Gene

KWMTBOMO06720

Annotation

PREDICTED:_intraflagellar_transport_protein_osm-1?_partial_[Papilio_polytes]

Location

Bomo_Chr11(-):13112916-13118959      View in EpiBrowser

Full name

Intraflagellar transport protein 172 homolog      

Alternative Name

Osmotic avoidance abnormal protein 1 homolog
Outer segment 2

Location in the cell

PlasmaMembrane   Reliability : 3.798

CDS

ATGAAGTTGGTGCTAATCGTGGGGTCGTGTGACGGTCGTTTGTCTGTGTATGAGGCGCAGCGCGGTGCCTTGTTGCGTAGTGTCGAGCCAGACTTGCCTCCGGACGTGAAAGATATCATAGCTGCGGCACCGAGTCCATCAGGACAGACTATTGCGTTTGGTGTCTTTAATGGATGTCTAGTGGGAGAGTTGAAGGAATCCGGGTCAGTCGATTTATCAATGCTTCAAATACCGAACCTGTACGCCACTAGAGCGCTCGCTTGGAGTAGTGACGGCACTAAATTGGCGATAGCTTCACAAACTGGAGCTCTTATAGTGCTCGAGGCTGTTTTAAGACGTTGGGTGTGGCGTGACACAGTGGAGGTGCAGCACGTGAGCTCGAGACAGTTGTTATTAACAAGACTAGCTAACGATGCTCTTCCGCTCACAGTTCTCACAAACCACGCTTCGGATATATTCGGCGTCCGTTTCATTGGGAATGACTGGTATGCGGTGTGCAGGACTAGCAACACGTTGATCTTATGCGATATAGCTCGTGGACTCACCAGTGAGATACTATGGACGGGTAGCGGAGAACGTATTTATGCAGCTGTCGGTGGAGCATGTCTGATATATCGCGCCGGTGAACTGAGTGTTGTCGAATACGGACTTGATAAAGTTCTACATACGGTTCGTACAGAACGTGTGAACCCTCACGTGATCAGCGTGCGGATCAATGAAGCTGGTTTGACGAAAGGGGACTGCAAATACTTGGCATATTTGCTAGATAGACAAACTATTGCTGTTGTAGATTTGAGCACAGGTGCTCAGTTGGGGCAGTGGTGGCACGAGGCCCGCGTGGATTGGCTCGAGCTGAACGAGACCGCGCAGCTGTTGCTGCTCCGTGACACGAGGAGAAGACTTGCGCTACTGCGGTTACCGTCTGGTGATAAGGAAATTATTGCGAGTGGCGTCTGGCCTAAAGATAATGACACTCTTATTGCTCTACAACGTACATATTTTACATTTATATCTATCATTATTTTTGTTATCATGAAACGTTAG

Protein

MKLVLIVGSCDGRLSVYEAQRGALLRSVEPDLPPDVKDIIAAAPSPSGQTIAFGVFNGCLVGELKESGSVDLSMLQIPNLYATRALAWSSDGTKLAIASQTGALIVLEAVLRRWVWRDTVEVQHVSSRQLLLTRLANDALPLTVLTNHASDIFGVRFIGNDWYAVCRTSNTLILCDIARGLTSEILWTGSGERIYAAVGGACLIYRAGELSVVEYGLDKVLHTVRTERVNPHVISVRINEAGLTKGDCKYLAYLLDRQTIAVVDLSTGAQLGQWWHEARVDWLELNETAQLLLLRDTRRRLALLRLPSGDKEIIASGVWPKDNDTLIALQRTYFTFISIIIFVIMKR

Description

Required for the maintenance and formation of cilia.

Similarity

Belongs to the IFT172 family.

Keywords

Cell projection   Cilium   Complete proteome   Developmental protein   Reference proteome   Repeat   TPR repeat   WD repeat  

Feature

chain  Intraflagellar transport protein 172 homolog

Uniprot

A0A2H1W743   A0A3S2NAW4   A0A2A4K9V4   A0A0N1PI26   A0A194PG50   A0A212EVD8   + More
B4QN35   A0A0T6AZB0   B4N307   B4PEC2   A0A182T8W3   B3NBF4   A0A1B0CTA0   A0A0L0CF00   B4HW57   A0A1W4W4F3   A0A0R3P5G5   Q2LYU0   A0A1I8PPJ7   A0A0J9RMB7   A0A0J9RMU1   Q9W040   A0A1J1I5Q0   A0A182ILK1   A0A1I8NB59   A0A3B0KUL4   B0W088   A0A084VAU0   B3M755   A0A182YPZ2   A0A336LY03   A0A182PGF5   A0A1A9XHG5   A0A182UJV6   A0A182VL23   A0A182FHA6   A0A182HMH4   A0A1A9W7J7   A0A182RX30   A0A182WAJ7   Q5TRR4   A0A182JUZ2   A0A182MI61   A0A182N7Y3   A0A182QPT3   B4KV02   A0A1A9VEC2   A0A1A9Z4J4   A0A1B0F9U2   A0A1S4F9Q5   Q17B06   Q17AW7   A0A0C9QDS5   A0A1B0AKI5   A0A0M4EC07   A0A1B0BFI1   A0A182XD40   B4LBX2   E0VLV6   D7EJZ7   A0A0K2TUP4   B4J0J1   A0A1B6ET01   A0A2J7R9T7   A0A224XHN2   W5JIP2   T1HGF8   A0A0J7K4F0   A0A1B6CK41   A0A1B6D0F4   A0A1B6EBJ3   A0A067RFG0   E2AAT0   A0A1A8L5D0   A0A232FA46   K7IXX9   N6TQB8   U4UJF4   A0A3L8DJV9   A0A1A8QEB1   A0A026WHM9   Q5FWQ3   A0A2K6G5Y4   H3CIP1   W5KZE2   A0A1L8GCV5   F6SG36   A0A3B4BQL3   A0A3B4BQU6   A0A3B4BLU9   B3DK94   A0A3B4BQG8   A0A2S2QPL8   A0A2K5WX28   V9K8U8   Q5RHH4   A0A0P7V0V5   A0A1W4YW35   A0A1W4YLQ0   A0A3B3T3K1  

Pubmed

26354079    22118469    17994087    17550304    26108605    15632085    + More
22936249    10731132    12537572    25315136    24438588    25244985    12364791    14747013    17210077    17510324    20566863    18362917    19820115    20920257    23761445    24845553    20798317    28648823    20075255    23537049    30249741    24508170    15496914    25329095    27762356    20431018    24402279    15269167    23594743    24140113    29240929   

EMBL

ODYU01006762    SOQ48901.1    RSAL01000137    RVE46188.1    NWSH01000021    PCG80678.1    + More
KQ460499    KPJ14298.1    KQ459606    KPI91679.1    AGBW02012204    OWR45456.1    CM000363    EDX08917.1    LJIG01022553    KRT79959.1    CH964062    EDW78746.1    CM000159    EDW92960.1    CH954178    EDV50276.1    AJWK01027318    AJWK01027319    AJWK01027320    AJWK01027321    JRES01000493    KNC30792.1    CH480817    EDW50172.1    CH379069    KRT08360.1    EAL29770.2    CM002912    KMY97056.1    KMY97058.1    KMY97057.1    AE014296    CVRI01000042    CRK95655.1    OUUW01000012    SPP87638.1    DS231817    EDS39627.1    ATLV01004460    KE524214    KFB35084.1    CH902618    EDV38716.1    UFQS01000198    UFQT01000198    SSX01209.1    SSX21589.1    APCN01004435    AAAB01008960    EAL39797.1    AXCM01002609    AXCN02000907    CH933809    EDW18313.1    CCAG010018360    CH477327    EAT43464.1    CH477329    EAT43404.1    GBYB01001479    JAG71246.1    JXJN01025783    CP012525    ALC42884.1    JXJN01013485    CH940647    EDW69772.1    DS235281    EEB14362.1    DS497723    EFA12908.1    HACA01012179    CDW29540.1    CH916366    EDV96827.1    GECZ01028721    JAS41048.1    NEVH01006580    PNF37590.1    GFTR01008877    JAW07549.1    ADMH02001057    ETN64252.1    ACPB03006864    LBMM01014452    KMQ85174.1    GEDC01023434    JAS13864.1    GEDC01018223    JAS19075.1    GEDC01002054    JAS35244.1    KK852721    KDR17746.1    GL438172    EFN69459.1    HAEF01002628    SBR40010.1    NNAY01000552    OXU27721.1    APGK01055682    APGK01055683    KB741269    ENN71435.1    KB632330    ERL92593.1    QOIP01000007    RLU20158.1    HAEH01011209    SBR91663.1    KK107238    EZA54589.1    BC089250    AAH89250.1    CM004474    OCT81621.1    AAMC01141121    AAMC01141122    AAMC01141123    AAMC01141124    AAMC01141125    BC163767    AAI63767.1    GGMS01010267    MBY79470.1    AQIA01018728    AQIA01018729    AQIA01018730    AQIA01018731    JW861520    AFO94037.1    AY618923    BX511178    JARO02001718    KPP74606.1   

Proteomes

UP000283053    UP000218220    UP000053240    UP000053268    UP000007151    UP000000304    + More
UP000007798    UP000002282    UP000075901    UP000008711    UP000092461    UP000037069    UP000001292    UP000192221    UP000001819    UP000095300    UP000000803    UP000183832    UP000075880    UP000095301    UP000268350    UP000002320    UP000030765    UP000007801    UP000076408    UP000075885    UP000092443    UP000075902    UP000075903    UP000069272    UP000075840    UP000091820    UP000075900    UP000075920    UP000007062    UP000075881    UP000075883    UP000075884    UP000075886    UP000009192    UP000078200    UP000092445    UP000092444    UP000008820    UP000092460    UP000092553    UP000076407    UP000008792    UP000009046    UP000007266    UP000001070    UP000235965    UP000000673    UP000015103    UP000036403    UP000027135    UP000000311    UP000215335    UP000002358    UP000019118    UP000030742    UP000279307    UP000053097    UP000233160    UP000007303    UP000018467    UP000186698    UP000008143    UP000261440    UP000233100    UP000000437    UP000034805    UP000192224    UP000261540   

PRIDE

Q9W040    Q5RHH4   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40
PF05018   DUF667
PF00067   p450
PF13181   TPR_8

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR001680   WD40_repeat       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR017986   WD40_repeat_dom       
IPR007714   CFA20_dom       
IPR036396   Cyt_P450_sf       
IPR024977   Apc4_WD40_dom       
IPR017972   Cyt_P450_CS       
IPR001128   Cyt_P450       
IPR002401   Cyt_P450_E_grp-I       
IPR019734   TPR_repeat       
IPR016024   ARM-type_fold       
IPR011044   Quino_amine_DH_bsu       
IPR011048   Haem_d1_sf       

SUPFAM

SSF48452   SSF48452        + More
SSF50978   SSF50978       
SSF50998   SSF50998       
SSF48264   SSF48264       
SSF48371   SSF48371       
SSF50969   SSF50969       
SSF51004   SSF51004       

Gene 3D

2.130.10.10     1.25.40.10     1.10.630.10    

ProteinModelPortal

A0A2H1W743   A0A3S2NAW4   A0A2A4K9V4   A0A0N1PI26   A0A194PG50   A0A212EVD8   + More
B4QN35   A0A0T6AZB0   B4N307   B4PEC2   A0A182T8W3   B3NBF4   A0A1B0CTA0   A0A0L0CF00   B4HW57   A0A1W4W4F3   A0A0R3P5G5   Q2LYU0   A0A1I8PPJ7   A0A0J9RMB7   A0A0J9RMU1   Q9W040   A0A1J1I5Q0   A0A182ILK1   A0A1I8NB59   A0A3B0KUL4   B0W088   A0A084VAU0   B3M755   A0A182YPZ2   A0A336LY03   A0A182PGF5   A0A1A9XHG5   A0A182UJV6   A0A182VL23   A0A182FHA6   A0A182HMH4   A0A1A9W7J7   A0A182RX30   A0A182WAJ7   Q5TRR4   A0A182JUZ2   A0A182MI61   A0A182N7Y3   A0A182QPT3   B4KV02   A0A1A9VEC2   A0A1A9Z4J4   A0A1B0F9U2   A0A1S4F9Q5   Q17B06   Q17AW7   A0A0C9QDS5   A0A1B0AKI5   A0A0M4EC07   A0A1B0BFI1   A0A182XD40   B4LBX2   E0VLV6   D7EJZ7   A0A0K2TUP4   B4J0J1   A0A1B6ET01   A0A2J7R9T7   A0A224XHN2   W5JIP2   T1HGF8   A0A0J7K4F0   A0A1B6CK41   A0A1B6D0F4   A0A1B6EBJ3   A0A067RFG0   E2AAT0   A0A1A8L5D0   A0A232FA46   K7IXX9   N6TQB8   U4UJF4   A0A3L8DJV9   A0A1A8QEB1   A0A026WHM9   Q5FWQ3   A0A2K6G5Y4   H3CIP1   W5KZE2   A0A1L8GCV5   F6SG36   A0A3B4BQL3   A0A3B4BQU6   A0A3B4BLU9   B3DK94   A0A3B4BQG8   A0A2S2QPL8   A0A2K5WX28   V9K8U8   Q5RHH4   A0A0P7V0V5   A0A1W4YW35   A0A1W4YLQ0   A0A3B3T3K1  

KEGG

NA   

GO

GO:0031514   GO:0042073   GO:0097730   GO:1905515   GO:0005929   GO:0007018   GO:0060271   GO:0030990   GO:0005871   GO:0007275   GO:0020037   GO:0005506   GO:0016705   GO:0005930   GO:0036064   GO:0030992   GO:0045494   GO:0032006   GO:0060041   GO:0048793   GO:0005515   GO:0008270   GO:0043565   GO:0008242   GO:0006811   GO:0016020   GO:0005634   GO:0006260  

Subcellular location

  

Length:

347

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

14.2705

Exp number, first 60 AAs:

0.00488

Total prob of N-in:

0.01215

outside

1  -  326

TMhelix

327  -  344

inside

345  -  347

 

 

Pi

250.089579

Theta

216.383768

Tajima's D

0.526412

CLR

0.191857

CSRT

0.51732413379331

Interpretation

Uncertain