Gene

KWMTBOMO06733  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012013

Annotation

PREDICTED:_ATP-dependent_RNA_helicase_p62-like_[Amyelois_transitella]

Location

Bomo_Chr11(+):13240803-13245064      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.327

CDS

ATGGCTTTAAATGTGCTCACAAGGTTATTAAAACGAAAGGAGTTGTCCAAATTATTACCTTACAAACAACAAATAGTAGAAACAAATGTATTTCACACTCACATTATTCCCAAGGTTCAATATTCTATATTGCACAATCAAATATTAAAAGGTACAAAACTACGAGAGCTACAAATCTTAAGATTTTATTCTGTAAAAACTGAGCAGAAAAAGGAAGATGATGATTACAGAAGTGATAATAGCATTACTGTTATTGGTCAAGATATACCCAGTCCTTTTGTTGACATAGAAGCCAGTGGATTTCCTGAATATATAAAAACATTTCTGAAGATGCAAGGTATCACAAAACCAACTGTGATACAGTCACAGGGATGGCCAATAGCTTTGAGTGGTAAAAACTTTGTGGGTATAGCACAAACAGGTACCGGAAAAACATTGGCTTTTCTTTTACCAGCTGTTGTTCATATTAAAGAAAATAAAGCAAAAAAGGGGCGAGGACCAATTGTTCTGGTTCTTGCCCCAACTAGGGAATTGGCAAGACAAATAGAGCAGGTGGCACAGGATTTTAATGAGCAATTAGGTATACGCTGTGCTTGTATTTACGGTGGAGCAAATAGAAGTAAACAAGCAGCACAGTTACAAGCTGGAGTTGACATAGTAATTGCAACTCCAGGAAGACTGAATGATTTTCTTATTACTAAGACAACAACATTAAGCAGGTGTACATATGTGGTGCTAGATGAAGCGGACCGAATGCTGGATATGGGTTTTGAACCTCAGATACGTCAAGCTTTAGAAGGAGTACCACTAGAGAGGCAAATCCTGATGTTCTCAGCAACATGGCCAAAGGAAGTCCGCACTCTTGCAAAAGATTATTTAGGTGAATTTGTCCAGGTCAATGTTGGTTCTACTGAGTTGTCTGCCAACCGCAACATACAACAAATTGTCCATGTATGTGAACAAGACGAAAAAGCCGAGAAGTTTACAGAGATAATGCATAAAATATCTGGTTTAGGTTTTGGTAAAACATTAGTATTTACAAACACTAAGAAATCTGTGGACTATCTTGAGAGAGTGCTTCGGGGAAATGGATGGCCAGCTCTAGGTATTCATGGGGATAGAACACAACTCCAGAGAGATATGATCATCAACAAATTTAAAACTGGAAAGACTAATATACTAGTAGCTACAGATGTTGCAGCTAGAGGTCTTGATGTTGATGGAGTGACACACGTAGTAAACTATGACTATCCCAATACATCTGAAGATTATATTCACAGAATAGGTAGAACAGGGCGTCAAGATAACAAGGGCATATCTCATTCTATACTCACTGAAGAAAATGCAAGACAGGCAAAGGATTTAATAGAAGTTTTGAAAGAAGCTAAACAGGATATCCCCAAAGAATTGTATGACTTGGCTCGCTCGTTTGACATCACGAAATCCACTGAAAAATTTTACAAAAAGAAAAGCTTCCAGAAGCCGTACAACTTTAGTAATAATGCGAGTAAAAAATGGAACAGATTTAGAAATGATAGATATTACTAA

Protein

MALNVLTRLLKRKELSKLLPYKQQIVETNVFHTHIIPKVQYSILHNQILKGTKLRELQILRFYSVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKAKKGRGPIVLVLAPTRELARQIEQVAQDFNEQLGIRCACIYGGANRSKQAAQLQAGVDIVIATPGRLNDFLITKTTTLSRCTYVVLDEADRMLDMGFEPQIRQALEGVPLERQILMFSATWPKEVRTLAKDYLGEFVQVNVGSTELSANRNIQQIVHVCEQDEKAEKFTEIMHKISGLGFGKTLVFTNTKKSVDYLERVLRGNGWPALGIHGDRTQLQRDMIINKFKTGKTNILVATDVAARGLDVDGVTHVVNYDYPNTSEDYIHRIGRTGRQDNKGISHSILTEENARQAKDLIEVLKEAKQDIPKELYDLARSFDITKSTEKFYKKKSFQKPYNFSNNASKKWNRFRNDRYY

Similarity

Belongs to the DEAD box helicase family.

Uniprot

H9JR53   A0A2A4K9Q0   A0A3S2PJ80   A0A194PKR3   A0A2H1WQD8   A0A0N1IPH2   + More
A0A212F5T7   S4PMV6   A0A0L7L0Y4   A0A1B6BXY9   A0A1B6CV16   A0A0L0BWK4   A0A1B6C9I1   S4PFR6   A0A2H1WYV6   A0A1W4XIA1   A0A3G1T191   A0A139W8D1   A0A1W4WWH6   Q1HQ28   B2DBJ5   A0A194PG60   A0A139W8C8   V9IA90   A0A1W4XHA4   V9I9R9   A0A0L7QNQ4   A0A2A3E1Y1   D3TL05   A0A0N1IHL4   Q1HQ29   B4N2Y4   A0A1A9WBH0   A0A0P5XM62   A0A1B0FEH4   A0A0L7KP20   A0A2A4K913   A0A0P5UPA7   B4K198   I4DR20   A0A0P5SAE0   A0A0P5ZJ69   A0A154P740   A0A0P4YA91   H9JQE0   X1WJ61   A0A158NKG2   B3M9G0   F4W8R3   A0A0P5QD99   A0A1Y1L7K8   B4LF26   E9GQY5   A0A0P5ZRG9   A0A0N8P154   A0A0K8VWN6   A0A1Y1L2P5   A0A3L8D963   A0A195EHE1   A0A2J7QB95   A0A154P170   A0A310SD04   A0A0A9W0F9   A0A2J7QB62   A0A087ZXK7   A0A158P1F8   A0A3B0K2M7   A0A026X2Y0   A0A0P5ED32   A0A0A1WXE6   A0A0P5G919   A0A224YI85   A0A0N8A3A5   A0A0P5YXT2   B5DRG4   B4KZU0   A0A1W4V8W9   A0A0L7R8Q6   A0A1W4UWK9   A0A195D124   A0A162DGK2   A0A067R366   A0A0P4WSG1   A0A1B0GM31   A0A1D1XEY3   E0VL41   A0A0L7R2V8   A0A2A3ET06   V9ILQ7   A0A0P5HZP4   A0A088AS59   A0A0P6B602   A0A2J7QB73   A0A131Z1J7   B4PJT1   A0A0R1DWB6   A0A195F313   A0A034VBD0   B3NFL0  

Pubmed

19121390    26354079    22118469    23622113    26227816    26108605    + More
18362917    19820115    18712529    20353571    17994087    22651552    21347285    21719571    28004739    21292972    30249741    25401762    24508170    25830018    28797301    15632085    24845553    20566863    26830274    17550304    25348373   

EMBL

BABH01016476    NWSH01000021    PCG80696.1    RSAL01000016    RVE52988.1    KQ459606    + More
KPI91690.1    ODYU01010215    SOQ55182.1    KQ460499    KPJ14286.1    AGBW02010142    OWR49088.1    GAIX01003350    JAA89210.1    JTDY01003833    KOB68939.1    GEDC01031146    JAS06152.1    GEDC01020087    JAS17211.1    JRES01001238    KNC24400.1    GEDC01027214    JAS10084.1    GAIX01003907    JAA88653.1    ODYU01012134    SOQ58265.1    MG846898    AXY94750.1    KQ973453    KXZ75521.1    DQ443224    ABF51313.1    AB264678    BAG30754.1    KPI91689.1    KXZ75522.1    JR036777    AEY57391.1    JR036778    AEY57392.1    KQ414851    KOC60199.1    KZ288518    PBC25101.1    EZ422095    ADD18300.1    KPJ14287.1    DQ443223    ABF51312.1    CH964062    EDW78723.2    GDIP01072458    JAM31257.1    CCAG010013880    JTDY01008184    KOB64694.1    PCG80697.1    GDIP01112144    JAL91570.1    CH916887    EDV90436.1    AK404897    BAM20360.1    GDIP01142344    JAL61370.1    GDIP01043664    JAM60051.1    KQ434829    KZC07755.1    GDIP01230427    JAI92974.1    BABH01011897    ABLF02031347    ABLF02031351    ABLF02031356    ABLF02049062    ADTU01018821    ADTU01018822    CH902618    EDV41173.1    GL887908    EGI69554.1    GDIQ01115740    JAL35986.1    GEZM01068283    JAV67047.1    CH940647    EDW69195.1    GL732558    EFX78251.1    GDIP01043665    JAM60050.1    KPU78972.1    GDHF01009026    JAI43288.1    GEZM01068282    JAV67048.1    QOIP01000011    RLU16672.1    KQ978881    KYN27690.1    NEVH01016301    PNF25839.1    KQ434796    KZC05689.1    KQ763581    OAD54947.1    GBHO01042703    GBHO01034983    GBRD01016935    GBRD01016932    JAG00901.1    JAG08621.1    JAG48892.1    PNF25838.1    ADTU01006523    OUUW01000012    SPP87573.1    KK107021    EZA62386.1    GDIP01148155    JAJ75247.1    GBXI01010755    JAD03537.1    GDIQ01266073    JAJ85651.1    GFPF01006231    MAA17377.1    GDIP01186697    JAJ36705.1    GDIP01051760    JAM51955.1    CH379070    EDY74133.1    CH933809    EDW17952.1    KQ414631    KOC67255.1    KQ976986    KYN06610.1    LRGB01001581    KZS11494.1    KK852729    KDR17555.1    GDIP01251427    JAI71974.1    AJVK01023899    AJVK01023900    AJVK01023901    GDJX01026979    JAT40957.1    DS235269    EEB14097.1    KQ414666    KOC65111.1    KZ288186    PBC34810.1    JR050357    AEY61249.1    GDIQ01226493    JAK25232.1    GDIP01019708    JAM84007.1    PNF25833.1    GEDV01004221    JAP84336.1    CM000159    EDW93680.1    KRK01301.1    KQ981852    KYN34965.1    GAKP01019541    GAKP01019540    JAC39412.1    CH954178    EDV50552.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    + More
UP000037510    UP000037069    UP000192223    UP000007266    UP000053825    UP000242457    UP000007798    UP000091820    UP000092444    UP000001070    UP000076502    UP000007819    UP000005205    UP000007801    UP000007755    UP000008792    UP000000305    UP000279307    UP000078492    UP000235965    UP000005203    UP000268350    UP000053097    UP000001819    UP000009192    UP000192221    UP000078542    UP000076858    UP000027135    UP000092462    UP000009046    UP000002282    UP000078541    UP000008711   

PRIDE

H9JR53    Q1HQ28    Q1HQ29    H9JQE0   

Pfam

PF00270   DEAD        + More
PF00271   Helicase_C
PF13863   DUF4200

Interpro

IPR001650   Helicase_C        + More
IPR014001   Helicase_ATP-bd       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR027417   P-loop_NTPase       
IPR025252   DUF4200       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

H9JR53   A0A2A4K9Q0   A0A3S2PJ80   A0A194PKR3   A0A2H1WQD8   A0A0N1IPH2   + More
A0A212F5T7   S4PMV6   A0A0L7L0Y4   A0A1B6BXY9   A0A1B6CV16   A0A0L0BWK4   A0A1B6C9I1   S4PFR6   A0A2H1WYV6   A0A1W4XIA1   A0A3G1T191   A0A139W8D1   A0A1W4WWH6   Q1HQ28   B2DBJ5   A0A194PG60   A0A139W8C8   V9IA90   A0A1W4XHA4   V9I9R9   A0A0L7QNQ4   A0A2A3E1Y1   D3TL05   A0A0N1IHL4   Q1HQ29   B4N2Y4   A0A1A9WBH0   A0A0P5XM62   A0A1B0FEH4   A0A0L7KP20   A0A2A4K913   A0A0P5UPA7   B4K198   I4DR20   A0A0P5SAE0   A0A0P5ZJ69   A0A154P740   A0A0P4YA91   H9JQE0   X1WJ61   A0A158NKG2   B3M9G0   F4W8R3   A0A0P5QD99   A0A1Y1L7K8   B4LF26   E9GQY5   A0A0P5ZRG9   A0A0N8P154   A0A0K8VWN6   A0A1Y1L2P5   A0A3L8D963   A0A195EHE1   A0A2J7QB95   A0A154P170   A0A310SD04   A0A0A9W0F9   A0A2J7QB62   A0A087ZXK7   A0A158P1F8   A0A3B0K2M7   A0A026X2Y0   A0A0P5ED32   A0A0A1WXE6   A0A0P5G919   A0A224YI85   A0A0N8A3A5   A0A0P5YXT2   B5DRG4   B4KZU0   A0A1W4V8W9   A0A0L7R8Q6   A0A1W4UWK9   A0A195D124   A0A162DGK2   A0A067R366   A0A0P4WSG1   A0A1B0GM31   A0A1D1XEY3   E0VL41   A0A0L7R2V8   A0A2A3ET06   V9ILQ7   A0A0P5HZP4   A0A088AS59   A0A0P6B602   A0A2J7QB73   A0A131Z1J7   B4PJT1   A0A0R1DWB6   A0A195F313   A0A034VBD0   B3NFL0  

PDB

5E7M     E-value=2.32431e-80,     Score=762

KEGG

101736496    K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] | (RefSeq) ATP-dependent RNA helicase dbp2

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003676   GO:0005524   GO:0004386   GO:0005840   GO:0006412   GO:0016705   GO:0020037   GO:0006811   GO:0016020   GO:0005634   GO:0006260  

Length:

515

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0514600000000001

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00190

outside

1  -  515

 

 

Pi

253.843979

Theta

219.614876

Tajima's D

0.111571

CLR

0.180573

CSRT

0.398530073496325

Interpretation

Uncertain