Gene

KWMTBOMO06719  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011750

Annotation

PREDICTED:_intraflagellar_transport_protein_osm-1_[Bombyx_mori]

Location

Bomo_Chr11(-):13100054-13110709      View in EpiBrowser

Full name

Intraflagellar transport protein 172 homolog      

Alternative Name

Osmotic avoidance abnormal protein 1 homolog
Outer segment 2

Location in the cell

Cytoplasmic   Reliability : 1.64

CDS

ATGGGTTGTGCCAAGTATTTAGACGGCGTAACGAACAGCGCTGACGTCGCACCGCTCTGGAGGCAGCTGGCCGAACGAGCTCTGCAAAATGATGATATACAGTTAGCTGCAAAGTGTTATCGAGAAATAGGCGATGAATCCAGAACATTTTATTTGGAGAAGATTATAGAAGCTGCTGCGGCTGAAGGCGATGGAGACGTCGCTGCAGGTCTGAGCAGCGCAGAAGTTAGGGCACGATTAGCAATATTCAATGGGGACCTAGCGACGGCCGAAGCCTGGTATGCGAGACGATCCGGTCACCCTGAACGCGCCATCGCCATGTATAAGCAGTTCAACAGGTGGACTGACGCTATTGCTCTGGCCGAGAAGGCGGATCGCACTTCAGTTGCAAATTTAAAGCAACAGTACATGGATTATTTAACCTCAACTGGTCGTTTGGGAGAGGCCGGGGCTACCCTGGCAGCTGCAGGAGATGTACAGGGCGCAGTGAGACTGTGGTTGCGAGGAGGAAGGGCTCGTAGAGCTGCCTCACTCCTGTTACAGCATCCACAGCTACTGAGGGATAATGAGTTACTAGACTCTGTGCACACACAACTCATACAGGAGGAATGGTGGGAAATGGCCGGTGAATTATCTGAGAGACGAGGCGATGTCCGTTTGGCTGTAGATTATTACGCTAAAGGAAATAATTTTGCCAGAGCCGTTCAACTTGCCAGAGAGTCTTGTCCGGGTGAAGTGACGCATTTGGAAGGGCAGTGGGGCGCGTGGCTGGTGTCGTCCCGCCAGGCCGGCGCCGCCGTGCCGCACCTCATCGAGGCGGGGGACACTCGCGCTGCGCTCGCGGCGGCTATCAAGGCGCACCATTACAGAAAAGCTCTTCAGATTGTGCAGGCCATAGATGATAAGGAATCTATAAAAGAACAATGCGAGCAGCTCGGTGATCATTTAATATCTACGCAGGAATGGGAGACAGCAGAGAAGTTTCTCACTTCATGCGGTATGGCGGAGCGTTGCGTTCGAGCATACAACGGGGTCGGTCGCTTCGCGGACGGCCTCAGGCTTGCGGCTTCACAACTGACGGAGGAACAAACGCGAGACATTTATATACCGCTGGCCGAGGAGCTGAGGAAAGACGGACAACTTAGAAAAGCCGAGCAAATTTATATAGGTCTAGGAGAGGCTGATGAAGCTATTTCAATGTACAAGGAGGCGTCTCAATACGAGTCAATGTTGCGTCTGGTCGCGATACACCGATCCACTTTGTTAGAGGCGACGCGTCGACACGTTGCCCAAGCGTTACACGCCTCGGGAGATTTACGTGCGGCTGAAAACTATTATATACAAGCCGGTGACTGGAAAAGTGCCATACAGATGTATCGTTCGGCCGCACAGTGGGAGGGTGCTGAGCGTGTTGCTAGAGCACACGCTCCTGTTAATGTACAACAGCAGGTGGCGCTACAATGGGCCGCTGTTTTGGGTGGATTGGCTGGTGCACGACTTCTGGCTGCAAGAGGATTGGCTGCTTTAGGAGCACGATGGGCCCTACAGGCACAAAGATGGGATATAGCAATAGAATTGAGCGAACTCGGTGGTGCTATCACTCGGCGTGAAGTGGCTCGACACGAAGCGGCTGCGTTGGCGGAGGAACATCCTGAGGAGGCTGAAGCAGCCTTCCTTCGCGCGTCGGCTCCCGACCACGCCGTGCGCATGTGGCTCTCTAAAGAACAACACCAGAGGGCGCTGATCTTAGCCGAGCAGCATGCGCCGCATATGGTCGAAGAAGTACTAGTTGAAGGCGCTAGAGCAGCCGCAGAGAGAGGCGATTTACAGCAGTTCGAAGTACTCATGATCCGAGCTAATAGGCCGAGAGAGGTCGTCCAGCACTACAAGGATCTAGAGTTATGGGAAGAGGCTGCCCGTGTGTCTCGTGAGTATTTGCCGTCTAGCGGCGACGAGGAAGACGTGCCACCGGCCGTGCCAGCCCTGCTGACGCAAGCCGCGGCTCACGCCGACGCCGGCGAGTGGTGGGAAGCCGTGCAGGTATCGTATACTCAGAGTGTCTACAGGTTAAATTCAGTGGTGGCTGAGGCAATGCGGTGCCTGATTTTCGCAATTTCATAA

Protein

MGCAKYLDGVTNSADVAPLWRQLAERALQNDDIQLAAKCYREIGDESRTFYLEKIIEAAAAEGDGDVAAGLSSAEVRARLAIFNGDLATAEAWYARRSGHPERAIAMYKQFNRWTDAIALAEKADRTSVANLKQQYMDYLTSTGRLGEAGATLAAAGDVQGAVRLWLRGGRARRAASLLLQHPQLLRDNELLDSVHTQLIQEEWWEMAGELSERRGDVRLAVDYYAKGNNFARAVQLARESCPGEVTHLEGQWGAWLVSSRQAGAAVPHLIEAGDTRAALAAAIKAHHYRKALQIVQAIDDKESIKEQCEQLGDHLISTQEWETAEKFLTSCGMAERCVRAYNGVGRFADGLRLAASQLTEEQTRDIYIPLAEELRKDGQLRKAEQIYIGLGEADEAISMYKEASQYESMLRLVAIHRSTLLEATRRHVAQALHASGDLRAAENYYIQAGDWKSAIQMYRSAAQWEGAERVARAHAPVNVQQQVALQWAAVLGGLAGARLLAARGLAALGARWALQAQRWDIAIELSELGGAITRREVARHEAAALAEEHPEEAEAAFLRASAPDHAVRMWLSKEQHQRALILAEQHAPHMVEEVLVEGARAAAERGDLQQFEVLMIRANRPREVVQHYKDLELWEEAARVSREYLPSSGDEEDVPPAVPALLTQAAAHADAGEWWEAVQVSYTQSVYRLNSVVAEAMRCLIFAIS

Description

Required for the maintenance and formation of cilia.

Similarity

Belongs to the IFT172 family.

Keywords

Cell projection   Cilium   Complete proteome   Developmental protein   Reference proteome   Repeat   TPR repeat   WD repeat  

Feature

chain  Intraflagellar transport protein 172 homolog

Uniprot

H9JQE4   A0A3S2NAW4   A0A2A4K9V4   A0A2H1W743   A0A194PG50   A0A1S4F9Q5   + More
Q17B06   A0A1W4W4F3   Q17AW7   Q9W040   B4HW57   A0A0J9RMB7   A0A0J9RMU1   B0W088   B3NBF4   B4LBX2   A0A182PGF5   A0A3B0KUL4   B4PEC2   A0A182QPT3   A0A182JUZ2   B3M755   B4N307   A0A1A9Z4J4   B4KV02   A0A1B0F9U2   A0A1B0AKI5   A0A1A9VEC2   A0A1B0BFI1   A0A182XD40   A0A182UJV6   Q5TRR4   A0A182RX30   A0A182HMH4   A0A182VL23   A0A084VAU0   Q2LYU0   B4J0J1   A0A182YPZ2   A0A0R3P5G5   A0A182WAJ7   A0A182MI61   A0A182N7Y3   T1ISG8   A0A1A9W7J7   A0A1I8NB59   A0A182FHA6   A0A0L0CF00   A0A1J1I5Q0   D7EJZ7   A0A1I8PPJ7   W5JIP2   A0A131Y0L6   A0A147BMA5   A0A067RFG0   A0A0V1GW14   A0A0V1N8M8   A0A0K2TVY2   A0A0V1N7V3   A0A0V1N841   E0VLV6   B7Q8U1   A0A0V1GVW5   A0A0V0TP49   A0A0V1GVJ3   A0A0V1GW08   A0A0V1GVV6   A0A0V1AG17   A0A0V1AG32   N6TQB8   A0A0V0X6A3   A0A0V1NVW4   A0A0V1LV56   J9L180   A0A224XHN2   A0A0M4EC07   A0A0N5E211   A0A0V1BWV4   A0A0V1D0D9   A0A0V1D0C5   W5U640   U4UJF4   A0A2S2QQN7   A0A3B4BQU6   A0A3B4BQG8   A0A3B4BLU9   A0A3Q1AR83   A0A3P8SZX4   A0A1B6EBJ3   A0A1B6D0F4   A0A210PPZ5   B3DK94   A0A1B6CK41   A0A1W4YLQ0   A0A1W4YW35   A0A1X7UFI5   A0A3B4BGA9   Q5RHH4  

Pubmed

19121390    26354079    17510324    10731132    12537572    17994087    + More
22936249    17550304    12364791    14747013    17210077    24438588    15632085    25244985    25315136    26108605    18362917    19820115    20920257    23761445    29652888    24845553    20566863    23537049    23127152    28812685    25463417    15269167    23594743    24140113   

EMBL

BABH01011905    RSAL01000137    RVE46188.1    NWSH01000021    PCG80678.1    ODYU01006762    + More
SOQ48901.1    KQ459606    KPI91679.1    CH477327    EAT43464.1    CH477329    EAT43404.1    AE014296    CH480817    EDW50172.1    CM002912    KMY97056.1    KMY97058.1    KMY97057.1    DS231817    EDS39627.1    CH954178    EDV50276.1    CH940647    EDW69772.1    OUUW01000012    SPP87638.1    CM000159    EDW92960.1    AXCN02000907    CH902618    EDV38716.1    CH964062    EDW78746.1    CH933809    EDW18313.1    CCAG010018360    JXJN01025783    JXJN01013485    AAAB01008960    EAL39797.1    APCN01004435    ATLV01004460    KE524214    KFB35084.1    CH379069    EAL29770.2    CH916366    EDV96827.1    KRT08360.1    AXCM01002609    JH431432    JRES01000493    KNC30792.1    CVRI01000042    CRK95655.1    DS497723    EFA12908.1    ADMH02001057    ETN64252.1    GEFM01003764    JAP72032.1    GEGO01003495    JAR91909.1    KK852721    KDR17746.1    JYDP01000232    KRZ02367.1    JYDO01000004    KRZ80046.1    HACA01012180    CDW29541.1    KRZ80045.1    KRZ80047.1    DS235281    EEB14362.1    ABJB010099173    ABJB010179507    ABJB010422567    ABJB010475508    ABJB010600645    ABJB010696855    ABJB010818241    ABJB010917940    ABJB011057937    ABJB011105378    DS886054    EEC15263.1    KRZ02369.1    JYDJ01000189    KRX40774.1    KRZ02366.1    KRZ02365.1    KRZ02368.1    JYDQ01000001    KRY23782.1    KRY23781.1    APGK01055682    APGK01055683    KB741269    ENN71435.1    JYDK01000012    KRX83551.1    JYDM01000089    KRZ88148.1    JYDW01000003    KRZ63058.1    ABLF02025628    ABLF02025629    ABLF02025630    ABLF02025631    GFTR01008877    JAW07549.1    CP012525    ALC42884.1    JYDH01000008    KRY41446.1    JYDI01000062    KRY54929.1    KRY54928.1    JT406107    AHH37456.1    KB632330    ERL92593.1    GGMS01010883    MBY80086.1    GEDC01002054    JAS35244.1    GEDC01018223    JAS19075.1    NEDP02005561    OWF38575.1    BC163767    AAI63767.1    GEDC01023434    JAS13864.1    AY618923    BX511178   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053268    UP000008820    UP000192221    + More
UP000000803    UP000001292    UP000002320    UP000008711    UP000008792    UP000075885    UP000268350    UP000002282    UP000075886    UP000075881    UP000007801    UP000007798    UP000092445    UP000009192    UP000092444    UP000092460    UP000078200    UP000076407    UP000075902    UP000007062    UP000075900    UP000075840    UP000075903    UP000030765    UP000001819    UP000001070    UP000076408    UP000075920    UP000075883    UP000075884    UP000091820    UP000095301    UP000069272    UP000037069    UP000183832    UP000007266    UP000095300    UP000000673    UP000027135    UP000055024    UP000054843    UP000009046    UP000001555    UP000055048    UP000054783    UP000019118    UP000054673    UP000054924    UP000054721    UP000007819    UP000092553    UP000046395    UP000054776    UP000054653    UP000221080    UP000030742    UP000261440    UP000257160    UP000265080    UP000242188    UP000192224    UP000007879    UP000261520    UP000000437   

PRIDE

H9JQE4    Q9W040    B7Q8U1    Q5RHH4   

Pfam

PF12894   ANAPC4_WD40        + More
PF00400   WD40
PF05076   SUFU
PF12470   SUFU_C
PF13360   PQQ_2
PF00069   Pkinase
PF13181   TPR_8
PF05018   DUF667
PF00067   p450
PF04053   Coatomer_WDAD

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR036322   WD40_repeat_dom_sf       
IPR024977   Apc4_WD40_dom       
IPR017986   WD40_repeat_dom       
IPR017956   AT_hook_DNA-bd_motif       
IPR038489   SUFU_C_sf       
IPR018391   PQQ_beta_propeller_repeat       
IPR024314   SUFU_C       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR000719   Prot_kinase_dom       
IPR020941   SUFU-like_domain       
IPR011009   Kinase-like_dom_sf       
IPR037181   SUFU_N       
IPR008271   Ser/Thr_kinase_AS       
IPR002372   PQQ_repeat       
IPR017441   Protein_kinase_ATP_BS       
IPR019734   TPR_repeat       
IPR007714   CFA20_dom       
IPR036396   Cyt_P450_sf       
IPR017972   Cyt_P450_CS       
IPR001128   Cyt_P450       
IPR002401   Cyt_P450_E_grp-I       
IPR011044   Quino_amine_DH_bsu       
IPR006692   Coatomer_WD-assoc_reg       
IPR016024   ARM-type_fold       

SUPFAM

SSF50978   SSF50978        + More
SSF48452   SSF48452       
SSF50998   SSF50998       
SSF56112   SSF56112       
SSF103359   SSF103359       
SSF48264   SSF48264       
SSF50969   SSF50969       
SSF48371   SSF48371       

Gene 3D

1.25.40.10     2.130.10.10     3.30.1360.230     1.10.630.10    

ProteinModelPortal

H9JQE4   A0A3S2NAW4   A0A2A4K9V4   A0A2H1W743   A0A194PG50   A0A1S4F9Q5   + More
Q17B06   A0A1W4W4F3   Q17AW7   Q9W040   B4HW57   A0A0J9RMB7   A0A0J9RMU1   B0W088   B3NBF4   B4LBX2   A0A182PGF5   A0A3B0KUL4   B4PEC2   A0A182QPT3   A0A182JUZ2   B3M755   B4N307   A0A1A9Z4J4   B4KV02   A0A1B0F9U2   A0A1B0AKI5   A0A1A9VEC2   A0A1B0BFI1   A0A182XD40   A0A182UJV6   Q5TRR4   A0A182RX30   A0A182HMH4   A0A182VL23   A0A084VAU0   Q2LYU0   B4J0J1   A0A182YPZ2   A0A0R3P5G5   A0A182WAJ7   A0A182MI61   A0A182N7Y3   T1ISG8   A0A1A9W7J7   A0A1I8NB59   A0A182FHA6   A0A0L0CF00   A0A1J1I5Q0   D7EJZ7   A0A1I8PPJ7   W5JIP2   A0A131Y0L6   A0A147BMA5   A0A067RFG0   A0A0V1GW14   A0A0V1N8M8   A0A0K2TVY2   A0A0V1N7V3   A0A0V1N841   E0VLV6   B7Q8U1   A0A0V1GVW5   A0A0V0TP49   A0A0V1GVJ3   A0A0V1GW08   A0A0V1GVV6   A0A0V1AG17   A0A0V1AG32   N6TQB8   A0A0V0X6A3   A0A0V1NVW4   A0A0V1LV56   J9L180   A0A224XHN2   A0A0M4EC07   A0A0N5E211   A0A0V1BWV4   A0A0V1D0D9   A0A0V1D0C5   W5U640   U4UJF4   A0A2S2QQN7   A0A3B4BQU6   A0A3B4BQG8   A0A3B4BLU9   A0A3Q1AR83   A0A3P8SZX4   A0A1B6EBJ3   A0A1B6D0F4   A0A210PPZ5   B3DK94   A0A1B6CK41   A0A1W4YLQ0   A0A1W4YW35   A0A1X7UFI5   A0A3B4BGA9   Q5RHH4  

KEGG

101745689    K19676 intraflagellar transport protein 172 | (RefSeq) intraflagellar transport protein osm-1

GO

GO:0031514   GO:1905515   GO:0005929   GO:0007018   GO:0060271   GO:0030990   GO:0042073   GO:0005871   GO:0007275   GO:0097730   GO:0005930   GO:0036064   GO:0030992   GO:0005524   GO:0003677   GO:0004672   GO:0020037   GO:0005506   GO:0016705   GO:0006886   GO:0030117   GO:0016192   GO:0005198   GO:0048793   GO:0032006   GO:0060041   GO:0045494   GO:0016021   GO:0005515  

Subcellular location

  

Length:

706

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08984

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00045

outside

1  -  706

 

 

Pi

183.542251

Theta

164.536488

Tajima's D

0.229733

CLR

0.265062

CSRT

0.433978301084946

Interpretation

Uncertain