Gene

KWMTBOMO06707

Pre Gene Modal

BGIBMGA011753

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_DNA-directed_RNA_polymerase_III_subunit_RPC8_[Bombyx_mori]

Location

Bomo_Chr11(-):12851874-12853749      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.77

CDS

ATGTTTGTATTAGCTGAAATGAAAGATGTTATTCGAGTTAATCCAGAATACTTTCGTCAAAGTCTAACTGATTCTATAACAACTTTACTCAACAGAAAGTTAGCTAATAAGGTTGTGTTAGAAGTAGGTTTATGTATTGTACTGTTTGACATAACCAATGTTGGACACTCGTACATATTCCCTGGAGACGGTTCATCTCACACAGAGGTGAAATTTAGATATATCGTGTTTCGACCTATTATTGAAGAGATACTTATAGGAAAAATAAGGAGCTGCAGTAGAGAAGGCGTGCACGTGACATTAGGCTTTTTCGATGATATATTAATACCAGTAAATGCTCTTCAGCATCCGTCTAGATTTGACGAAACCGATCAAGCATGGGTATGGGAATATCCTAAGGAAGATGGAGAAAAACATGATTTGTTCATGGACTCGGGTGAATCAATAAGATTTCGAGTGACAAGTGAGTTTTTTGAAGAGAGCTTACCAACAGGTCCTCCAGGAACAGATTGTACAGTACAAACGGTAGCACCTTATAGACTGATTGGAGGAATAAATGAACCAGGACTTGGACTTTTAACCTGGTGGGAGACACCAGATCAAGAGGGTGAAGAGGATGAAATAGATGATGAATAA

Protein

MFVLAEMKDVIRVNPEYFRQSLTDSITTLLNRKLANKVVLEVGLCIVLFDITNVGHSYIFPGDGSSHTEVKFRYIVFRPIIEEILIGKIRSCSREGVHVTLGFFDDILIPVNALQHPSRFDETDQAWVWEYPKEDGEKHDLFMDSGESIRFRVTSEFFEESLPTGPPGTDCTVQTVAPYRLIGGINEPGLGLLTWWETPDQEGEEDEIDDE

Uniprot

S4PYA9   A0A1E1W3B3   A0A2A4KAC8   A0A2H1WWS1   A0A3S2PKQ8   A0A0N1PH75   + More
A0A194PVN6   A0A212FGV7   A0A0L7LRM7   D6WDC2   A0A1W4WXJ1   A0A067R5A3   A0A088A9R7   A0A2A3ENP7   A0A182G6U1   Q16NU0   A0A0L7QWZ6   A0A2J7QGT5   T1GDA6   A0A1I8PVG9   B0WLD7   A0A1Q3F2T1   A0A1I8MRC1   J3JZD9   A0A182P1H3   A0A1Y1MJY6   W5JQA9   A0A0A1XBB3   A0A2M4B002   A0A182R9D9   A0A2M4BXW5   A0A3B0JSV3   A0A2M4BXX3   A0A034WDN0   A0A084WM58   A0A0K8WKC4   A0A182FC26   Q9VTL6   A0A232FCY1   A0A182MMY1   B4HEW6   B4QQ91   A0A0L0C6H2   B4PFM1   B3NGY6   A0A182WD51   A0A1W4W7I7   A0A182K0U5   B4HAI1   A0A1B0D585   A0A182N331   A0A182YC75   A0A182Q9L2   A0A182VG47   A0A182UET4   A0A182X047   Q7PZW7   A0A182HPN1   W8C0R7   A0A1B0C9D3   B3M4A4   Q2LZ71   A0A1B0B8T1   A0A1A9URN9   D3TQV3   B4J2J2   A0A1B0A6Y2   A0A1L8DGS7   A0A0M5IZ77   A0A1B0C9D4   A0A026WFK3   B4N3C0   A0A182J442   A0A336LUE8   G1S030   A0A158NDC0   B4KUR7   B4LCQ3   A0A1B0B6P1   E0VAN9   A0A1B0FIC3   A0A2K6B0G8   A0A096NKB0   A0A2K5KYD1   A0A2J8TWQ4   G7PFN5   F7BKF0   A0A2K6PSD0   A0A195FHW9   A0A151I105   A0A2K5J3F3   A0A2J8TWQ0   F4WSN3   A0A195C0N1   A0A0D9R0G8   R7VB25   A0A2K5D0J7   A0A2K5QJN5   A0A2K6SJ30  

Pubmed

23622113    26354079    22118469    26227816    18362917    19820115    + More
24845553    26483478    17510324    25315136    22516182    23537049    28004739    20920257    23761445    25830018    25348373    24438588    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28648823    17994087    22936249    26108605    17550304    25244985    12364791    14747013    17210077    24495485    15632085    20353571    24508170    30249741    21347285    20566863    17194215    22002653    17431167    25319552    25362486    21719571    23254933   

EMBL

GAIX01003608    JAA88952.1    GDQN01009588    JAT81466.1    NWSH01000021    PCG80690.1    + More
ODYU01011599    SOQ57442.1    RSAL01000006    RVE54191.1    KQ460499    KPJ14308.1    KQ459590    KPI97451.1    AGBW02008593    OWR52967.1    JTDY01000241    KOB78097.1    KQ971321    EEZ99545.1    KK852879    KDR14462.1    KZ288212    PBC32872.1    JXUM01027850    JXUM01045624    KQ561445    KQ560803    KXJ78562.1    KXJ80836.1    CH477809    EAT36016.1    KQ414705    KOC63148.1    NEVH01014359    PNF27787.1    CAQQ02058119    DS231984    EDS30430.1    GFDL01013183    JAV21862.1    APGK01034463    BT128620    KB740914    KB631869    AEE63577.1    ENN78329.1    ERL86837.1    GEZM01029595    JAV86059.1    ADMH02000414    ETN66602.1    GBXI01006167    JAD08125.1    GGFK01012827    MBW46148.1    GGFJ01008712    MBW57853.1    OUUW01000002    SPP76779.1    GGFJ01008713    MBW57854.1    GAKP01006163    JAC52789.1    ATLV01024388    KE525351    KFB51302.1    GDHF01001014    JAI51300.1    AE014296    AY118479    AAF50032.1    AAM49848.1    NNAY01000462    OXU28207.1    AXCM01004726    CH480815    EDW41135.1    CM000363    CM002912    EDX10109.1    KMY99035.1    JRES01000836    KNC27851.1    CM000159    EDW94170.1    CH954178    EDV51443.1    CH479240    EDW37579.1    AJVK01003414    AXCN02001131    AAAB01008986    EAA00210.3    APCN01003266    GAMC01001268    JAC05288.1    AJWK01002228    CH902618    EDV39374.1    CH379069    EAL29638.1    JXJN01010047    EZ423805    ADD20081.1    CH916366    EDV97077.1    GFDF01008514    JAV05570.1    CP012525    ALC45048.1    AJWK01002229    KK107235    QOIP01000009    EZA54895.1    RLU18607.1    CH964062    EDW78859.1    UFQT01000131    SSX20621.1    ADFV01024947    ADFV01024948    ADFV01024949    ADTU01012582    CH933809    EDW19323.1    CH940647    EDW70945.1    JXJN01009182    DS235012    EEB10445.1    CCAG010023484    AHZZ02001311    AHZZ02001312    NDHI03003480    PNJ37455.1    PNJ37457.1    PNJ37461.1    AQIA01006810    AB171352    CM001285    BAE88415.1    EHH65879.1    JSUE03005612    JU333220    JU474539    JV046339    CM001262    AFE76975.1    AFH31343.1    AFI36410.1    EHH20273.1    KQ981560    KYN39973.1    KQ976599    KYM79494.1    PNJ37456.1    GL888326    EGI62776.1    KQ978379    KYM94407.1    AQIB01148981    AQIB01148982    AMQN01004484    AMQN01004485    KB293638    ELU15722.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000007266    UP000192223    UP000027135    UP000005203    UP000242457    UP000069940    UP000249989    UP000008820    UP000053825    UP000235965    UP000015102    UP000095300    UP000002320    UP000095301    UP000019118    UP000030742    UP000075885    UP000000673    UP000075900    UP000268350    UP000030765    UP000069272    UP000000803    UP000215335    UP000075883    UP000001292    UP000000304    UP000037069    UP000002282    UP000008711    UP000075920    UP000192221    UP000075881    UP000008744    UP000092462    UP000075884    UP000076408    UP000075886    UP000075903    UP000075902    UP000076407    UP000007062    UP000075840    UP000092461    UP000007801    UP000001819    UP000092460    UP000078200    UP000001070    UP000092445    UP000092553    UP000053097    UP000279307    UP000007798    UP000075880    UP000001073    UP000005205    UP000009192    UP000008792    UP000009046    UP000092444    UP000233120    UP000028761    UP000233060    UP000009130    UP000233100    UP000006718    UP000233200    UP000078541    UP000078540    UP000233080    UP000007755    UP000078542    UP000029965    UP000014760    UP000233020    UP000233040    UP000233220   

PRIDE

Q9VTL6   

Pfam

PF03876   SHS2_Rpb7-N        + More
PF08292   RNA_pol_Rbc25
PF02167   Cytochrom_C1

Interpro

IPR005576   Rpb7-like_N        + More
IPR013238   RNA_pol_III_Rbc25       
IPR012340   NA-bd_OB-fold       
IPR004519   RNAP_E/RPC8       
IPR036898   RNA_pol_Rpb7-like_N_sf       
IPR003029   S1_domain       
IPR009056   Cyt_c-like_dom       
IPR002326   Cyt_c1       
IPR036909   Cyt_c-like_dom_sf       
IPR021157   Cyt_c1_TM_anchor_C       

SUPFAM

SSF88798   SSF88798        + More
SSF50249   SSF50249       
SSF46626   SSF46626       
SSF81496   SSF81496       

Gene 3D

3.30.1490.120     1.10.760.10    

ProteinModelPortal

S4PYA9   A0A1E1W3B3   A0A2A4KAC8   A0A2H1WWS1   A0A3S2PKQ8   A0A0N1PH75   + More
A0A194PVN6   A0A212FGV7   A0A0L7LRM7   D6WDC2   A0A1W4WXJ1   A0A067R5A3   A0A088A9R7   A0A2A3ENP7   A0A182G6U1   Q16NU0   A0A0L7QWZ6   A0A2J7QGT5   T1GDA6   A0A1I8PVG9   B0WLD7   A0A1Q3F2T1   A0A1I8MRC1   J3JZD9   A0A182P1H3   A0A1Y1MJY6   W5JQA9   A0A0A1XBB3   A0A2M4B002   A0A182R9D9   A0A2M4BXW5   A0A3B0JSV3   A0A2M4BXX3   A0A034WDN0   A0A084WM58   A0A0K8WKC4   A0A182FC26   Q9VTL6   A0A232FCY1   A0A182MMY1   B4HEW6   B4QQ91   A0A0L0C6H2   B4PFM1   B3NGY6   A0A182WD51   A0A1W4W7I7   A0A182K0U5   B4HAI1   A0A1B0D585   A0A182N331   A0A182YC75   A0A182Q9L2   A0A182VG47   A0A182UET4   A0A182X047   Q7PZW7   A0A182HPN1   W8C0R7   A0A1B0C9D3   B3M4A4   Q2LZ71   A0A1B0B8T1   A0A1A9URN9   D3TQV3   B4J2J2   A0A1B0A6Y2   A0A1L8DGS7   A0A0M5IZ77   A0A1B0C9D4   A0A026WFK3   B4N3C0   A0A182J442   A0A336LUE8   G1S030   A0A158NDC0   B4KUR7   B4LCQ3   A0A1B0B6P1   E0VAN9   A0A1B0FIC3   A0A2K6B0G8   A0A096NKB0   A0A2K5KYD1   A0A2J8TWQ4   G7PFN5   F7BKF0   A0A2K6PSD0   A0A195FHW9   A0A151I105   A0A2K5J3F3   A0A2J8TWQ0   F4WSN3   A0A195C0N1   A0A0D9R0G8   R7VB25   A0A2K5D0J7   A0A2K5QJN5   A0A2K6SJ30  

PDB

3AYH     E-value=1.72626e-39,     Score=405

KEGG

101746123    K03022 DNA-directed RNA polymerase III subunit RPC8 | (RefSeq) DNA-directed RNA polymerase III subun

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0003677   GO:0003899   GO:0006351   GO:0005666   GO:0006384   GO:0003676   GO:0005813   GO:0006383   GO:0005654   GO:0009055   GO:0046872   GO:0020037   GO:0008242   GO:0016705   GO:0006811   GO:0016020   GO:0005634   GO:0006260  

PANTHER

PTHR10266  

Length:

211

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.73761

Exp number, first 60 AAs:

1.7178

Total prob of N-in:

0.10618

outside

1  -  211

 

 

Pi

275.263078

Theta

177.717401

Tajima's D

2.133369

CLR

0

CSRT

0.901854907254637

Interpretation

Possibly Positive selection