Silkworm Genome Informatics Database

Gene

KWMTBOMO06705 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011754

Annotation

PREDICTED:_ATP-dependent_RNA_helicase_dbp2-like_[Papilio_xuthus]

Location

Bomo_Chr11(-):12826017-12830129 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.851

CDS

ATGCAGTACAACGGGTTTCACAATCAACATCCGATTTTCAGGCCTCAGCCAGACCGCAATGAACAATTCGGTAAAATTCCATACATTAAAGGTCTTCCTGATTTTGGAGGACCTAAAAACTTTGGACCAAGACCTAATATGATGAACAAAAACTTCAGACCTCGAAATGATTTTAATGAAGTAAAGAATGATTATAATACTAAAAATGATGGTAATCAGAATGATTTTGGTGGTCCAAAACAATTTAGACCCAGAAATAATTTTAACAATGGTAACCAACCACCAAAGAAAAACAACTTTAATGGAGACAAATCACCAGGAAATATGCAATATGGCAATAAAAATGATTTTGGCGGTCCTAAACAACAAAATTATAACAAGAATTATGGGCCTAAAACATACAACAACCAGAATTGCTATGGGAATGAGCAGCCTGAATTTATTCCTAGGCAATCTTACAGTCCAAACTCTGTTCAACATTCTTTGAATGATCGCAAACTACAGAGCAAAAAAGCAAAACATCCTGGTGATAGCTTGTTGAAGCCAATGTGGGATCTAACTAAATTAGAACCTATTCAGAAAGACTTTTACAAGCCTCATGTTAATGTAGATGCTCGCTCTGAGGACGATGTGCAAAGATTCCGTGTTACAAAAGAGATTACAGTTAGTGGCAATAATATCCCACGTCCTAACCAATTATTTGAGGAAGGAAACTTCCCCGACCACATTATGAGCACTATTAAGGAACAGCCAAATTTGATAGAGCCCACTGGTATTCAAGCTCAAGGTTGGCCAATAGCTTTATCAGGACGTGACATGGTTGGTATTGCCTCTACTGGTTCAGGAAAAACTTTAGCTTACATGTTGCCTGCGGCTGTGCATATTGTTCATCAACAGCGCATTCAGCGAGGAGATGGGCCAATTGCGCTTATTTTAGCACCTACTCGAGAACTGGCACAGCAAATCCAGTCAGTAGCCCAGGCTTACAGTGCTCGTGGTTGCATAAGAAACACATGCCTTTTTGGAGGTTCACCAAAAGGACCACAAGCCAGAGATTTAGAGCGAGGTGTTGAAATTGTTATTGCCACACCTGGAAGGTTAATTGATTTCCTTGAACGAGGCACTACTAACTTAAGACGCTGCACATATTTAGTTCTGGATGAAGCAGATAGAATGCTTGACATGGGATTTGAACCTCAAATCCGTAAGATAATTGAACAGATTCGCCCTGACCGTCAAGTACTGATGTGGTCTGCCACATGGCCTAAGGAAATACAGGCTTTGGCTGAAGATTTCTTGACCGATTACATCAAAGTTAATATTGGCTCCCTAAACTTGTCTGCCAACAACAACATCAAACAGATTATTGAGATTTGTGAAGAACATGAGAAGGAAGTAAAATTAACTAATTTATTAAAAGAAATTGCTTCTGAAAAAGAAAATAAAGTAATTGTATTTGTAGAGACAAAGAAAAAGGTGGATGATATTGCACGTGCAGTTCGACGCGGTGGATATAAGGCACTTGCTATTCATGGTGACAAATCCCAACCTGAACGTGATGCTGTTCTTACAGAATTCAGAAATGGTTCAACAACCATTCTGATTGCTACTGATGTCGCAGCTCGTGGTCTTGATGTTGAAGATGTCAAATTTGTTGTAAATTTTGACTACCCTAACTCTTCGGAAGACTATATTCATAGAATTGGTCGTACTGGACGGTGCCAACAATCTGGAACTGCATATACATACTTCACGAGTGGTGATTGCCGCCAAGCTCGAGGTCTGCTTGCAGTACTTCGGGAAACTGGACAAAATCCTCCAACTAAATTAGCTGATATGGCTAGAAATAATAACAATAATTCAGGTCGGAATCGCTGGCAACAACGCAAGGATAAAAATAGTGGATCCAACTCACCACAGCAAATGAGCAACCAATGGAACAACAAAATGGCCAATGGCAGCATTGAAGATGGTCAAAACATGTACCAAAATCGTAGCATGAACCAACAGGCACCACGATTTTCTAACCAGAACCAAGGAATTCAGAGTTACAGACAAAACAACTATCAGAAACAAGTACCTTTCCCAAGCCCCAATGTTTTCGAGTCCATGGGAAATTATCAAGGTGGATATAACAATGGTTACCAAAATACTTACAACCAAAATGGATATGGTCAACGGCCCTTCAACAACCAGCGTAATAATGGGCAACAATATCGTAACAATGGTACAAATGGCAACAAAGCCAGTGGCTCTGGTTCTTCATTTGGTTCCCCACCTCCACATTTTGCAACACCTCCTCATTACGCACAGGTGCATCCACATCATCAGGATATGCTTGGTGGAAAATTTTACGGTAGTGGTGTCGGTGGGGGCGGACCCTGTGGATATCAAGCTGCCGTGGGCGCTGGTGTTCCCTACCCGCACTTGCCCCCAGGGCCACTACTATATGCAGCCCCTGTTCAACAGTAA

Protein

MQYNGFHNQHPIFRPQPDRNEQFGKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNEQPEFIPRQSYSPNSVQHSLNDRKLQSKKAKHPGDSLLKPMWDLTKLEPIQKDFYKPHVNVDARSEDDVQRFRVTKEITVSGNNIPRPNQLFEEGNFPDHIMSTIKEQPNLIEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVHIVHQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSARGCIRNTCLFGGSPKGPQARDLERGVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEIQALAEDFLTDYIKVNIGSLNLSANNNIKQIIEICEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGGYKALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYTYFTSGDCRQARGLLAVLRETGQNPPTKLADMARNNNNNSGRNRWQQRKDKNSGSNSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQSYRQNNYQKQVPFPSPNVFESMGNYQGGYNNGYQNTYNQNGYGQRPFNNQRNNGQQYRNNGTNGNKASGSGSSFGSPPPHFATPPHYAQVHPHHQDMLGGKFYGSGVGGGGPCGYQAAVGAGVPYPHLPPGPLLYAAPVQQ

Similarity

Belongs to the DEAD box helicase family.

Uniprot

H9JQE8 A0A2H1WWK0 S4PXT7 A0A194PXG2 A0A0L7L2S9 A0A212FGW3 + More
C9E270 A0A194RHC0 A0A232EJE7 K7J4U6 R4WDI4 U5EZM7 A0A336KCZ1

Pubmed

19121390 23622113 26354079 26227816 22118469 28648823 + More
20075255 23691247

EMBL

BABH01011934 ODYU01011599 SOQ57440.1 GAIX01004468 JAA88092.1 KQ459590 + More
KPI97449.1 JTDY01003416 KOB69589.1 AGBW02008593 OWR52969.1 GQ452007 ACV83780.1 KQ460205 KPJ16839.1 NNAY01004047 OXU18442.1 AAZX01007814 AK417733 BAN20948.1 GANO01000504 JAB59367.1 UFQS01000315 UFQT01000315 SSX02744.1 SSX23116.1

Proteomes

UP000005204 UP000053268 UP000037510 UP000007151 UP000053240 UP000215335 + More
UP000002358

PRIDE

H9JQE8

Pfam

PF00271 Helicase_C + More
PF00270 DEAD

Interpro

IPR014014   RNA_helicase_DEAD_Q_motif        + More
IPR011545   DEAD/DEAH_box_helicase_dom
IPR001650   Helicase_C
IPR014001   Helicase_ATP-bd
IPR000629   RNA-helicase_DEAD-box_CS
IPR027417   P-loop_NTPase

SUPFAM

SSF52540 SSF52540

CDD

cd00079 HELICc

ProteinModelPortal

H9JQE8 A0A2H1WWK0 S4PXT7 A0A194PXG2 A0A0L7L2S9 A0A212FGW3 + More
C9E270 A0A194RHC0 A0A232EJE7 K7J4U6 R4WDI4 U5EZM7 A0A336KCZ1

PDB

4A4D E-value=1.957e-97, Score=911

KEGG

101746121 K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] | (RefSeq) ATP-dependent RNA helicase dbp2

PATHWAY

03040 Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005524 GO:0003676 GO:0004386 GO:0006468 GO:0008242 GO:0016705 GO:0020037 GO:0006811 GO:0016020 GO:0005634 GO:0006260

Length:

823

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01516

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00042

outside

1 - 823

Pi

27.319142

Theta

146.108453

Tajima's D

-2.092154

CLR

4320.663781

CSRT

0.00974951252437378

Interpretation

Possibly Positive selection

Source	Sequence	Identity	Evalue
26822097	QVIMWSATWPK	100.00	4e-07
26280517	CQEIHDWFDSVIK	100.00	4e-07
28467696	CQITGMHGCMFIDK	100.00	4e-07
26822097	EQPNIIEPTGIQAQGWPIAISGR	100.00	1e-06
28467696	TYNNECIIDCATR	100.00	1e-06
26822097	TYNNQNCYGNEQPEFIPR	100.00	1e-05
28556443	GDGPIALILAPTR	100.00	1e-05
26280517	MAMEVINIQQKPAK	100.00	2e-04

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree