Gene

KWMTBOMO06729

Pre Gene Modal

BGIBMGA011744

Annotation

PREDICTED:_leucine-rich_repeat-containing_protein_16A_[Bombyx_mori]

Location

Bomo_Chr11(+):13185910-13202834      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.218 Peroxisomal   Reliability : 1.053

CDS

ATGCCAGCAAAATCACATATATCAACAGAGCTGAATGATAGCATCAGCAATGTTTTGGGGAAGAATGTCAAAGTTATTTATAAATCCCTTATTCGTATGGAATCAAGAGGTGATAAGGTTGATAACAAGGTTTTGGTTGTGACTGCATATCGGGTTTTTATAACTACAGCGAAAGTACCTACTAGGATTGACAATGGGTTCCATTTAATGGAAATAGAAGCCTTGGAGAGTAAAAAAGCGAATCATCTGTCCATAACATTGGTTCACGAACACAAGCCTGTCTCCATTCTCATAGGTGACGAAGGAACTTCAGAAGGTGTTATAAATGCCGTGAACGCTTTAACTGCCGCCTTCGATGATCTATTTCCTAATGTGCCAATGGTGGATATAATACAAAAGGTGAATCTACTCTTCCCATTACAAAACGTCAGCGGGACTAGGAAGCACCTAGCTTGTGGTGATTTTTCTAATCAGTACGCTGCCATGTGTGATTTATGTCAAACACCATTCAGAGCTGAAGTTGCGTGGGATATTGACACCATATACCTCGCACACGACATAAGAATGTTGCATTTGAAAGATTTCGATCATCTGGACCAAAGGGACCTGATACCACTAGTGATGGCGTTGCAACACAACACGTGGTTCGAGGGTATTTGCGGGGACGGGGTGCGGGCGAGTGGCGAGGCGTGGGAGAGCGTGTGCCGCGCGCTGCGGTGTTCGCGGCCGGCCACGCGCCGTGTCAGCTGGCGCAGCGCACAGCTCCGTCACGACCACGCCGCCAGACTGGGACACGCGCTCGCCCGCGCCCGCCACGCGCCCGCACTGCACACCATCGACTTCTCACAGAACCACATCGAGGATAAAGGTGCTATTAGTATACTGAGCGGCATATCGAACAATCCAGAAGGACTGAGGCACGTTGCGTTGTCACAATGCGGCGTGACGGGGAAGACGGTCGTACATTTGGCGACCATACTCAACGACAATCCCTGTCATCTCTCGACGCTCGCACACCTTGACCTGTCGCATAATAACCTGAAAGATGACGTGCACAATTTGTACAACTTCCTGGCACAGCCTAATGTATTGACCCATTTGAATTTGACTAACACGGAAACGACTTTAGAAAATATGTGGGGTGCCCTGCTGCGCGGGTGTGCGGCGCGCCTCACCTGGCTGTCCGTGTCCCGCAACCCGTGGTCGAGCGCCCGGCGCGCGCGGGACCCGCCGCCTTCCTTCCGACAATTCTTCACGGCGTGCCTCGCGATCAACCATCTCGACTTCTCCCACTGCAAAATGCCACCAGACGTGCTCAAGAGCTTGCTGCTGGGCCTGGCGTGCAACGAGAGTGCGGCCGGGGTCCAGCTGAATTTGTCGGGCGTGCTGAACTCGGCGCAGGCCGCGCACGTGCTCGAGTCGTGTATACACGGCGTGCGATGCCTGCAGTCTCTGGACCTCTCCGACAACAGTATGGAATTCGAATTGTCCGGTATTGTGAGAGCTATAGGGAAGAACCATTCCATCACACATTTATCGTTAAGTAGATTGACCGGGAAGAGATCGTACGCTCCCCCCCTAATACAAGCTCTAGTCCACGTGCTGCAGGAACCAGACACAGCGCTGACGTCACTGGACCTCAGCGATTGCAAACTAAAGGGTGATTTGTACGGATTATTGAACGCGTTGGGCGGAGCCCGGAGACTTCGTACACTGGACGTGGGAGGGAACCTAGCCGGCGACGCGGGAGCTAGATTACTTGCCAAAGCCTTACAGTGTAACTGTACTTTGCACACGCTGTATATAGATCGCAATGCATTTAGTTTACAAGGTTTGACTGACATTGCGACGGCGCTCCGTCGGTCTGTGAGCGTGCGGCGGGTCGAGTTCCCGGGATGCGACGCGGCGGCGGGCGGCCGCGCGGCCAGCGAGCGGGTCGCCGCGCTCTGGAGGGACTTGCACGAACGGTACTCGCCACTATTGTCACTCCGAACCACACGGATAGGTCCCTAA

Protein

MPAKSHISTELNDSISNVLGKNVKVIYKSLIRMESRGDKVDNKVLVVTAYRVFITTAKVPTRIDNGFHLMEIEALESKKANHLSITLVHEHKPVSILIGDEGTSEGVINAVNALTAAFDDLFPNVPMVDIIQKVNLLFPLQNVSGTRKHLACGDFSNQYAAMCDLCQTPFRAEVAWDIDTIYLAHDIRMLHLKDFDHLDQRDLIPLVMALQHNTWFEGICGDGVRASGEAWESVCRALRCSRPATRRVSWRSAQLRHDHAARLGHALARARHAPALHTIDFSQNHIEDKGAISILSGISNNPEGLRHVALSQCGVTGKTVVHLATILNDNPCHLSTLAHLDLSHNNLKDDVHNLYNFLAQPNVLTHLNLTNTETTLENMWGALLRGCAARLTWLSVSRNPWSSARRARDPPPSFRQFFTACLAINHLDFSHCKMPPDVLKSLLLGLACNESAAGVQLNLSGVLNSAQAAHVLESCIHGVRCLQSLDLSDNSMEFELSGIVRAIGKNHSITHLSLSRLTGKRSYAPPLIQALVHVLQEPDTALTSLDLSDCKLKGDLYGLLNALGGARRLRTLDVGGNLAGDAGARLLAKALQCNCTLHTLYIDRNAFSLQGLTDIATALRRSVSVRRVEFPGCDAAAGGRAASERVAALWRDLHERYSPLLSLRTTRIGP

Uniprot

A0A2A4KA86   A0A3S2M7S6   A0A0N0PCZ5   A0A194PEJ0   A0A212F5S6   H9JQD8   + More
A0A1Y1LRL6   C6TP27   A0A067QY91   K7J5V8   A0A1I8N8B1   T1PLL0   A0A2P8XI95   A0A1Y1LRQ5   A0A1Y1LZB7   A0A1Y1LRS8   A0A1Y1LWA1   A0A0A1WZQ8   A0A0Q5WL40   A0A1W4VZ74   E1JGZ7   A0A0J9R7M1   A0A0R1DTJ3   A0A0P8YC22   A0A182RQG5   A0A0P9AF56   E2AID4   A0A0Q5WL52   A0A0A1XRS0   A0A1B6KVN4   A0A0Q5WNP1   B4J803   A0A1Q3FU64   A0A0K8VGJ4   B4LJH5   A0A1Q3FUN1   E1JGZ8   A0A0J9R8P1   A0A336K1P9   A0A336LQT9   A0A336LZY6   A0A0R1DN15   A0A0J9TVJ5   A0A336K803   A0A1I8N8B0   A0A3B0J2M8   A0A0K8VAL1   A0A0K8WA43   A0A1W4WBE9   B4GBF6   T1PLY5   A0A195F1W2   A0A1I8N8C9   A0A151JSX1   A0A0K8V7K3   A0A151XBK1   A0A034VBN4   A0A3B0JWJ1   W8ACX0   W8AJ71   A0A310SEB8   A0A087ZZK0   A0A195BH80   A0A0Q9XJN0   A0A158NL47   E2BKH2   A0A3B0JQ23   A0A195BYV6   A0A3B0J6J9   A0A3L8DAL1   Q7Q947   A0A1W4WA10   A0A0Q9W4M0   A0A026WW34   A0A3B0J2M7   A0A2A3EJE6   A0A1W4WAZ1   A0A0R3NMB2   A0A0P9BYS0   A0A0P8Y4L5   B3MHT1   A0A0J9R7M6   A0A0L7QNT5   A0A0R3NT91   W4VRD5   A0A084VUE3   A0A0Q5WC05   A0A1B6DKA9   B3N9V1   A0A0P4W380   A0A0Q9WCR9   A0A0A1WTD3   A0A0Q5WC88   A0A182WS46   A0A182HXU2   A0A1I8N8C1   A0A0K8V6G3   A0A0R1DM02  

Pubmed

26354079    22118469    19121390    28004739    24845553    20075255    + More
25315136    29403074    25830018    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    17550304    20798317    25348373    24495485    21347285    30249741    12364791    24508170    15632085    24438588   

EMBL

NWSH01000021    PCG80703.1    RSAL01000016    RVE52984.1    KQ460499    KPJ14290.1    + More
KQ459606    KPI91687.1    AGBW02010142    OWR49086.1    BABH01011901    BABH01011902    GEZM01048852    GEZM01048850    GEZM01048847    GEZM01048846    JAV76334.1    BT099513    ACU24753.2    KK852833    KDR15295.1    KA649667    AFP64296.1    PYGN01002038    PSN31727.1    GEZM01048848    JAV76339.1    GEZM01048853    JAV76327.1    GEZM01048843    JAV76353.1    GEZM01048842    JAV76355.1    GBXI01010000    JAD04292.1    CH954177    KQS70926.1    AE013599    ACZ94356.2    CM002911    KMY92066.1    CM000157    KRJ98307.1    CH902619    KPU76522.1    KPU76519.1    GL439757    EFN66809.1    KQS70923.1    GBXI01000620    JAD13672.1    GEBQ01024477    JAT15500.1    KQS70930.1    CH916367    EDW02233.1    GFDL01003884    JAV31161.1    GDHF01014341    JAI37973.1    CH940648    EDW61543.2    GFDL01003883    JAV31162.1    ACZ94354.1    KMY92069.1    UFQS01000063    UFQT01000063    SSW98884.1    SSX19270.1    SSW98885.1    SSX19271.1    SSW98882.1    SSX19268.1    KRJ98302.1    KMY92065.1    SSW98883.1    SSX19269.1    OUUW01000001    SPP75445.1    GDHF01016426    JAI35888.1    GDHF01004256    JAI48058.1    CH479181    EDW32258.1    KA649739    AFP64368.1    KQ981866    KYN34084.1    KQ978530    KYN30320.1    GDHF01017392    JAI34922.1    KQ982320    KYQ57734.1    GAKP01019023    JAC39929.1    SPP75448.1    GAMC01020775    JAB85780.1    GAMC01020773    JAB85782.1    KQ779356    OAD51968.1    KQ976488    KYM83526.1    CH933808    KRG04503.1    ADTU01019250    GL448795    EFN83812.1    SPP75446.1    KQ978501    KYM93505.1    SPP75442.1    QOIP01000011    RLU16958.1    AAAB01008905    EAA09715.3    KRF80057.1    KK107078    EZA60295.1    SPP75447.1    KZ288230    PBC31594.1    CM000071    KRT02071.1    KPU76523.1    KPU76526.1    EDV36918.2    KMY92063.1    KQ414855    KOC60151.1    KRT02064.1    GANO01003705    JAB56166.1    ATLV01016728    KE525103    KFB41587.1    KQS70928.1    GEDC01011230    JAS26068.1    EDV59647.2    GDRN01092799    JAI60041.1    KRF80055.1    GBXI01012003    JAD02289.1    KQS70924.1    APCN01005349    GDHF01017996    JAI34318.1    KRJ98308.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    UP000005204    + More
UP000027135    UP000002358    UP000095301    UP000245037    UP000008711    UP000192221    UP000000803    UP000002282    UP000007801    UP000075900    UP000000311    UP000001070    UP000008792    UP000268350    UP000008744    UP000078541    UP000078492    UP000075809    UP000005203    UP000078540    UP000009192    UP000005205    UP000008237    UP000078542    UP000279307    UP000007062    UP000053097    UP000242457    UP000001819    UP000053825    UP000030765    UP000076407    UP000075840   

PRIDE

H9JQD8    C6TP27   

Pfam

PF16000   CARMIL_C        + More
PF17888   Carm_PH
PF13516   LRR_6
PF18699   MRPL52

Interpro

IPR001611   Leu-rich_rpt        + More
IPR032675   LRR_dom_sf       
IPR031943   CARMIL_C       
IPR011993   PH-like_dom_sf       
IPR041245   CARMIL_PH       
IPR034596   MRPL52       

Gene 3D

2.30.29.30     3.80.10.10    

ProteinModelPortal

A0A2A4KA86   A0A3S2M7S6   A0A0N0PCZ5   A0A194PEJ0   A0A212F5S6   H9JQD8   + More
A0A1Y1LRL6   C6TP27   A0A067QY91   K7J5V8   A0A1I8N8B1   T1PLL0   A0A2P8XI95   A0A1Y1LRQ5   A0A1Y1LZB7   A0A1Y1LRS8   A0A1Y1LWA1   A0A0A1WZQ8   A0A0Q5WL40   A0A1W4VZ74   E1JGZ7   A0A0J9R7M1   A0A0R1DTJ3   A0A0P8YC22   A0A182RQG5   A0A0P9AF56   E2AID4   A0A0Q5WL52   A0A0A1XRS0   A0A1B6KVN4   A0A0Q5WNP1   B4J803   A0A1Q3FU64   A0A0K8VGJ4   B4LJH5   A0A1Q3FUN1   E1JGZ8   A0A0J9R8P1   A0A336K1P9   A0A336LQT9   A0A336LZY6   A0A0R1DN15   A0A0J9TVJ5   A0A336K803   A0A1I8N8B0   A0A3B0J2M8   A0A0K8VAL1   A0A0K8WA43   A0A1W4WBE9   B4GBF6   T1PLY5   A0A195F1W2   A0A1I8N8C9   A0A151JSX1   A0A0K8V7K3   A0A151XBK1   A0A034VBN4   A0A3B0JWJ1   W8ACX0   W8AJ71   A0A310SEB8   A0A087ZZK0   A0A195BH80   A0A0Q9XJN0   A0A158NL47   E2BKH2   A0A3B0JQ23   A0A195BYV6   A0A3B0J6J9   A0A3L8DAL1   Q7Q947   A0A1W4WA10   A0A0Q9W4M0   A0A026WW34   A0A3B0J2M7   A0A2A3EJE6   A0A1W4WAZ1   A0A0R3NMB2   A0A0P9BYS0   A0A0P8Y4L5   B3MHT1   A0A0J9R7M6   A0A0L7QNT5   A0A0R3NT91   W4VRD5   A0A084VUE3   A0A0Q5WC05   A0A1B6DKA9   B3N9V1   A0A0P4W380   A0A0Q9WCR9   A0A0A1WTD3   A0A0Q5WC88   A0A182WS46   A0A182HXU2   A0A1I8N8C1   A0A0K8V6G3   A0A0R1DM02  

PDB

4K17     E-value=2.21793e-95,     Score=893

KEGG

101745400    K20493 leucine-rich repeat-containing protein 16 | (RefSeq) leucine-rich repeat-containing protein 1

GO

GO:1902745   GO:2000813   GO:0051638   GO:0030027   GO:0030335   GO:0016021   GO:0050777   GO:0005927   GO:0017085   GO:1901223   GO:0060271   GO:0006955   GO:0005762   GO:0003735   GO:0032543   GO:0005515   GO:0005488   GO:0005840   GO:0006412   GO:0016705   GO:0020037   GO:0006811   GO:0016020   GO:0005634   GO:0006260  

Length:

670

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01163

Exp number, first 60 AAs:

0.0098

Total prob of N-in:

0.00090

outside

1  -  670

 

 

Pi

278.444956

Theta

182.252149

Tajima's D

1.576949

CLR

0.072757

CSRT

0.805459727013649

Interpretation

Uncertain