Gene

KWMTBOMO06730

Pre Gene Modal

BGIBMGA011745

Annotation

PREDICTED:_leucine-rich_repeat-containing_protein_16A_[Bombyx_mori]

Location

Bomo_Chr11(+):13206220-13215314      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.612

CDS

ATGCTGTCCCTGCCGCCGCTGCACGCCGAGGCCACCGACGGACTCGCCGACCTGCCGGCCCACACGCTCAGGCATCTCGTCAAAGGTCGGCCGCGGCGTGCGAAGACGCGCGCGCCCAGCCGGCCCGTGGCGGACGGCGCGCAGGAGATGGACGAGGGGCTGGAGGAGTTCTGGCGCACGTGCCGCACGCCGCCCGGCAGCGAGGAGCCGTCCCTCTCCCGCACGTCGCGCTCCCTGCACTCGCTCTCGTCGCTGGCCTCGCCCTCGCCGCGCCGCGACTCGCACCGGGACGACACGCTGTACAGCGTTACGTCCGGGGAGAGTACGCCCGTTCTGCTCGAGTGCGACGTTTCCCGCTGCAAGTCTTCCGACAACGTAGGAGCAAAACCGGCAACCACTCCGCCGCCGTCTAGGTCCTCCGACAATGTCAACACGATGGGGAACGGGTGCGGTCGCGCGGGCGGCAAGGCGCGGCCCTGGTCCGTCGCCGGCAACCCCGACACCGCCGCCGTCTGCACCACCGAAGGAGTGGAGGCACGCTATTCTGTACTGAGTTCTAGTGTCGATGTGCCACTTCGTGTAGGTTCAATGTTACGTGACCATCCGTTGACGCCTGAGGGCGCAGAAACCTAA

Protein

MLSLPPLHAEATDGLADLPAHTLRHLVKGRPRRAKTRAPSRPVADGAQEMDEGLEEFWRTCRTPPGSEEPSLSRTSRSLHSLSSLASPSPRRDSHRDDTLYSVTSGESTPVLLECDVSRCKSSDNVGAKPATTPPPSRSSDNVNTMGNGCGRAGGKARPWSVAGNPDTAAVCTTEGVEARYSVLSSSVDVPLRVGSMLRDHPLTPEGAET

Uniprot

A0A212F5S6   A0A2H1W7S0   A0A3S2M7S6   A0A2A4KA86   A0A0N0PCQ2   A0A194PEJ0   + More
A0A1E1W681   A0A2M4A9T6   A0A2M4AB90   A0A2M4ABJ6   A0A2M4AB13   W5JQ42   A0A182FCS6   A0A2M4CMT9   A0A336K1P9   A0A336LZY6   A0A336LQT9   A0A336K391   A0A336K803   A0A2M4BM42   A0A2M4BMC0   A0A2M4BMD1   A0A1B0DAG8   A0A182WMJ3   A0A182NV26   A0A1L8E5S6   A0A1L8E582   A0A182YBW7   A0A182VG75   A0A182P0L2  

Pubmed

22118469    26354079    20920257    23761445    25244985   

EMBL

AGBW02010142    OWR49086.1    ODYU01006804    SOQ48996.1    RSAL01000016    RVE52984.1    + More
NWSH01000021    PCG80703.1    KQ460499    KPJ14289.1    KQ459606    KPI91687.1    GDQN01008590    JAT82464.1    GGFK01004208    MBW37529.1    GGFK01004661    MBW37982.1    GGFK01004667    MBW37988.1    GGFK01004660    MBW37981.1    ADMH02000839    ETN64879.1    GGFL01002333    MBW66511.1    UFQS01000063    UFQT01000063    SSW98884.1    SSX19270.1    SSW98882.1    SSX19268.1    SSW98885.1    SSX19271.1    SSW98881.1    SSX19267.1    SSW98883.1    SSX19269.1    GGFJ01004961    MBW54102.1    GGFJ01004962    MBW54103.1    GGFJ01004960    MBW54101.1    AJVK01029061    AJVK01029062    GFDF01000095    JAV13989.1    GFDF01000258    JAV13826.1   

Proteomes

UP000007151    UP000283053    UP000218220    UP000053240    UP000053268    UP000000673    + More
UP000069272    UP000092462    UP000075920    UP000075884    UP000076408    UP000075903    UP000075885   

Pfam

PF16000   CARMIL_C        + More
PF17888   Carm_PH
PF13516   LRR_6
PF18699   MRPL52
PF00560   LRR_1

Interpro

IPR001611   Leu-rich_rpt        + More
IPR041245   CARMIL_PH       
IPR011993   PH-like_dom_sf       
IPR032675   LRR_dom_sf       
IPR031943   CARMIL_C       
IPR034596   MRPL52       

Gene 3D

2.30.29.30     3.80.10.10    

ProteinModelPortal

A0A212F5S6   A0A2H1W7S0   A0A3S2M7S6   A0A2A4KA86   A0A0N0PCQ2   A0A194PEJ0   + More
A0A1E1W681   A0A2M4A9T6   A0A2M4AB90   A0A2M4ABJ6   A0A2M4AB13   W5JQ42   A0A182FCS6   A0A2M4CMT9   A0A336K1P9   A0A336LZY6   A0A336LQT9   A0A336K391   A0A336K803   A0A2M4BM42   A0A2M4BMC0   A0A2M4BMD1   A0A1B0DAG8   A0A182WMJ3   A0A182NV26   A0A1L8E5S6   A0A1L8E582   A0A182YBW7   A0A182VG75   A0A182P0L2  

KEGG

101745400    K20493 leucine-rich repeat-containing protein 16 | (RefSeq) leucine-rich repeat-containing protein 1

GO

GO:0051638   GO:0030027   GO:0030335   GO:1902745   GO:2000813   GO:0005762   GO:0003735   GO:0032543  

Length:

210

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00539

outside

1  -  210

 

 

Pi

338.924925

Theta

202.903842

Tajima's D

2.977737

CLR

0.263373

CSRT

0.976751162441878

Interpretation

Uncertain