Gene

KWMTBOMO06726

Pre Gene Modal

BGIBMGA011748

Annotation

PREDICTED:_coiled-coil_domain-containing_protein_93_[Bombyx_mori]

Location

Bomo_Chr11(-):13165071-13172859      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.648 Nuclear   Reliability : 2.065

CDS

ATGTCGACCAAATCAAAAAATATCTTTAGTAGGAGTAAACCGTTGATGAATATTTACAGTGGTTATGACGATGAAGGCAAAGCGGTGGAAGTTAGAGAAGATGCAGAGCAATTAGTGAAGTGGCATGAGATATCTGATGCTCTGGTTGCAGCTGGATATTATCGTGCTCAGCTTCAGGGCCTTTCAGAATTTGATAAAATAGTTGGAGGGCTCACATGGTGTATCGAACTATGTGATATTGATGTTGATATAAGTTTATTATTTGAAGAAAACCTTACAATTGGAAAGAAAATAGCCTTAACAGAGAAAATTGTAAAAATATTACCATCAATGCAATGTCCATACACAATAGAACCTCATCAAATACAAGGTCTAGATTTCATAAATATATTCCCTCTTGTCCAATGGCTAATTAAATACTCCAGTGAATTCAGGGAGGCTAAGGAGGATGAACTCAGAAGATTTGCTGTGTTACAATATGAAAAAAATTACATATTTGAATCGGACAGAGCTATGTTCTTAAAAAAAGAAAATTTGTTGAAAACTATTGTTGCAGTGCAGAACATGTACAAACCATGTCGTGTGCGTAAAAGGAAAGGTGGTTTACCGGGGAGTGAGCTGGAACAAGTCAATGCGACACTCTCTGAATATGATCAGAGAATGCTGATGCATGTAACAACAAATAAGGATGATTCTAACAATGATGAGGGTCTTGATTTCTTGTATGATTATGAAAAAACACTTGCTGATCCTTCTCAGATTACTACTGAAACAGATGTATTCAAAAAGGATGAACATACTATAATTGATGATCCAAACATGAAAGTCCATTATGCGGTATTGCATTCTGAACTTACCGGGGAAATGTCAAAGGAATTAGAGGAAAGTGAAAAGTTTAAATATAGTGAAGATATCGAGAAACTTACTAAAGCTATAGATGTTATGCAGAGAGAAGTGGATGTTCTTAAACAACAACACGAAGCAAGAATGGAAAATGCTAAAAAACAGTACAGCAACAAAATTGGAAAATTGCAGAAGATTACATTAAAATTGATGAACACTAATAATTATAGTGATAAAGATGTGAAAGAGTTCTACAAATCACTAAAAGACCTGGGAAAAGAACAGAATGAGCTTGTGAAAGTAGTTCAGCACAGAGACAGGGTTTACAAGAAATTAGAAGAAGAACTAAGAACTGCAAAGAGTCCAGAAACCGCAGTGGAGGAGACGCCGCTAACGCCTGAAGAATTAAAAGAAGTACGCGAGAGAGAAGAGAAGCTGAAGTCGTTTATCACGACCACGAGGCTGGAGGTCGCCAAGTTGAACCGCGAGGTGGTCCGGTACACGCGCGCCCTCGACGACGTGCCCGGCGCCGCCGAGCTGCTGCAGTACGAGAAGAGATTTGTCGAGCTCTATAACCAAGTTGCCTCGAAGCACAAGGAAACAAAACAGTACTACATATTCTACAACACCCTGTACGAAGTTAAACTGTACACCACGAAGGAGTTGAGTTTGCACAATTCGATTCTGGACAATTACGAAGAAGCAATGTCGTCGGCAAGGAAGCGGGAAGAGTTCATGTCTCAATTCGAAAATATAGTCGAGTGGGTCAATCAAACTGTGAAAAAAGTCGAGGATAAATATAGAGCCGAGAAGGAACGCAAGGCGGATCTGTACAACGAGTACTCGAGGTTAATGAATGTGCAGAGGCAGTACGGCGCCGCCCTCAAGAAGTTGGCTGAAGAAAGACAGAAGATAACCAGACGCACGCAACCGAGGGAAGAAGTATAG

Protein

MSTKSKNIFSRSKPLMNIYSGYDDEGKAVEVREDAEQLVKWHEISDALVAAGYYRAQLQGLSEFDKIVGGLTWCIELCDIDVDISLLFEENLTIGKKIALTEKIVKILPSMQCPYTIEPHQIQGLDFINIFPLVQWLIKYSSEFREAKEDELRRFAVLQYEKNYIFESDRAMFLKKENLLKTIVAVQNMYKPCRVRKRKGGLPGSELEQVNATLSEYDQRMLMHVTTNKDDSNNDEGLDFLYDYEKTLADPSQITTETDVFKKDEHTIIDDPNMKVHYAVLHSELTGEMSKELEESEKFKYSEDIEKLTKAIDVMQREVDVLKQQHEARMENAKKQYSNKIGKLQKITLKLMNTNNYSDKDVKEFYKSLKDLGKEQNELVKVVQHRDRVYKKLEEELRTAKSPETAVEETPLTPEELKEVREREEKLKSFITTTRLEVAKLNREVVRYTRALDDVPGAAELLQYEKRFVELYNQVASKHKETKQYYIFYNTLYEVKLYTTKELSLHNSILDNYEEAMSSARKREEFMSQFENIVEWVNQTVKKVEDKYRAEKERKADLYNEYSRLMNVQRQYGAALKKLAEERQKITRRTQPREEV

Uniprot

H9JQE2   A0A2A4KAB2   A0A3S2THH6   A0A2H1W7H8   A0A194PG55   A0A212F5T1   + More
A0A0N1PGH2   A0A1E1VXP7   A0A0K8TQD0   A0A0L0BP07   A0A0L7RJU6   A0A3B0IYH1   A0A3B0IY46   D6WHJ6   A0A1Y1MZ71   A0A1Y1N2P3   B4MQE4   A0A0S7KP10   I3KLI1   A0A3B3DPD7   A0A3B4H3N8   A0A3P9C8F6   G3N9D1   A0A3B4T2B9   A0A1Z5L532   A0A3Q3G7E2   A0A336L1U4   A0A293MX27   A0A2R5LJF6   A0A3Q2X2U8   A0A0S7KQ40   A0A0N4UY64  

Pubmed

19121390    26354079    22118469    26369729    26108605    18362917    + More
19820115    28004739    17994087    25186727    29451363    28528879   

EMBL

BABH01011903    NWSH01000021    PCG80670.1    RSAL01000137    RVE46182.1    ODYU01006762    + More
SOQ48906.1    KQ459606    KPI91684.1    AGBW02010142    OWR49083.1    KQ460499    KPJ14293.1    GDQN01011546    JAT79508.1    GDAI01001029    JAI16574.1    JRES01001693    KNC20949.1    KQ414579    KOC71140.1    OUUW01000001    SPP72875.1    SPP72874.1    KQ971331    EEZ99728.2    GEZM01017064    JAV90934.1    GEZM01017063    JAV90935.1    CH963849    EDW74333.1    GBYX01202451    JAO79038.1    AERX01040315    AERX01040316    GFJQ02004590    JAW02380.1    UFQS01001324    UFQT01001324    SSX10353.1    SSX30041.1    GFWV01019740    MAA44468.1    GGLE01005554    MBY09680.1    GBYX01202461    JAO79033.1    UXUI01007339    VDD87071.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000053240    + More
UP000037069    UP000053825    UP000268350    UP000007266    UP000007798    UP000005207    UP000261560    UP000261460    UP000265160    UP000007635    UP000261420    UP000261660    UP000264840    UP000038041    UP000274131   

PRIDE

H9JQE2   

Pfam

PF09762   KOG2701        + More
PF00075   RNase_H
PF00078   RVT_1

Interpro

IPR039116   CCDC93        + More
IPR019159   CCDC93_CC       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF53098   SSF53098       

Gene 3D

3.30.420.10    

ProteinModelPortal

H9JQE2   A0A2A4KAB2   A0A3S2THH6   A0A2H1W7H8   A0A194PG55   A0A212F5T1   + More
A0A0N1PGH2   A0A1E1VXP7   A0A0K8TQD0   A0A0L0BP07   A0A0L7RJU6   A0A3B0IYH1   A0A3B0IY46   D6WHJ6   A0A1Y1MZ71   A0A1Y1N2P3   B4MQE4   A0A0S7KP10   I3KLI1   A0A3B3DPD7   A0A3B4H3N8   A0A3P9C8F6   G3N9D1   A0A3B4T2B9   A0A1Z5L532   A0A3Q3G7E2   A0A336L1U4   A0A293MX27   A0A2R5LJF6   A0A3Q2X2U8   A0A0S7KQ40   A0A0N4UY64  

KEGG

101745541    no KO assigned | (RefSeq) coiled-coil domain-containing protein 93

GO

GO:0006893  

PANTHER

PTHR16441  

Length:

596

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00131

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.00146

outside

1  -  596

 

 

Pi

262.115908

Theta

21.216675

Tajima's D

-0.713525

CLR

0.012638

CSRT

0.19734013299335

Interpretation

Uncertain