIRSVLKVYRSFLIFIAPISWRQQNDENLRGKIQSIQFESGIFVTDNDLVESLDIDKMIEFAKNELSNPQPATLYFKKPEELKYLFRTMEIQSREYLTQLSKTDAPNRLLQERMKQLKQATKQELDYFQFYIDSINKEIERERYNETYLQDKFFRILNETFFENVASPSTLKLKICVEYVYEEIFGKCEEGHQSLHDPMKILEVMYEDYNLRLDSLDFKIVNTARSDFFSQDLKIMKNAYKAQRELRSFWEMKSAMNKAFLEPRKYTRPVLKKFLDKKTRLALLIAEKKKYQLETGECNKKKKYKLSPEEKEGLLFFTEWCEGLNPAPYLAEYYKFIKPALEWVPRSSVFP

Uniprot

H9JR56   A0A0L7L0Y4   A0A212F5S5   A0A2A4KA76   A0A2H1WQ44   A0A194PF95   + More
A0A0N1I7V8   A0A1E1WC92   A0A2A4K8Y9   A0A088AMI0   D6WGB8   A0A067RQ27   A0A2H1WRY2   A0A2P8XMR8   H9JLK7   A0A026X226   A0A3L8DUW9   A0A151WIC2   A0A151IVY0   A0A0N0PCL8   A0A158NYB4   A0A0L7L0T0   A0A151HZW5   A0A194PG65   A0A195FU55   E2BZQ7   A0A2P8YFB6   A0A0N1ITK4   U4U739   N6TDL5   A0A2J7PJR2   A0A1W4XH95   A0A0L7REY0   A0A310S6R7   A0A154P3C5   A0A1B6L842   A0A1B6JBG4   A0A1B6HIA8   E0VTX4   A0A1B6FM39   A0A1B6D8I0   A0A1B6C853   E0VL37   A0A1X7VRI5  

Pubmed

19121390    26227816    22118469    26354079    18362917    19820115    + More
24845553    29403074    24508170    30249741    21347285    20798317    23537049    20566863   

EMBL

BABH01016476    JTDY01003833    KOB68939.1    AGBW02010142    OWR49090.1    NWSH01000021    + More
PCG80693.1    ODYU01010215    SOQ55183.1    KQ459606    KPI91693.1    KQ460499    KPJ14283.1    GDQN01006456    JAT84598.1    PCG80681.1    KQ971329    EFA01145.1    KK852533    KDR21844.1    SOQ55184.1    PYGN01001703    PSN33300.1    BABH01005522    KK107054    EZA61449.1    QOIP01000004    RLU24086.1    KQ983089    KYQ47603.1    KQ980882    KYN11959.1    KPJ14282.1    ADTU01003630    JTDY01003879    KOB68884.1    KQ976709    KYM77055.1    KPI91694.1    KQ981261    KYN44155.1    GL451657    EFN78819.1    PYGN01000642    PSN42933.1    KQ435791    KOX74378.1    KB632100    ERL88852.1    APGK01041748    APGK01041749    APGK01041750    APGK01041751    APGK01041752    KB740997    ENN75838.1    NEVH01024946    PNF16549.1    KQ414608    KOC69388.1    KQ767621    OAD53367.1    KQ434796    KZC05738.1    GEBQ01024433    GEBQ01020098    JAT15544.1    JAT19879.1    GECU01011343    JAS96363.1    GECU01033260    JAS74446.1    DS235774    EEB16830.1    GECZ01018501    JAS51268.1    GEDC01015342    JAS21956.1    GEDC01027684    JAS09614.1    DS235269    EEB14093.1   

Proteomes

UP000005204    UP000037510    UP000007151    UP000218220    UP000053268    UP000053240    + More
UP000005203    UP000007266    UP000027135    UP000245037    UP000053097    UP000279307    UP000075809    UP000078492    UP000005205    UP000078540    UP000078541    UP000008237    UP000053105    UP000030742    UP000019118    UP000235965    UP000192223    UP000053825    UP000076502    UP000009046    UP000007879   

PRIDE

H9JR56    H9JLK7   

Pfam

PF13863   DUF4200        + More
PF00270   DEAD
PF00271   Helicase_C
PF00202   Aminotran_3

Interpro

IPR027417   P-loop_NTPase        + More
IPR025252   DUF4200       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR015424   PyrdxlP-dep_Trfase       
IPR015421   PyrdxlP-dep_Trfase_major       
IPR005814   Aminotrans_3       
IPR015422   PyrdxlP-dep_Trfase_dom1       

SUPFAM

SSF52540   SSF52540        + More
SSF53383   SSF53383       

Gene 3D

3.40.640.10     3.90.1150.10    

CDD

cd00079  HELICc

ProteinModelPortal

H9JR56   A0A0L7L0Y4   A0A212F5S5   A0A2A4KA76   A0A2H1WQ44   A0A194PF95   + More
A0A0N1I7V8   A0A1E1WC92   A0A2A4K8Y9   A0A088AMI0   D6WGB8   A0A067RQ27   A0A2H1WRY2   A0A2P8XMR8   H9JLK7   A0A026X226   A0A3L8DUW9   A0A151WIC2   A0A151IVY0   A0A0N0PCL8   A0A158NYB4   A0A0L7L0T0   A0A151HZW5   A0A194PG65   A0A195FU55   E2BZQ7   A0A2P8YFB6   A0A0N1ITK4   U4U739   N6TDL5   A0A2J7PJR2   A0A1W4XH95   A0A0L7REY0   A0A310S6R7   A0A154P3C5   A0A1B6L842   A0A1B6JBG4   A0A1B6HIA8   E0VTX4   A0A1B6FM39   A0A1B6D8I0   A0A1B6C853   E0VL37   A0A1X7VRI5  

KEGG

101735979    no KO assigned | (RefSeq) uncharacterized LOC101735979

GO

GO:0005524   GO:0004386   GO:0003676   GO:0008483   GO:0030170   GO:0031514  

Length:

589

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0767699999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00414

outside

1  -  589

 

 

Pi

106.524575

Theta

216.466134

Tajima's D

-1.655505

CLR

1767.485284

CSRT

0.0409979501024949

Interpretation

Uncertain