Gene

KWMTBOMO06711

Pre Gene Modal

BGIBMGA011736

Annotation

PREDICTED:_DNA_polymerase_delta_subunit_2_[Amyelois_transitella]

Location

Bomo_Chr11(+):12883220-12885764      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.701

CDS

ATGCTTTTAAAAGTATCGCCGAAATCAACAGCAGATGAGGAATTCTCTTCCCACGATCTAGAGAGACAAATTGTTGACTACACTGATAGTTCTACACGGTTTTATGAAGCACCACGAGATTTTTCCAAGCAGTACGCCCATATATATTCAGCTAGGTTATGTACATTCCGAAATATTTTGACTCCGCTGATAAAAAATAAGTGGTCAAATAAATACAAGATTTTAAAGCTTTGTGATTTACGTGAAAGCGGTACCTCTTGTGTTATAATTGGAACACTGTTCAAACTGCAAGAATTGAAACCAAGCATTCTGAAAGAGCTTTCAGATCAGCTTGAGATTATACCACAACCAACTAGGACTCATTTCGTCCATGATTCCGATAGCCTTGTGTTAGAAGATGAATTGCAAAGAATCAAACTTGTAAGCGATGTTATAGATATCCATCAAGTAGTCACTGGAGTTGTATGTGCAATTTTAGGATCTGAAGATGAGGATGGTATATTTACTGTTAAAGATGTCTGTTGGCCTGGTTGCAGTATACAAAAACCACTTCCAGTTAGAAATGAAGACAGATACATAGTACTTATGTCGGGTTTAAATATGGCATCAAAGTCTGCAGATCAAATTTTGTCCTTGCACTTATTTTTGGAATGGATGTCAGGATTAGCAGGCACATCTTATTATCAAGAAGAAGTTTCTAAAATTGTACGAGTTATAATAGCCGGTGGAGTGTTTGCAAATCATTCAGATGAAAGTGTTCTAAATGAATCAGATGTCATATCGTCAGCAGAATTGGTGGATTCATTGGCAGCAGCTATTAGTGGTGTGGCTCCTTTAGACATAATGCCAGGATGCAAAGATCCTAATGATGTAATGTTACCACAAAAACCTTTTCATTACTGTTTGTTCCCTAAAGCTACTGAATACAAATCGTTCCGCCGTGTTTCTAATCCTTATGAATGTGAAATAGGAGGGTTGTTATGTTTAGGTACTTCAGGAGAGCCAGTAAAGGATATAATGAGATATAGTAACTTAGATAATAGTCAAGAGGTACTTAAAAAAACATTGGAATGGAGGCATTTAGCACCAACATGTCCTGATACGGTACCTTGTACCCCAAGTGTGGATACAGATCCATTTATTATTTATAACTGTCCAGCTATTTATTTTAGTGGAAATGCTGATGAATTTGGAACTACCTTATATGAAGGAGAAGAAGGGCAACGCATCAGAATAGTATCAATTCCAGATTTTTGTAATACTAAATCGATAGCAATTATCAATTTAGCAAATTTGGAATGTTACAGCATGAGTTTTTCTTGA

Protein

MLLKVSPKSTADEEFSSHDLERQIVDYTDSSTRFYEAPRDFSKQYAHIYSARLCTFRNILTPLIKNKWSNKYKILKLCDLRESGTSCVIIGTLFKLQELKPSILKELSDQLEIIPQPTRTHFVHDSDSLVLEDELQRIKLVSDVIDIHQVVTGVVCAILGSEDEDGIFTVKDVCWPGCSIQKPLPVRNEDRYIVLMSGLNMASKSADQILSLHLFLEWMSGLAGTSYYQEEVSKIVRVIIAGGVFANHSDESVLNESDVISSAELVDSLAAAISGVAPLDIMPGCKDPNDVMLPQKPFHYCLFPKATEYKSFRRVSNPYECEIGGLLCLGTSGEPVKDIMRYSNLDNSQEVLKKTLEWRHLAPTCPDTVPCTPSVDTDPFIIYNCPAIYFSGNADEFGTTLYEGEEGQRIRIVSIPDFCNTKSIAIINLANLECYSMSFS

Uniprot

A0A0L7LMU8   A0A2A4K8S2   H9JQD0   A0A212FGV8   A0A2H1X0X6   A0A194R0S2   + More
A0A1E1W178   A0A2J7QGT2   A0A067QYD2   A0A1B6EDL9   A0A084VL07   A0A182MZ74   Q171R4   Q16LF7   A0A2J7QGU1   A0A2J7QGV9   B0WRQ1   A0A182RSJ8   U5EZ90   Q171R3   A0A182Y0B4   A0A182GMS4   A0A182I7A9   A0A1S4H0C4   A0A182QLC1   A0A182JUM2   A0A3Q2QHJ7   A0A146TLB3   A0A147ASV8   A0A3Q3N7F0   T1JK30   A0A1A8CH63   A0A1A8DMG3   A0A182VUD8   A0A146RGD1   Q7PWN0   A0A1A8AEC5   A0A1A7Z0K6   A0A1Q3F468   A0A1A8KAU5   A0A1A7W7F6   A0A182LMV2   A0A1A8HTH4   A0A1A8RX02   A0A182XNQ0   A0A1A8QYG3   A0A182MAG6   A0A0M3QWW1   A0A2M4ALX3   A0A2M4ALT6   A0A182P8B2   A0A3Q2CCX5   A0A1A8G804   A0A3Q2DQ25   G3PDF4   A0A023GK92   G3MPU5   W5J5Z3   A0A131XQT0   A0A224YUY8   A0A131YYR5   B3M7A7   H2SLX8   A0A182F1D9   A0A3Q0SVN9   A0A0C9SCI0   A0A3B4GPW1   A0A3P9BUM5   A0A1A9ZX72   A0A210QCJ4   A0A3P8PKS4   A0A3B5M948   A0A3Q1FTT8   A0A3Q1BN81   A0A087X794   A0A3Q3BYE6   A0A3P8SUV0   A0A3B3TXT8   A0A087YEN4   A0A3B3Z3X4   I3JXJ0   A0A3B3C0L5   A0A3B4XHA9   A0A0F8CHT6   A0A3Q2ZJE9   A0A3Q1JGU5   A0A3P8VTI7   B4HW00   A0A087ZZH8   M4ALP2   A0A1B0G6P3   A0A3Q4HJW9   A0A3Q3ID17   A0A1W4VTP4   A0A3P9LQX6   A0A3B3HC50   A0A1A9VY19   B4PDT8  

Pubmed

26227816    19121390    22118469    26354079    24845553    24438588    + More
17510324    25244985    26483478    12364791    20966253    22216098    20920257    23761445    28049606    28797301    26830274    17994087    21551351    26131772    25186727    28812685    29451363    25835551    24487278    23542700    17554307    17550304   

EMBL

JTDY01000593    KOB76546.1    NWSH01000021    PCG80685.1    BABH01011923    AGBW02008592    + More
OWR52976.1    ODYU01012500    SOQ58846.1    KQ460883    KPJ11109.1    GDQN01010380    JAT80674.1    NEVH01014359    PNF27795.1    KK852879    KDR14460.1    GEDC01011901    GEDC01001318    JAS25397.1    JAS35980.1    ATLV01014395    KE524970    KFB38651.1    CH477447    EAT40754.1    CH477908    EAT35141.1    PNF27797.1    PNF27793.1    DS232058    EDS33455.1    GANO01001220    JAB58651.1    EAT40753.1    JXUM01075043    KQ562865    KXJ74978.1    APCN01003375    AAAB01008984    AXCN02002068    GCES01092653    JAQ93669.1    GCES01005151    JAR81172.1    JH432018    HADZ01014144    SBP78085.1    HAEA01005956    SBQ34436.1    GCES01119302    JAQ67020.1    EAA14861.4    HADY01014100    HAEJ01009575    SBP52585.1    HADX01013797    SBP36029.1    GFDL01012718    JAV22327.1    HAEE01009423    SBR29473.1    HADW01000502    SBP01902.1    HAED01001835    SBQ87680.1    HAEH01019858    SBS09878.1    HAEG01014913    SBR98840.1    AXCM01000345    CP012525    ALC44809.1    GGFK01008459    MBW41780.1    GGFK01008432    MBW41753.1    HAEB01020686    SBQ67213.1    GBBM01001112    JAC34306.1    JO843896    AEO35513.1    ADMH02002157    ETN58219.1    GEFH01000046    JAP68535.1    GFPF01007275    MAA18421.1    GEDV01004420    JAP84137.1    CH902618    EDV38768.1    GBZX01001323    JAG91417.1    NEDP02004182    OWF46452.1    AYCK01029412    AYCK01000978    AERX01013656    KQ040911    KKF33249.1    CH480817    EDW50115.1    CCAG010015978    CM000159    EDW92903.1   

Proteomes

UP000037510    UP000218220    UP000005204    UP000007151    UP000053240    UP000235965    + More
UP000027135    UP000030765    UP000075884    UP000008820    UP000002320    UP000075900    UP000076408    UP000069940    UP000249989    UP000075840    UP000075886    UP000075881    UP000265000    UP000261660    UP000075920    UP000007062    UP000075882    UP000076407    UP000075883    UP000092553    UP000075885    UP000265020    UP000007635    UP000000673    UP000007801    UP000005226    UP000069272    UP000261340    UP000261460    UP000265160    UP000092445    UP000242188    UP000265100    UP000261380    UP000257200    UP000257160    UP000028760    UP000264840    UP000265080    UP000261500    UP000261480    UP000005207    UP000261560    UP000261360    UP000264800    UP000265040    UP000265120    UP000001292    UP000005203    UP000002852    UP000092444    UP000261580    UP000261600    UP000192221    UP000265180    UP000001038    UP000078200    UP000002282   

PRIDE

H9JQD0   

Pfam

PF04042   DNA_pol_E_B        + More
PF18018   DNA_pol_D_N

Interpro

IPR024826   DNA_pol_delta/II_ssu        + More
IPR007185   DNA_pol_a/d/e_bsu       
IPR040663   DNA_pol_D_N       
IPR041863   PolD2_C       

CDD

cd07387  MPP_PolD2_C

ProteinModelPortal

A0A0L7LMU8   A0A2A4K8S2   H9JQD0   A0A212FGV8   A0A2H1X0X6   A0A194R0S2   + More
A0A1E1W178   A0A2J7QGT2   A0A067QYD2   A0A1B6EDL9   A0A084VL07   A0A182MZ74   Q171R4   Q16LF7   A0A2J7QGU1   A0A2J7QGV9   B0WRQ1   A0A182RSJ8   U5EZ90   Q171R3   A0A182Y0B4   A0A182GMS4   A0A182I7A9   A0A1S4H0C4   A0A182QLC1   A0A182JUM2   A0A3Q2QHJ7   A0A146TLB3   A0A147ASV8   A0A3Q3N7F0   T1JK30   A0A1A8CH63   A0A1A8DMG3   A0A182VUD8   A0A146RGD1   Q7PWN0   A0A1A8AEC5   A0A1A7Z0K6   A0A1Q3F468   A0A1A8KAU5   A0A1A7W7F6   A0A182LMV2   A0A1A8HTH4   A0A1A8RX02   A0A182XNQ0   A0A1A8QYG3   A0A182MAG6   A0A0M3QWW1   A0A2M4ALX3   A0A2M4ALT6   A0A182P8B2   A0A3Q2CCX5   A0A1A8G804   A0A3Q2DQ25   G3PDF4   A0A023GK92   G3MPU5   W5J5Z3   A0A131XQT0   A0A224YUY8   A0A131YYR5   B3M7A7   H2SLX8   A0A182F1D9   A0A3Q0SVN9   A0A0C9SCI0   A0A3B4GPW1   A0A3P9BUM5   A0A1A9ZX72   A0A210QCJ4   A0A3P8PKS4   A0A3B5M948   A0A3Q1FTT8   A0A3Q1BN81   A0A087X794   A0A3Q3BYE6   A0A3P8SUV0   A0A3B3TXT8   A0A087YEN4   A0A3B3Z3X4   I3JXJ0   A0A3B3C0L5   A0A3B4XHA9   A0A0F8CHT6   A0A3Q2ZJE9   A0A3Q1JGU5   A0A3P8VTI7   B4HW00   A0A087ZZH8   M4ALP2   A0A1B0G6P3   A0A3Q4HJW9   A0A3Q3ID17   A0A1W4VTP4   A0A3P9LQX6   A0A3B3HC50   A0A1A9VY19   B4PDT8  

PDB

3E0J     E-value=2.11036e-88,     Score=831

KEGG

101745581    K02328 DNA polymerase delta subunit 2 | (RefSeq) DNA polymerase delta subunit 2

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03410    Base excision repair - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
03430    Mismatch repair - Bombyx mori (domestic silkworm)
03440    Homologous recombination - Bombyx mori (domestic silkworm)

GO

GO:0006260   GO:0003677   GO:0003887   GO:0043625   GO:0006271   GO:0008242   GO:0016705   GO:0020037   GO:0006811   GO:0016020   GO:0005634  

PANTHER

PTHR10416  

Length:

440

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01131

Exp number, first 60 AAs:

0.00046

Total prob of N-in:

0.00315

outside

1  -  440

 

 

Pi

228.919847

Theta

173.639912

Tajima's D

1.126935

CLR

0.086359

CSRT

0.693415329233538

Interpretation

Uncertain