Gene

KWMTBOMO06718  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011750

Annotation

PREDICTED:_intraflagellar_transport_protein_osm-1_[Bombyx_mori]

Location

Bomo_Chr11(-):13089754-13095049      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.503

CDS

ATGGAAGGAATCGATATTGAAACTGAAGACGTCCCAGAAGCTTTGTCTCAAGTGTTGGAGACTTTGCGTCACTATCTGAGCCGCGAGGACTCTGAAGGCGGAGCGGTCGTGTCCGGTAGCGACGCGGGCCTAGCTCGGGCGGTCTGCAGCGAGGTCCTAGTGCGGGCTTCTACGGCACCTAAGGCCTTCGCCGCGCTTACTGATGCAGCTGACGTTATGCTGACGGCCGGCGCTGACGATAGAGCTTTGCAGGCAGTCACGTTACTCATGGCGCTTCATTTGCCGCAAATATCTGGTAAAGCTGCGCGGGCTTTGCCACGGTACACGGATATCATTGTGGCTGATGTCGCGTTCTACGCTTGTGGGACGGCGGTACGTACTGAAGGCAGTGCGGGGGCTCGAGAAGCCTTCGTGCTGTTGAATCGATGTCTGGATCTCGCTGAGGCTGCTGACGAGGATTCTGCTCATTTACTTGATTATACGGATTTTGAATGTACAGACTGGTCACGGCAGCCGCTTCTGTTGGAACGCGGTTGTGTGAGCGGCGGAGCGCTGGAAGACGTGAGAGAATGGGTCCTCGCAGTTTCTATGGACCAATCCGTTGAACAGACATTGCCGGTGGACAGTAGAGGATTGTATGCGTCGAGCGTGGCGGAGACGGAGCAGTGCTGCGTCGTCACCGGGTACCCGCTCGGCACTAGACTCGTCACTTTTACCAACGGTAGGTGCGCGAACCGCGAGTCGTGGTCGCGTGTGTCGAGCGCGGCGCGTGGAGGCGGCCCGGCCTCCGTGCTGCTGCGGCACGTGACGCGCTGGTGCGGTCCCGCCGACTACACGCAGCTATGA

Protein

MEGIDIETEDVPEALSQVLETLRHYLSREDSEGGAVVSGSDAGLARAVCSEVLVRASTAPKAFAALTDAADVMLTAGADDRALQAVTLLMALHLPQISGKAARALPRYTDIIVADVAFYACGTAVRTEGSAGAREAFVLLNRCLDLAEAADEDSAHLLDYTDFECTDWSRQPLLLERGCVSGGALEDVREWVLAVSMDQSVEQTLPVDSRGLYASSVAETEQCCVVTGYPLGTRLVTFTNGRCANRESWSRVSSAARGGGPASVLLRHVTRWCGPADYTQL

Uniprot

H9JQE4   A0A2A4K9V4   A0A3S2NAW4   A0A2H1W743   A0A0N0PCQ5   A0A194PG50   + More
A0A0B7A452   A0A2D4GVF4   A0A1I8PPJ7   B4HW57   A0A151J3U9   F4X5V7   A0A151I2Z6   A0A151WN18   A0A026WHM9   A0A3L8DJV9   A0A0J7KE51   E2BS36   A0A2D4GVC2   A0A232FA46   E0VLV6   A0A2P8XDR1   A0A0P5T0Z7   A0A0N8BYA0   A0A0P5NCM6  

Pubmed

19121390    26354079    17994087    21719571    24508170    30249741    + More
20798317    28648823    20566863    29403074   

EMBL

BABH01011905    NWSH01000021    PCG80678.1    RSAL01000137    RVE46188.1    ODYU01006762    + More
SOQ48901.1    KQ460499    KPJ14299.1    KQ459606    KPI91679.1    HACG01028859    CEK75724.1    IACJ01158553    LAA63692.1    CH480817    EDW50172.1    KQ980246    KYN17116.1    GL888742    EGI58197.1    KQ976507    KYM82826.1    KQ982931    KYQ49210.1    KK107238    EZA54589.1    QOIP01000007    RLU20158.1    LBMM01008961    KMQ88504.1    GL450143    EFN81491.1    IACJ01158550    LAA63684.1    NNAY01000552    OXU27721.1    DS235281    EEB14362.1    PYGN01002653    PSN30135.1    GDIP01139274    JAL64440.1    GDIQ01133059    JAL18667.1    GDIQ01147351    JAL04375.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000095300    + More
UP000001292    UP000078492    UP000007755    UP000078540    UP000075809    UP000053097    UP000279307    UP000036403    UP000008237    UP000215335    UP000009046    UP000245037   

PRIDE

H9JQE4   

Pfam

PF00400   WD40

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR017986   WD40_repeat_dom       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR011044   Quino_amine_DH_bsu       

SUPFAM

SSF50978   SSF50978        + More
SSF48452   SSF48452       
SSF50998   SSF50998       
SSF50969   SSF50969       

Gene 3D

1.25.40.10     2.130.10.10    

ProteinModelPortal

H9JQE4   A0A2A4K9V4   A0A3S2NAW4   A0A2H1W743   A0A0N0PCQ5   A0A194PG50   + More
A0A0B7A452   A0A2D4GVF4   A0A1I8PPJ7   B4HW57   A0A151J3U9   F4X5V7   A0A151I2Z6   A0A151WN18   A0A026WHM9   A0A3L8DJV9   A0A0J7KE51   E2BS36   A0A2D4GVC2   A0A232FA46   E0VLV6   A0A2P8XDR1   A0A0P5T0Z7   A0A0N8BYA0   A0A0P5NCM6  

KEGG

101745689    K19676 intraflagellar transport protein 172 | (RefSeq) intraflagellar transport protein osm-1

GO

GO:0031514   GO:1905515   GO:0097730   GO:0042073  

Length:

281

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01387

Exp number, first 60 AAs:

0.00028

Total prob of N-in:

0.02348

outside

1  -  281

 

 

Pi

202.004395

Theta

159.522383

Tajima's D

0.699958

CLR

0

CSRT

0.575821208939553

Interpretation

Uncertain