SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06728
Annotation
suppressor_of_cytokine_signaling_6_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.343 Nuclear   Reliability : 1.842 PlasmaMembrane   Reliability : 1.259
 

Sequence

CDS
ATGAACATAAGTTATGAACGATGTTCGTATTGTAACCGACGTAAATGGCTCACTAGTGGATGTCTACGTAAATGGATTAAACCAAATTCTATGGAATGTAAACATTTACAACGCAGTATTGATAAGAATAAGGATACGAATATTGATATAGTGGATGCTATTCTTATGCCAGAACCCAATTCATCTCTAAATACCAATAAATTTGTAAAACTTTGGAAGAGTAAATTTTTTATAACGACCAGCGTCAGATCCTTACAAAGATATTTCGGTAAATCACGAGGGGCTGATTCAATTTGCAAACTTAATAAGAGCAATGACCCCACATCAGCATTTGAAACAAGATATGGAATAGGAATTGAGATAAAACACACCCTTAGACCAATAATGAAGTGTCAGCATTCAAAAGAAGGACATTCTGTTCTACGCAGTCACCATCAACATGCATCCCTTGAATCATGTGCTATTTATTGTCAGTTATATAATCATGGCTGGTATTGGGGTGGAATTACGTCCAGTGAAGCAGAAGAGTTGCTTGCTGGCCAACATGACAACGTTTTTTTAGTCCGAGACTCGTATGACTCCAGACACATTCTCTGCGTTTCTTTTCGTTGTGTTGGCCGTACACTGCATGCACGTCTTTTACATGCAAATGGCCTTTTTTCTCTAGATAATGAAACATTTGTGCCAGCATATAGATTATCTGAACATTGTTCTGCTGTTAATGTAAAGACAAATTTATTTGAAATGCCAGTGAAACTAGCTAGGCCTCTAAACAGGTTTGCAAAACTAGATTCCCTACAGAAAATCTGCAGGTTTGTCATCAGACAAACAGGATCATCAAATACTTGGGCTAAATTGCCTTTGCCTCCAAATCTAATATCATACATATCTATGGGAAGCGATTACATAATACCATAA
Protein
MNISYERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRSIDKNKDTNIDIVDAILMPEPNSSLNTNKFVKLWKSKFFITTSVRSLQRYFGKSRGADSICKLNKSNDPTSAFETRYGIGIEIKHTLRPIMKCQHSKEGHSVLRSHHQHASLESCAIYCQLYNHGWYWGGITSSEAEELLAGQHDNVFLVRDSYDSRHILCVSFRCVGRTLHARLLHANGLFSLDNETFVPAYRLSEHCSAVNVKTNLFEMPVKLARPLNRFAKLDSLQKICRFVIRQTGSSNTWAKLPLPPNLISYISMGSDYIIP

Summary

Pfam
PF00017   SH2        + More
PF07525   SOCS_box
Interpro
IPR036036   SOCS_box-like_dom_sf        + More
IPR036860   SH2_dom_sf       
IPR001496   SOCS_box       
IPR000980   SH2       
SUPFAM
SSF55550   SSF55550        + More
SSF158235   SSF158235       
Gene 3D
PDB
2VIF     E-value=4.49456e-15,     Score=197

Ontologies

Topology

Length:
305
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00875
Exp number, first 60 AAs:
0
Total prob of N-in:
0.07654
outside
1  -  305
 
 

Population Genetic Test Statistics

Pi
307.132393
Theta
226.265943
Tajima's D
0.910094
CLR
0
CSRT
0.640217989100545
Interpretation
Uncertain
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